MD01G1025400.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
9697060 .. 9699782
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1025400.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGGATATCACCATGTCCTGGCTTTGTACCTATTGTTATGTGTTGTTCCTGTTTCCCTAGCACAAGATATCAATTTGCCACTCAAAGCTGTGAATCTTGGGAATTGGCTTCTTATAGAGGGTTGGATGAAACCTCCTCTCTTTGATGGAATTCCGAACAATGACCTTTTGGATGGGACACAAGTTCAATTCAAGTCCACAAAGCTGCAGAAGTATCTTGCTGCAGAAAATGGGGGTGGTTCTGGTTCCACTGTTGTTGTGAACCGCGATTCAGCGTCTGGTTGGGAAACTTTTAGGTTGTGGAGGATCGATGAATCGTCTTTCAATTTTAGAGTGTTCAACAAGCAGTTTGTGGGATTGTCAAACCGGGACGTTGTCGCAGTTTCAGATTCACCAGGCAATTCAGAAACATTTCGGATTGTAAGGAAAGATGGTGATCCAAATAGAGTTTGTATTCAAGCATCCAATGGTTTATTTCTGCAGGCAACATCCGAGACGCAGTTGACTGCAGATTATGGGGGCTCCGGTTGGGAAGACGATAACCCATCTGTCTTCATAATGACAATATTAAGTGACAAGACCTTGCGAGGTGAATACCAAATCACAAATGGTTATGGTCCAGACAGAGCTCCTCAAGTTTTGCAGGATCACTGGAACAGTTACATCACCGAAGATGATTTCAGATTCTTGTCTTCAAACGGCTTGGATGCGGTGAGGATCCCGGTTGGATGGTGGATTGCAAAAGATCCATCACCACCTAAGCCTTTTGTTGGTGGCTCCTTGAAAGCCCTTGACAATGCTTTCTCTTGGGCACAAAATTACGGGATGAAGGTGATCGTCGATCTACATGCAGTTGAAGGTTCTCAAAACGGCAATGATCACAGTGCAACAAGAGATGGCTATCTTGAATGGGGAAATTCCAAAATACAGGATACTGTGGCAGTTATAGATTTCTTAGCTGCAAGATACGCTAACCATCCAGCTCTTGCTGCAATTGAGTTAATGAATGAGCCTATGGCACCAGGTGTTACTCTAGACAGCCTCAAAAACTATTACAAAGCCGGTTATGATGCAGTAAGGAAGTACACTTCAAGGGCCTATGTCGTCTTATCGAACCGGTTAGGACCAGCTGATGCAAAGGAGCTTCTCTCATTTGCCCAAGGCCTCGATCGTGTGGTCGTAGATGTGCATTACTACAGCCTCTATTCAGACATGTTCAACAGCTTCAGCGTGCAACAAAACATCGATTTCATCCACAACCAACGAGCTTCGGATCTCGATACTGTGACCACTTCCAGTGGTGTACCCCTCACATTTGTTGGGGAATGGGTTGCCGAATGGGCGATAAATGGAGCATCAAAGGAAGAATACCAGAGATTTGCAAGTGCCCAAGTAGATGTGTATGGGCGTGCCACTTTTGGATGGGCATATTGGGCTTATAAGTGTCAATACAACCATTGGAGCCTCAAGTGGATGATTGAAAACAACTACATTAACCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

56.03

Weight (kDa)

5.13

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 53 - 189 3.4e-63 Domain of unknown function (DUF7910)
Cellulase PF00150 217 - 480 3.3e-23 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1440
AccB1I GGYRCC 1 cut(s) 1018
AccB7I CCANNNNNTGG 1 cut(s) 19
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 265, 710
AclWI GGATC 7 cut(s) 314, 431, 654, 712, 725, 740, 1281
AcsI RAATTY 2 cut(s) 150, 916
AcuI CTGAAG 1 cut(s) 1210
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 3 cut(s) 29, 1085, 1305
AfiI CCNNNNNNNGG 2 cut(s) 19, 770
AflIII ACRYGT 1 cut(s) 1212
AgeI ACCGGT 1 cut(s) 1116
AjnI CCWGG 3 cut(s) 18, 394, 1021
AluBI AGCT 9 cut(s) 89, 205, 629, 959, 983, 1130, 1144, 1224, 1268
AluI AGCT 9 cut(s) 89, 205, 629, 959, 983, 1130, 1144, 1224, 1268
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 7 cut(s) 314, 431, 654, 712, 725, 740, 1281
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 2 cut(s) 1095, 1162
ApeKI GCWGC 4 cut(s) 205, 221, 959, 989
ApoI RAATTY 2 cut(s) 150, 916
AsiGI ACCGGT 1 cut(s) 1116
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 617, 1095, 1124
AsuC2I CCSGG 2 cut(s) 368, 722
AsuHPI GGTGA 7 cut(s) 384, 446, 602, 658, 724, 744, 844
AvaII GGWCC 2 cut(s) 617, 1124
BaeGI GKGCMC 2 cut(s) 814, 1390
BamHI GGATCC 1 cut(s) 717
BanI GGYRCC 1 cut(s) 1018
BanII GRGCYC 2 cut(s) 524, 631
BbsI GAAGAC 3 cut(s) 540, 544, 684
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 4 cut(s) 192, 208, 946, 976
BccI CCATC 9 cut(s) 140, 167, 425, 553, 723, 757, 890, 984, 1416
BceAI ACGGC 2 cut(s) 715, 886
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 3 cut(s) 20, 396, 1023
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 2 cut(s) 368, 722
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 59, 1034
BfmI CTRYAG 5 cut(s) 206, 222, 479, 507, 1195
BfuI GTATCC 1 cut(s) 925
BglI GCCNNNNNGGC 1 cut(s) 1340
BisI GCNGC 4 cut(s) 206, 222, 960, 990
BlsI GCNGC 4 cut(s) 207, 223, 961, 991
Bme1390I CCNGG 5 cut(s) 20, 368, 396, 722, 1023
Bme18I GGWCC 2 cut(s) 617, 1124
BmgT120I GGNCC 3 cut(s) 617, 1095, 1124
BmiI GGNNCC 6 cut(s) 247, 523, 719, 778, 1020, 1463
BmrFI CCNGG 5 cut(s) 20, 368, 396, 722, 1023
BmsI GCATC 5 cut(s) 470, 697, 1060, 1123, 1364
BpiI GAAGAC 3 cut(s) 540, 544, 684
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 2 cut(s) 618, 1451
BpuMI CCSGG 2 cut(s) 368, 722
Bsa29I ATCGAT 2 cut(s) 309, 1245
BsaBI GATNNNNATC 2 cut(s) 435, 900
BsaJI CCNNGG 1 cut(s) 1159
BsaWI WCCGGW 2 cut(s) 524, 1116
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 770
Bse118I RCCGGY 2 cut(s) 1061, 1116
Bse1I ACTGG 2 cut(s) 656, 1296
Bse3DI GCAATG 1 cut(s) 880
Bse8I GATNNNNATC 2 cut(s) 435, 900
BseBI CCWGG 3 cut(s) 20, 396, 1023
BseCI ATCGAT 2 cut(s) 309, 1245
BseDI CCNNGG 1 cut(s) 1159
BseJI GATNNNNATC 2 cut(s) 435, 900
BseLI CCNNNNNNNGG 2 cut(s) 19, 770
BseMI GCAATG 1 cut(s) 880
BseNI ACTGG 2 cut(s) 656, 1296
BseRI GAGGAG 2 cut(s) 126, 621
BseSI GKGCMC 2 cut(s) 814, 1390
BseXI GCAGC 4 cut(s) 192, 208, 946, 976
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 1171
BshFI GGCC 2 cut(s) 1097, 1164
BshNI GGYRCC 1 cut(s) 1018
BshTI ACCGGT 1 cut(s) 1116
BshVI ATCGAT 2 cut(s) 309, 1245
BsiEI CGRYCG 1 cut(s) 1171
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 5 cut(s) 367, 525, 722, 1062, 1117
BslFI GGGAC 2 cut(s) 190, 383
BslI CCNNNNNNNGG 2 cut(s) 19, 770
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 190, 383
BsnI GGCC 2 cut(s) 1097, 1164
Bsp1286I GDGCHC 4 cut(s) 524, 631, 814, 1390
BspACI CCGC 2 cut(s) 265, 710
BspANI GGCC 2 cut(s) 1097, 1164
BspDI ATCGAT 2 cut(s) 309, 1245
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 6 cut(s) 247, 523, 719, 778, 1020, 1463
BspMAI CTGCAG 4 cut(s) 210, 226, 483, 511
BspPI GGATC 7 cut(s) 314, 431, 654, 712, 725, 740, 1281
BspT107I GGYRCC 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 880
BsrFI RCCGGY 2 cut(s) 1061, 1116
BsrI ACTGG 2 cut(s) 656, 1296
BssAI RCCGGY 2 cut(s) 1061, 1116
BssECI CCNNGG 1 cut(s) 1159
BssT1I CCWWGG 1 cut(s) 1159
Bst2UI CCWGG 3 cut(s) 20, 396, 1023
Bst4CI ACNGT 5 cut(s) 253, 659, 884, 937, 1285
BstC8I GCNNGC 3 cut(s) 483, 1232, 1410
BstDEI CTNAG 2 cut(s) 759, 955
BstFNI CGCG 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 488
BstMCI CGRYCG 1 cut(s) 1171
BstMWI GCNNNNNNNGC 4 cut(s) 968, 989, 1340, 1433
BstNI CCWGG 3 cut(s) 20, 396, 1023
BstNSI RCATGY 2 cut(s) 851, 1216
BstSCI CCNGG 5 cut(s) 18, 366, 394, 720, 1021
BstSFI CTRYAG 5 cut(s) 206, 222, 479, 507, 1195
BstSLI GKGCMC 2 cut(s) 814, 1390
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 4 cut(s) 192, 208, 946, 976
BstV2I GAAGAC 3 cut(s) 540, 544, 684
BstX2I RGATCY 3 cut(s) 717, 745, 1273
BstYI RGATCY 3 cut(s) 717, 745, 1273
Bsu15I ATCGAT 2 cut(s) 309, 1245
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 2 cut(s) 1097, 1164
BsuTUI ATCGAT 2 cut(s) 309, 1245
BtsIMutI CAGTG 4 cut(s) 249, 649, 889, 1303
Cac8I GCNNGC 3 cut(s) 483, 1232, 1410
CaiI CAGNNNCTG 1 cut(s) 278
Cfr10I RCCGGY 2 cut(s) 1061, 1116
Cfr13I GGNCC 3 cut(s) 617, 1095, 1124
ClaI ATCGAT 2 cut(s) 309, 1245
CseI GACGC 2 cut(s) 264, 505
CsiI ACCWGGT 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 28, 1084, 1304
CspAI ACCGGT 1 cut(s) 1116
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 3 cut(s) 14, 848, 1213
CviQI GTAC 3 cut(s) 28, 1084, 1304
DdeI CTNAG 2 cut(s) 759, 955
DraIII CACNNNGTG 1 cut(s) 1025
Ecl136II GAGCTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 1159
Eco147I AGGCCT 1 cut(s) 1164
Eco24I GRGCYC 2 cut(s) 524, 631
Eco32I GATATC 2 cut(s) 8, 70
Eco47I GGWCC 2 cut(s) 617, 1124
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 1210
EcoICRI GAGCTC 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 1095
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 3 cut(s) 18, 394, 1021
EcoRV GATATC 2 cut(s) 8, 70
EcoT14I CCWWGG 1 cut(s) 1159
EcoT38I GRGCYC 2 cut(s) 524, 631
ErhI CCWWGG 1 cut(s) 1159
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 3 cut(s) 17, 851, 1216
FaqI GGGAC 2 cut(s) 190, 383
FatI CATG 3 cut(s) 13, 847, 1212
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 4 cut(s) 206, 222, 960, 990
FriOI GRGCYC 2 cut(s) 524, 631
Fsp4HI GCNGC 4 cut(s) 206, 222, 960, 990
FspBI CTAG 2 cut(s) 59, 1034
GluI GCNGC 4 cut(s) 206, 222, 960, 990
HaeIII GGCC 2 cut(s) 1097, 1164
HapII CCGG 5 cut(s) 367, 525, 722, 1062, 1117
HgaI GACGC 2 cut(s) 264, 505
Hin1II CATG 3 cut(s) 17, 851, 1216
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 5 cut(s) 94, 269, 314, 389, 684
HpaII CCGG 5 cut(s) 367, 525, 722, 1062, 1117
HphI GGTGA 7 cut(s) 384, 446, 602, 658, 724, 744, 844
Hpy166II GTNNAC 5 cut(s) 198, 262, 504, 1086, 1304
Hpy188I TCNGA 8 cut(s) 156, 388, 406, 417, 493, 683, 1210, 1273
Hpy188III TCNNGA 4 cut(s) 620, 905, 1034, 1277
Hpy8I GTNNAC 5 cut(s) 198, 262, 504, 1086, 1304
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 2 cut(s) 823, 851
HpyCH4III ACNGT 5 cut(s) 253, 659, 884, 937, 1285
HpyCH4IV ACGT 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 968, 989, 1340, 1433
HpyF3I CTNAG 2 cut(s) 759, 955
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 17, 851, 1216
Ksp22I TGATCA 1 cut(s) 877
LmnI GCTCC 6 cut(s) 527, 634, 782, 1141, 1352, 1461
Lsp1109I GCAGC 4 cut(s) 192, 208, 946, 976
LweI GCATC 5 cut(s) 470, 697, 1060, 1123, 1364
MabI ACCWGGT 1 cut(s) 1021
MaeI CTAG 2 cut(s) 59, 1034
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 4 cut(s) 572, 659, 1027, 1285
MboII GAAGA 5 cut(s) 544, 545, 683, 684, 1376
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 3 cut(s) 717, 745, 1273
MhlI GDGCHC 4 cut(s) 524, 631, 814, 1390
MmeI TCCRAC 2 cut(s) 104, 706
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 4 cut(s) 569, 1001, 1494, 1500
MspA1I CMGCKG 1 cut(s) 1130
MspI CCGG 5 cut(s) 367, 525, 722, 1062, 1117
MspR9I CCNGG 5 cut(s) 20, 368, 396, 722, 1023
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 3 cut(s) 20, 396, 1023
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 968, 989, 1340, 1433
NciI CCSGG 2 cut(s) 368, 722
NlaIII CATG 3 cut(s) 17, 851, 1216
NlaIV GGNNCC 6 cut(s) 247, 523, 719, 778, 1020, 1463
NmuCI GTSAC 2 cut(s) 572, 1285
NspI RCATGY 2 cut(s) 851, 1216
PceI AGGCCT 1 cut(s) 1164
PciI ACATGT 1 cut(s) 1212
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 94, 269, 314, 389, 684
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 1116
PkrI GCNGC 4 cut(s) 207, 223, 961, 991
Ple19I CGATCG 1 cut(s) 1171
PscI ACATGT 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 1440
Psp124BI GAGCTC 1 cut(s) 631
Psp6I CCWGG 3 cut(s) 18, 394, 1021
PspGI CCWGG 3 cut(s) 18, 394, 1021
PspN4I GGNNCC 6 cut(s) 247, 523, 719, 778, 1020, 1463
PspPI GGNCC 3 cut(s) 617, 1095, 1124
PstI CTGCAG 4 cut(s) 210, 226, 483, 511
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 3 cut(s) 717, 745, 1273
PsyI GACNNNGTC 1 cut(s) 374
PvuI CGATCG 1 cut(s) 1171
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 3 cut(s) 29, 1085, 1305
RsaNI GTAC 3 cut(s) 28, 1084, 1304
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 4 cut(s) 569, 1001, 1494, 1500
SatI GCNGC 4 cut(s) 206, 222, 960, 990
Sau96I GGNCC 3 cut(s) 617, 1095, 1124
ScrFI CCNGG 5 cut(s) 20, 368, 396, 722, 1023
SduI GDGCHC 4 cut(s) 524, 631, 814, 1390
SexAI ACCWGGT 1 cut(s) 1021
SfaNI GCATC 5 cut(s) 470, 697, 1060, 1123, 1364
SfcI CTRYAG 5 cut(s) 206, 222, 479, 507, 1195
SinI GGWCC 2 cut(s) 617, 1124
SmlI CTYRAG 2 cut(s) 633, 1466
SmoI CTYRAG 2 cut(s) 633, 1466
SseBI AGGCCT 1 cut(s) 1164
SsiI CCGC 2 cut(s) 265, 710
SspI AATATT 1 cut(s) 567
SspMI CTAG 2 cut(s) 59, 1034
SstI GAGCTC 1 cut(s) 631
StuI AGGCCT 1 cut(s) 1164
StyD4I CCNGG 5 cut(s) 18, 366, 394, 720, 1021
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 5 cut(s) 253, 659, 884, 937, 1285
TaiI ACGT 1 cut(s) 375
TaqI TCGA 6 cut(s) 309, 840, 1112, 1167, 1245, 1278
TatI WGTACW 1 cut(s) 1083
TfiI GAWTC 5 cut(s) 94, 269, 314, 389, 684
Tru1I TTAA 4 cut(s) 569, 1001, 1494, 1500
Tru9I TTAA 4 cut(s) 569, 1001, 1494, 1500
TscAI CASTG 4 cut(s) 256, 656, 889, 1303
TseFI GTSAC 2 cut(s) 572, 1285
TseI GCWGC 4 cut(s) 205, 221, 959, 989
Tsp45I GTSAC 2 cut(s) 572, 1285
TspDTI ATGAA 6 cut(s) 143, 327, 544, 842, 1019, 1240
TspRI CASTG 4 cut(s) 256, 656, 889, 1303
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 617, 1124
XapI RAATTY 2 cut(s) 150, 916
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 2 cut(s) 851, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 59, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.