Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032904.1

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Reverse (-)

257 .. 3440

Gene Structure 3184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032904.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

gaaatatggattgaaggtaataattgacctgcatgcagcaccaggatctcaaaatggttatgaacacagtgcttcaagagatggatctcaggaatggggccaaaccaatgctaacatacagcagacagttgatgtcatcgagttcttgactgcaaggtatgcaaagagtccaagcctatacgcagttgagctcatcaacgaaccactctccccaggaacttctctgcagaacgtgaccacatactacaaggctggttatgctgcggttcgcaagcactcttccacagcgttcgttgtgttctcaaacagaataggaccaagggaaccgactgagcttttccctgttgccagtggcttggagagagtcgtcattgatgtccattactataacctctttgagagtgcttttgacaacttgactgtccaacagaacatcgatttcatctacactaatcggactagggatttgaacactgttaccacatcaaatggccctctcacttttgttggtgaatgggtagctgaatggaatttgagagatgcaacaaaggaggattaccaaagatttgccaaggctcagttagatgtctgggggcgagcaacatttggatgggcttattggactcttaggaacgtcaataaccattggagtcttgagtggatgataaagaatggttacataaatctgctaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

231

Amino Acids

26.31

Weight (kDa)

5.97

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	53, 92
AcsI	RAATTY	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	14, 76, 470
AjnI	CCWGG	2 cut(s)	41, 212
AluBI	AGCT	3 cut(s)	191, 335, 522
AluI	AGCT	3 cut(s)	191, 335, 522
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	53, 92
AoxI	GGCC	2 cut(s)	98, 491
ApeKI	GCWGC	2 cut(s)	36, 261
ApoI	RAATTY	1 cut(s)	530
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	3 cut(s)	98, 315, 492
AsuHPI	GGTGA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	48, 248
BccI	CCATC	2 cut(s)	75, 604
BciT130I	CCWGG	2 cut(s)	43, 214
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	37, 262
BlsI	GCNGC	2 cut(s)	38, 263
Bme1390I	CCNGG	2 cut(s)	43, 214
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	98, 315, 492
BmiI	GGNNCC	2 cut(s)	99, 325
BmrFI	CCNGG	2 cut(s)	43, 214
BmsI	GCATC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	212, 318, 571
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	43, 214
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	212, 318, 571
BseGI	GGATG	2 cut(s)	615, 667
BseMII	CTCAG	3 cut(s)	102, 322, 591
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	48, 248
BshFI	GGCC	2 cut(s)	100, 493
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	100, 493
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	45, 84
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	100, 493
BspCNI	CTCAG	3 cut(s)	101, 323, 590
BspDI	ATCGAT	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	99, 325
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	53, 92
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	212, 318, 571
BssMI	GATC	2 cut(s)	45, 84
BssT1I	CCWWGG	2 cut(s)	318, 571
Bst2UI	CCWGG	2 cut(s)	43, 214
Bst4CI	ACNGT	4 cut(s)	69, 128, 422, 476
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	34, 273, 598
BstDEI	CTNAG	4 cut(s)	88, 331, 577, 627
BstF5I	GGATG	2 cut(s)	615, 667
BstKTI	GATC	2 cut(s)	48, 87
BstMBI	GATC	2 cut(s)	45, 84
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 258
BstNI	CCWGG	2 cut(s)	43, 214
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	41, 212
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	48, 248
BstX2I	RGATCY	2 cut(s)	45, 84
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	2 cut(s)	45, 84
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	100, 493
BsuTUI	ATCGAT	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	615, 667
BtsIMutI	CAGTG	3 cut(s)	74, 356, 472
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	34, 273, 598
Cfr13I	GGNCC	3 cut(s)	98, 315, 492
ClaI	ATCGAT	1 cut(s)	436
CviAII	CATG	1 cut(s)	33
DdeI	CTNAG	4 cut(s)	88, 331, 577, 627
DpnI	GATC	2 cut(s)	47, 86
DpnII	GATC	2 cut(s)	45, 84
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	318, 571
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	41, 212
EcoT14I	CCWWGG	2 cut(s)	318, 571
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	318, 571
FaeI	CATG	1 cut(s)	36
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	37, 262
FokI	GGATG	2 cut(s)	622, 674
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	37, 262
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	2 cut(s)	37, 262
HaeIII	GGCC	2 cut(s)	100, 493
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	4 cut(s)	167, 364, 623, 650
HphI	GGTGA	1 cut(s)	522
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	4 cut(s)	76, 90, 146, 654
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	4 cut(s)	69, 128, 422, 476
HpyCH4IV	ACGT	2 cut(s)	232, 634
HpyCH4V	TGCA	6 cut(s)	32, 36, 153, 162, 227, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 258
HpyF3I	CTNAG	4 cut(s)	88, 331, 577, 627
HpySE526I	ACGT	2 cut(s)	232, 634
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	45, 84
Lsp1109I	GCAGC	2 cut(s)	48, 248
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	2 cut(s)	232, 634
MaeIII	GTNAC	3 cut(s)	233, 476, 675
MalI	GATC	2 cut(s)	47, 86
MboI	GATC	2 cut(s)	45, 84
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	45, 84
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	22, 530
MlyI	GAGTC	4 cut(s)	176, 373, 617, 659
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	3 cut(s)	402, 505, 545
MseI	TTAA	1 cut(s)	695
MslI	CAYNNNNRTG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	43, 214
MvaI	CCWGG	2 cut(s)	43, 214
MwoI	GCNNNNNNNGC	2 cut(s)	159, 258
NdeII	GATC	2 cut(s)	45, 84
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	99, 325
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	38, 263
PleI	GAGTC	4 cut(s)	175, 372, 617, 658
PpsI	GAGTC	4 cut(s)	175, 372, 617, 658
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	41, 212
PspGI	CCWGG	2 cut(s)	41, 212
PspN4I	GGNNCC	2 cut(s)	99, 325
PspPI	GGNCC	3 cut(s)	98, 315, 492
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	45, 84
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	2 cut(s)	37, 262
Sau3AI	GATC	2 cut(s)	45, 84
Sau96I	GGNCC	3 cut(s)	98, 315, 492
SchI	GAGTC	4 cut(s)	176, 373, 617, 659
ScrFI	CCNGG	2 cut(s)	43, 214
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	19, 31, 159, 193, 235, 337, 394, 524, 637
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	22, 530
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	460
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	41, 212
StyI	CCWWGG	2 cut(s)	318, 571
TaaI	ACNGT	4 cut(s)	69, 128, 422, 476
TaiI	ACGT	2 cut(s)	235, 637
TaqI	TCGA	2 cut(s)	139, 436
TasI	AATT	2 cut(s)	22, 530
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TscAI	CASTG	3 cut(s)	74, 356, 479
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	36, 261
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	76, 431
TspRI	CASTG	3 cut(s)	74, 356, 479
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.