Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Reverse (-)

5063946 .. 5066123

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGATATCACCATGTTCTGGCTTTGCACCTGTTCTTATGTGTTGTTCCTGTTTCTCTAGCACAAGATATCAATTTGCCACTCAAAGCTGTGAATCTTGGGAATTGGCTTCTTATAGAGGGTTGGATGAAACCTTCTCTCTTTGAGGGAATTCCGAACAAAGACCTTTTGGATGCGACACAAGTTCAATTCAAGTCCACAAAGCTGCAGAAGTATCTTGCTGCAGAAAATGGGGGTGGTTCTGGTTCCACTGTTGTCGTGAACCGCGATTCAGCATCTGGTTGGGAAACTTTCAGGTTGTGGAGGATCGATGAATCGTCTTTCAATTTTAGAGTGTTCAACAAGCAGTTTGTGGGATTGTCAAACCAAGACGTTGTCGCAGTTTCAGATTCACCAGGCAATTCAGAAACATTTCGGATTGTAAGGAAAGATGGTGATCCAAATAGAGTTCGCATTCAAGCATCCAACGGTTTATTTCTGCAGGCAACATCCGAGACGCAGTTGACTGCAGATCATGAGGGCTCCGGTTGGGAAGACGATAACCCGTCTGTCTTCATAATGACAATATTAAGTGACAAGACCTTGCGAGGTGAATACCAAATCACAAATGGTTATGGTCCAGACAGAGCTCCTCAAGTTTTGCAGGATCACAGGAACAGTTACATCACCGAAGATGATTTCAGATTCTTGTCTTCAAACGGCTTGGATGCGGTGAGGATCCCGGTTGGATGGTGGATTGCAAAAGATCCATCACCACCTAAGCCTTTTGTTGGTGGCTCCTTGAAAGCCCTTGACAATGCTTTCTCTTGGGCACAAAATTACAGGATGAAGGTGATCATCGATCTACATGCAGTTGAAGGTTCTCAAAACGGCAATGATCACAGTGCAACAAGAGATGGCTATCTTGAATGGGGAAATTCCAAAATACAGGATACTGTGGCAGTTATAGATTTCTTAGCTGCAAGATACTCTAACCATCCAGCTCTTGCTGCAATTGAGTTAATGAATGAGCCTATGGCACCAGGTGTTACTCTAGACAGCCTCAAAAACTATTACAAAGCCGGTTATGATGCAGTAAGGAAGTACACTTCAAGGGCCTATGTCATCTTATCGAACAGGTTAGGACCTGCTGATGCAAAGGAGCTTCTCTCATTTGCCCAAGGCCTCGATCGTGTGGTCGTAGATGTGCATTACTACAGCCTATATTCAGACATGTTCAAAAGCTTCAGCGTGCAACAAAACATCGATTACATCCGCAACCATCGAGCTTCGGATCGATCAATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

430

Amino Acids

47.95

Weight (kDa)

5.83

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1135
AccB1I	GGYRCC	1 cut(s)	1018
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	265, 710, 1255
AclWI	GGATC	7 cut(s)	314, 431, 654, 712, 725, 740, 1281
AcsI	RAATTY	2 cut(s)	150, 916
AcuI	CTGAAG	1 cut(s)	1210
AdeI	CACNNNGTG	1 cut(s)	1025
AfaI	GTAC	1 cut(s)	1085
AfiI	CCNNNNNNNGG	2 cut(s)	19, 770
AflIII	ACRYGT	1 cut(s)	1212
AjnI	CCWGG	2 cut(s)	394, 1021
AluBI	AGCT	8 cut(s)	89, 205, 629, 959, 983, 1144, 1224, 1268
AluI	AGCT	8 cut(s)	89, 205, 629, 959, 983, 1144, 1224, 1268
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	7 cut(s)	314, 431, 654, 712, 725, 740, 1281
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	1095, 1162
ApeKI	GCWGC	4 cut(s)	205, 221, 959, 989
ApoI	RAATTY	2 cut(s)	150, 916
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	617, 1095, 1124
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	7 cut(s)	384, 446, 602, 658, 724, 744, 844
AvaII	GGWCC	2 cut(s)	617, 1124
BaeGI	GKGCMC	1 cut(s)	814
BamHI	GGATCC	1 cut(s)	717
BanI	GGYRCC	1 cut(s)	1018
BanII	GRGCYC	2 cut(s)	524, 631
BbsI	GAAGAC	3 cut(s)	540, 544, 684
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	4 cut(s)	192, 208, 946, 976
BccI	CCATC	6 cut(s)	425, 723, 757, 890, 984, 1269
BceAI	ACGGC	2 cut(s)	715, 886
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	2 cut(s)	396, 1023
BciVI	GTATCC	1 cut(s)	925
BclI	TGATCA	2 cut(s)	834, 877
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	59, 1034
BfmI	CTRYAG	5 cut(s)	206, 222, 479, 507, 1195
BfuAI	ACCTGC	1 cut(s)	1135
BfuI	GTATCC	1 cut(s)	925
BisI	GCNGC	4 cut(s)	206, 222, 960, 990
BlsI	GCNGC	4 cut(s)	207, 223, 961, 991
Bme1390I	CCNGG	3 cut(s)	396, 722, 1023
Bme18I	GGWCC	2 cut(s)	617, 1124
BmgT120I	GGNCC	3 cut(s)	617, 1095, 1124
BmiI	GGNNCC	5 cut(s)	247, 523, 719, 778, 1020
BmrFI	CCNGG	3 cut(s)	396, 722, 1023
BmsI	GCATC	6 cut(s)	163, 284, 470, 697, 1060, 1123
BpiI	GAAGAC	3 cut(s)	540, 544, 684
BplI	GAGNNNNNCTC	2 cut(s)	1133, 1165
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	722
Bsa29I	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BsaBI	GATNNNNATC	2 cut(s)	435, 900
BsaJI	CCNNGG	1 cut(s)	1159
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 770
Bse118I	RCCGGY	1 cut(s)	1061
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	2 cut(s)	435, 900
BseBI	CCWGG	2 cut(s)	396, 1023
BseCI	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BseDI	CCNNGG	1 cut(s)	1159
BseGI	GGATG	9 cut(s)	132, 178, 461, 488, 712, 734, 831, 976, 1251
BseJI	GATNNNNATC	2 cut(s)	435, 900
BseLI	CCNNNNNNNGG	2 cut(s)	19, 770
BseMI	GCAATG	1 cut(s)	880
BseRI	GAGGAG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	4 cut(s)	192, 208, 946, 976
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	1171
BshFI	GGCC	2 cut(s)	1097, 1164
BshNI	GGYRCC	1 cut(s)	1018
BshVI	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BsiEI	CGRYCG	1 cut(s)	1171
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	525, 722, 1062
BslI	CCNNNNNNNGG	2 cut(s)	19, 770
BsmAI	GTCTC	1 cut(s)	488
BsmBI	CGTCTC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	1097, 1164
Bsp1286I	GDGCHC	3 cut(s)	524, 631, 814
BspACI	CCGC	3 cut(s)	265, 710, 1255
BspANI	GGCC	2 cut(s)	1097, 1164
BspDI	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	247, 523, 719, 778, 1020
BspMAI	CTGCAG	4 cut(s)	210, 226, 483, 511
BspMI	ACCTGC	1 cut(s)	1135
BspPI	GGATC	7 cut(s)	314, 431, 654, 712, 725, 740, 1281
BspT107I	GGYRCC	1 cut(s)	1018
BsrDI	GCAATG	1 cut(s)	880
BsrFI	RCCGGY	1 cut(s)	1061
BssAI	RCCGGY	1 cut(s)	1061
BssECI	CCNNGG	1 cut(s)	1159
BssT1I	CCWWGG	1 cut(s)	1159
Bst2UI	CCWGG	2 cut(s)	396, 1023
Bst4CI	ACNGT	6 cut(s)	253, 470, 659, 884, 937, 1287
BstC8I	GCNNGC	2 cut(s)	483, 1232
BstDEI	CTNAG	2 cut(s)	759, 955
BstF5I	GGATG	9 cut(s)	132, 178, 461, 488, 712, 734, 831, 976, 1251
BstFNI	CGCG	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	488
BstMCI	CGRYCG	1 cut(s)	1171
BstMWI	GCNNNNNNNGC	1 cut(s)	989
BstNI	CCWGG	2 cut(s)	396, 1023
BstNSI	RCATGY	2 cut(s)	851, 1216
BstSCI	CCNGG	3 cut(s)	394, 720, 1021
BstSFI	CTRYAG	5 cut(s)	206, 222, 479, 507, 1195
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	192, 208, 946, 976
BstV2I	GAAGAC	3 cut(s)	540, 544, 684
BstX2I	RGATCY	2 cut(s)	717, 745
BstYI	RGATCY	2 cut(s)	717, 745
Bsu15I	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BsuI	GTATCC	1 cut(s)	925
BsuRI	GGCC	2 cut(s)	1097, 1164
BsuTUI	ATCGAT	4 cut(s)	309, 840, 1245, 1276
BtsCI	GGATG	9 cut(s)	132, 178, 461, 488, 712, 734, 831, 976, 1251
BtsIMutI	CAGTG	2 cut(s)	249, 889
BveI	ACCTGC	1 cut(s)	1135
Cac8I	GCNNGC	2 cut(s)	483, 1232
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	1061
Cfr13I	GGNCC	3 cut(s)	617, 1095, 1124
ClaI	ATCGAT	4 cut(s)	309, 840, 1245, 1276
CseI	GACGC	1 cut(s)	505
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	1 cut(s)	1084
CviAII	CATG	4 cut(s)	14, 515, 848, 1213
CviQI	GTAC	1 cut(s)	1084
DdeI	CTNAG	2 cut(s)	759, 955
DraIII	CACNNNGTG	1 cut(s)	1025
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	1159
Eco147I	AGGCCT	1 cut(s)	1164
Eco24I	GRGCYC	2 cut(s)	524, 631
Eco32I	GATATC	2 cut(s)	8, 70
Eco47I	GGWCC	2 cut(s)	617, 1124
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	1210
EcoICRI	GAGCTC	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	1095, 1124
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	394, 1021
EcoRV	GATATC	2 cut(s)	8, 70
EcoT14I	CCWWGG	1 cut(s)	1159
EcoT38I	GRGCYC	2 cut(s)	524, 631
ErhI	CCWWGG	1 cut(s)	1159
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	4 cut(s)	17, 518, 851, 1216
FatI	CATG	4 cut(s)	13, 514, 847, 1212
FbaI	TGATCA	2 cut(s)	834, 877
Fnu4HI	GCNGC	4 cut(s)	206, 222, 960, 990
FokI	GGATG	9 cut(s)	139, 185, 448, 475, 719, 741, 838, 963, 1238
FriOI	GRGCYC	2 cut(s)	524, 631
Fsp4HI	GCNGC	4 cut(s)	206, 222, 960, 990
FspBI	CTAG	2 cut(s)	59, 1034
GluI	GCNGC	4 cut(s)	206, 222, 960, 990
HaeIII	GGCC	2 cut(s)	1097, 1164
HapII	CCGG	3 cut(s)	525, 722, 1062
HgaI	GACGC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	17, 518, 851, 1216
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	1222
HinfI	GANTC	5 cut(s)	94, 269, 314, 389, 684
HpaII	CCGG	3 cut(s)	525, 722, 1062
HphI	GGTGA	7 cut(s)	384, 446, 602, 658, 724, 744, 844
Hpy166II	GTNNAC	4 cut(s)	198, 262, 504, 1086
Hpy188I	TCNGA	8 cut(s)	156, 388, 406, 417, 493, 683, 1210, 1273
Hpy188III	TCNNGA	5 cut(s)	259, 515, 620, 905, 1034
Hpy8I	GTNNAC	4 cut(s)	198, 262, 504, 1086
HpyAV	CCTTC	3 cut(s)	144, 823, 851
HpyCH4III	ACNGT	6 cut(s)	253, 470, 659, 884, 937, 1287
HpyCH4IV	ACGT	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	989
HpyF3I	CTNAG	2 cut(s)	759, 955
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	17, 518, 851, 1216
Ksp22I	TGATCA	2 cut(s)	834, 877
LmnI	GCTCC	4 cut(s)	527, 634, 782, 1141
Lsp1109I	GCAGC	4 cut(s)	192, 208, 946, 976
LweI	GCATC	6 cut(s)	163, 284, 470, 697, 1060, 1123
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	2 cut(s)	59, 1034
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	572, 659, 1027
MboII	GAAGA	4 cut(s)	544, 545, 683, 684
MfeI	CAATTG	1 cut(s)	993
MflI	RGATCY	2 cut(s)	717, 745
MhlI	GDGCHC	3 cut(s)	524, 631, 814
MluCI	AATT	9 cut(s)	73, 103, 150, 188, 325, 400, 817, 916, 993
MmeI	TCCRAC	3 cut(s)	104, 489, 706
MnlI	CCTC	9 cut(s)	112, 139, 297, 511, 581, 642, 708, 1052, 1175
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	569, 1001
MspI	CCGG	3 cut(s)	525, 722, 1062
MspR9I	CCNGG	3 cut(s)	396, 722, 1023
MunI	CAATTG	1 cut(s)	993
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	396, 1023
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	989
NciI	CCSGG	1 cut(s)	722
NlaIII	CATG	4 cut(s)	17, 518, 851, 1216
NlaIV	GGNNCC	5 cut(s)	247, 523, 719, 778, 1020
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	2 cut(s)	851, 1216
PagI	TCATGA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	1164
PciI	ACATGT	1 cut(s)	1212
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	94, 269, 314, 389, 684
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	207, 223, 961, 991
Ple19I	CGATCG	1 cut(s)	1171
PpuMI	RGGWCCY	1 cut(s)	1124
PscI	ACATGT	1 cut(s)	1212
Psp124BI	GAGCTC	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	1124
Psp6I	CCWGG	2 cut(s)	394, 1021
PspGI	CCWGG	2 cut(s)	394, 1021
PspN4I	GGNNCC	5 cut(s)	247, 523, 719, 778, 1020
PspPI	GGNCC	3 cut(s)	617, 1095, 1124
PspPPI	RGGWCCY	1 cut(s)	1124
PstI	CTGCAG	4 cut(s)	210, 226, 483, 511
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	717, 745
PsyI	GACNNNGTC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	1171
RsaI	GTAC	1 cut(s)	1085
RsaNI	GTAC	1 cut(s)	1084
SacI	GAGCTC	1 cut(s)	631
SaqAI	TTAA	2 cut(s)	569, 1001
SatI	GCNGC	4 cut(s)	206, 222, 960, 990
Sau96I	GGNCC	3 cut(s)	617, 1095, 1124
ScrFI	CCNGG	3 cut(s)	396, 722, 1023
SduI	GDGCHC	3 cut(s)	524, 631, 814
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	6 cut(s)	163, 284, 470, 697, 1060, 1123
SfcI	CTRYAG	5 cut(s)	206, 222, 479, 507, 1195
SinI	GGWCC	2 cut(s)	617, 1124
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	9 cut(s)	73, 103, 150, 188, 325, 400, 817, 916, 993
SseBI	AGGCCT	1 cut(s)	1164
SsiI	CCGC	3 cut(s)	265, 710, 1255
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	59, 1034
SstI	GAGCTC	1 cut(s)	631
StuI	AGGCCT	1 cut(s)	1164
StyD4I	CCNGG	3 cut(s)	394, 720, 1021
StyI	CCWWGG	1 cut(s)	1159
TaaI	ACNGT	6 cut(s)	253, 470, 659, 884, 937, 1287
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	7 cut(s)	309, 840, 1112, 1167, 1245, 1264, 1276
TasI	AATT	9 cut(s)	73, 103, 150, 188, 325, 400, 817, 916, 993
TatI	WGTACW	1 cut(s)	1083
TfiI	GAWTC	5 cut(s)	94, 269, 314, 389, 684
Tru1I	TTAA	2 cut(s)	569, 1001
Tru9I	TTAA	2 cut(s)	569, 1001
TscAI	CASTG	2 cut(s)	256, 889
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	4 cut(s)	205, 221, 959, 989
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	5 cut(s)	143, 327, 544, 842, 1019
TspRI	CASTG	2 cut(s)	256, 889
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	617, 1124
XapI	RAATTY	2 cut(s)	150, 916
XbaI	TCTAGA	1 cut(s)	1033
XceI	RCATGY	2 cut(s)	851, 1216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	59, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.