Rh2AG253000

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
28746927 .. 28750679
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG253000.1

Sequence Viewer

Length: 1374 bp
ATGAAACCTTCTCTCTTTGATGAAATACCTAACAAAGATCTTTTGGATGGGACAAAGGTGCAATTGAAGTCCACAAAGCTTCAGAACTATTTGGCAGCAGAAAATGGGGGTGATTCCATTGTTGTTATTAATCGCACTGCAGCCTCTGATTGGGAAACTTTCCGGTTGTGGAGGATTGATGAAAATTCTTTCAACTTTCGAGTATCAAACAAGCAGTTTGTGGGATTGTCAAGTGAGGGAACCAACAGGATAGTAGCAATGAGAGATGCACCTGGTGACACCGAAACATTTCGGATTGTAAGGAAAGATGGCGAGCCAAATAGGATTCGCATTCAAGCATCCAATGGCTTATTTCTCCAGGCAATATCAGATACGGTACTGACAGCAGATTATGGAGGCTTGGGTTGGGATGACAGTGATCCATCCGTGTTTATTATGACAATAGTAGGCTCATTACAAGGTGAATACCAAATAGCAAATGGTTATGGTCCGGATAAAGCCCCTCAAGTCCTGCAGGACCACCGGAACTCTTACATCACTGAAGAGGATTTCAGATTCATGTCATCCAACGGCTTGAATGCTGTGAGGATACCAGTTGGATGGTGGATTGCATGTGATCCAACACCTCCAAAGCCTTTTGTTGGGGGATCATTGCAAGCCTTGGACAATGCTTTCACTTGGGCACAAAAATATGGGTTGAAGGTGATTATAGATCTACATGCAGTTCAAGCTTCCCAAAACGGCATGGAACACAGTGCAACAAGAGATGGGTATCTGGAATTTGGAGATTCCAGCATACAGGACACCGTGGAAGTTATAGATTTCCTAGCAGAAAGATATGCTAAAAATCCAGCTCTCGGAGCAATCGAGTTAATAAATGAGCCTTGGGCACCACTTGTGACTCTAGACACCCTCAAAAATTATTACAAAGCTGGTTATGATGCAATAAGGAAGTACACCTCAAGTGCTTATGTGATCCTATCAAACCGCTTGGGACCTGCTGATCGAAAGGAGCTCCTCTCATTTGCCCAAGGCCTCAGTAAGGCAGTCATAGACGTGCATTACTACAGCTTGTATTCAGACATGTTCAACGGTTTTAGTGTGCAACAAAACGTCGATTTCATCTACAACCAGCGAGGTTCTGATCTCGCTGCTGTGACCACTTCTGATGGACCCCTCACTTTTGTTGGGGAATGGGTTGCAGAATGGGCAATAAATGGAGCATCTATGGAAGACTACCACAGATTTGCCAAAGCACAACTAGATGTTTACGGCCGTGCTACTTTTGGATGGGCATACTGGTCTTACAAGTGTCAGTACAATCACTGGAGCCTCAAATGGATGATCGAGAATAACTATATAAAACTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

51.39

Weight (kDa)

5.03

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 11 - 149 6e-63 Domain of unknown function (DUF7910)
Cellulase PF00150 176 - 436 3.4e-22 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 889
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 1 cut(s) 988
AclWI GGATC 4 cut(s) 413, 611, 655, 970
AcoI YGGCCR 1 cut(s) 1273
AcsI RAATTY 2 cut(s) 184, 779
AcuI CTGAAG 2 cut(s) 65, 561
AdeI CACNNNGTG 1 cut(s) 275
AfaI GTAC 3 cut(s) 378, 956, 1319
AfiI CCNNNNNNNGG 4 cut(s) 150, 641, 857, 1042
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 7 cut(s) 67, 193, 335, 577, 700, 728, 1090
AjiI CACGTC 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 271, 357
AluBI AGCT 6 cut(s) 79, 731, 854, 932, 1015, 1071
AluI AGCT 6 cut(s) 79, 731, 854, 932, 1015, 1071
Alw21I GWGCWC 1 cut(s) 1017
AlwI GGATC 4 cut(s) 413, 611, 655, 970
AlwNI CAGNNNCTG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 2 cut(s) 1033, 1273
ApeKI GCWGC 3 cut(s) 95, 140, 1151
ApoI RAATTY 2 cut(s) 184, 779
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 4 cut(s) 488, 517, 995, 1172
AsuHPI GGTGA 4 cut(s) 122, 287, 473, 715
AvaII GGWCC 4 cut(s) 488, 517, 995, 1172
BaeGI GKGCMC 2 cut(s) 685, 892
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 1017
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1017
BbvI GCAGC 3 cut(s) 107, 152, 1138
BccI CCATC 7 cut(s) 41, 302, 430, 594, 761, 1163, 1284
BceAI ACGGC 4 cut(s) 586, 757, 1260, 1288
BciT130I CCWGG 2 cut(s) 273, 359
BciVI GTATCC 1 cut(s) 582
BfaI CTAG 3 cut(s) 827, 905, 1262
BfmI CTRYAG 3 cut(s) 138, 512, 1066
BfuAI ACCTGC 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 582
BglII AGATCT 2 cut(s) 37, 712
BisI GCNGC 3 cut(s) 96, 141, 1152
BlsI GCNGC 3 cut(s) 97, 142, 1153
Bme1390I CCNGG 2 cut(s) 273, 359
Bme18I GGWCC 4 cut(s) 488, 517, 995, 1172
BmgBI CACGTC 1 cut(s) 1057
BmgT120I GGNCC 4 cut(s) 488, 517, 995, 1172
BmiI GGNNCC 5 cut(s) 241, 891, 996, 1174, 1331
BmrFI CCNGG 2 cut(s) 273, 359
BmsI GCATC 4 cut(s) 256, 347, 931, 1232
BpiI GAAGAC 1 cut(s) 1239
BplI GAGNNNNNCTC 2 cut(s) 1004, 1036
BpmI CTGGAG 2 cut(s) 341, 1348
BpuEI CTTGAG 2 cut(s) 489, 946
BsaBI GATNNNNATC 1 cut(s) 771
BsaJI CCNNGG 4 cut(s) 660, 807, 884, 1030
BsaWI WCCGGW 3 cut(s) 162, 490, 522
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 641, 857, 1042
Bse1I ACTGG 3 cut(s) 593, 1304, 1331
Bse3DI GCAATG 2 cut(s) 264, 650
Bse8I GATNNNNATC 1 cut(s) 771
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 273, 359
BseDI CCNNGG 4 cut(s) 660, 807, 884, 1030
BseGI GGATG 8 cut(s) 52, 338, 415, 422, 563, 605, 1295, 1347
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 4 cut(s) 150, 641, 857, 1042
BseMI GCAATG 2 cut(s) 264, 650
BseMII CTCAG 1 cut(s) 1051
BseNI ACTGG 3 cut(s) 593, 1304, 1331
BseRI GAGGAG 1 cut(s) 1007
BseSI GKGCMC 2 cut(s) 685, 892
BseX3I CGGCCG 1 cut(s) 1273
BseXI GCAGC 3 cut(s) 107, 152, 1138
Bsh1285I CGRYCG 1 cut(s) 1276
BshFI GGCC 2 cut(s) 1035, 1275
BshNI GGYRCC 1 cut(s) 889
BsiEI CGRYCG 1 cut(s) 1276
BsiHKAI GWGCWC 1 cut(s) 1017
BsiSI CCGG 3 cut(s) 163, 491, 523
BslFI GGGAC 2 cut(s) 64, 1008
BslI CCNNNNNNNGG 4 cut(s) 150, 641, 857, 1042
BsmFI GGGAC 2 cut(s) 64, 1008
BsmI GAATGC 2 cut(s) 330, 583
BsnI GGCC 2 cut(s) 1035, 1275
Bsp1286I GDGCHC 3 cut(s) 685, 892, 1017
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
BspACI CCGC 1 cut(s) 988
BspANI GGCC 2 cut(s) 1035, 1275
BspCNI CTCAG 1 cut(s) 1050
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 5 cut(s) 241, 891, 996, 1174, 1331
BspMAI CTGCAG 2 cut(s) 142, 516
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 4 cut(s) 413, 611, 655, 970
BspT107I GGYRCC 1 cut(s) 889
BsrDI GCAATG 2 cut(s) 264, 650
BsrI ACTGG 3 cut(s) 593, 1304, 1331
BssECI CCNNGG 4 cut(s) 660, 807, 884, 1030
BssMI GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
BssT1I CCWWGG 3 cut(s) 660, 884, 1030
Bst2UI CCWGG 2 cut(s) 273, 359
Bst4CI ACNGT 5 cut(s) 376, 416, 755, 808, 1094
Bst6I CTCTTC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 314, 657
BstDEI CTNAG 1 cut(s) 1037
BstDSI CCRYGG 1 cut(s) 807
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 8 cut(s) 52, 338, 415, 422, 563, 605, 1295, 1347
BstKTI GATC 9 cut(s) 40, 421, 619, 650, 715, 978, 1006, 1147, 1347
BstMBI GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
BstMCI CGRYCG 1 cut(s) 1276
BstMWI GCNNNNNNNGC 3 cut(s) 728, 860, 1208
BstNI CCWGG 2 cut(s) 273, 359
BstNSI RCATGY 3 cut(s) 615, 722, 1087
BstSCI CCNGG 2 cut(s) 271, 357
BstSFI CTRYAG 3 cut(s) 138, 512, 1066
BstSLI GKGCMC 2 cut(s) 685, 892
BstV1I GCAGC 3 cut(s) 107, 152, 1138
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 2 cut(s) 37, 712
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 2 cut(s) 37, 712
BstZI CGGCCG 1 cut(s) 1273
BsuI GTATCC 1 cut(s) 582
BsuRI GGCC 2 cut(s) 1035, 1275
BtgI CCRYGG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 1057
BtsCI GGATG 8 cut(s) 52, 338, 415, 422, 563, 605, 1295, 1347
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 5 cut(s) 135, 421, 537, 760, 1324
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 2 cut(s) 314, 657
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 488, 517, 995, 1172
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 3 cut(s) 377, 955, 1318
CviAII CATG 5 cut(s) 559, 612, 719, 745, 1084
CviQI GTAC 3 cut(s) 377, 955, 1318
DdeI CTNAG 1 cut(s) 1037
DpnI GATC 9 cut(s) 39, 420, 618, 649, 714, 977, 1005, 1146, 1346
DpnII GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
DraIII CACNNNGTG 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 1273
EagI CGGCCG 1 cut(s) 1273
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 1015
EclXI CGGCCG 1 cut(s) 1273
Eco130I CCWWGG 3 cut(s) 660, 884, 1030
Eco147I AGGCCT 1 cut(s) 1035
Eco24I GRGCYC 1 cut(s) 1017
Eco47I GGWCC 4 cut(s) 488, 517, 995, 1172
Eco52I CGGCCG 1 cut(s) 1273
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 2 cut(s) 65, 561
EcoICRI GAGCTC 1 cut(s) 1015
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 271, 357
EcoT14I CCWWGG 3 cut(s) 660, 884, 1030
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 3 cut(s) 660, 884, 1030
FaeI CATG 5 cut(s) 562, 615, 722, 748, 1087
FaqI GGGAC 2 cut(s) 64, 1008
FatI CATG 5 cut(s) 558, 611, 718, 744, 1083
Fnu4HI GCNGC 3 cut(s) 96, 141, 1152
FokI GGATG 8 cut(s) 59, 325, 409, 422, 550, 612, 1302, 1354
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 3 cut(s) 96, 141, 1152
FspBI CTAG 3 cut(s) 827, 905, 1262
GluI GCNGC 3 cut(s) 96, 141, 1152
GsuI CTGGAG 2 cut(s) 341, 1348
HaeIII GGCC 2 cut(s) 1035, 1275
HapII CCGG 3 cut(s) 163, 491, 523
Hin1II CATG 5 cut(s) 562, 615, 722, 748, 1087
HindIII AAGCTT 2 cut(s) 77, 729
HinfI GANTC 5 cut(s) 113, 325, 555, 788, 901
HpaII CCGG 3 cut(s) 163, 491, 523
HphI GGTGA 4 cut(s) 122, 287, 473, 715
Hpy166II GTNNAC 3 cut(s) 72, 957, 1270
Hpy188I TCNGA 9 cut(s) 84, 148, 294, 370, 554, 860, 1081, 1144, 1168
Hpy188III TCNNGA 4 cut(s) 491, 776, 905, 1348
Hpy8I GTNNAC 3 cut(s) 72, 957, 1270
Hpy99I CGWCG 1 cut(s) 1118
HpyAV CCTTC 2 cut(s) 18, 694
HpyCH4III ACNGT 5 cut(s) 376, 416, 755, 808, 1094
HpyCH4IV ACGT 2 cut(s) 1056, 1113
HpyF10VI GCNNNNNNNGC 3 cut(s) 728, 860, 1208
HpyF3I CTNAG 1 cut(s) 1037
HpySE526I ACGT 2 cut(s) 1056, 1113
Hsp92II CATG 5 cut(s) 562, 615, 722, 748, 1087
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
LmnI GCTCC 5 cut(s) 860, 1012, 1020, 1220, 1329
Lsp1109I GCAGC 3 cut(s) 107, 152, 1138
LweI GCATC 4 cut(s) 256, 347, 931, 1232
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 3 cut(s) 827, 905, 1262
MaeII ACGT 2 cut(s) 1056, 1113
MaeIII GTNAC 3 cut(s) 275, 898, 1156
MalI GATC 9 cut(s) 39, 420, 618, 649, 714, 977, 1005, 1146, 1346
MboI GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
MboII GAAGA 2 cut(s) 554, 1244
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 2 cut(s) 37, 712
MhlI GDGCHC 3 cut(s) 685, 892, 1017
MluCI AATT 5 cut(s) 62, 184, 779, 919, 1369
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 3 cut(s) 577, 591, 644
MroI TCCGGA 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 2 cut(s) 129, 872
MslI CAYNNNNRTG 1 cut(s) 1055
MspI CCGG 3 cut(s) 163, 491, 523
MspR9I CCNGG 2 cut(s) 273, 359
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 330, 583
MvaI CCWGG 2 cut(s) 273, 359
MwoI GCNNNNNNNGC 3 cut(s) 728, 860, 1208
NdeII GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
NlaIII CATG 5 cut(s) 562, 615, 722, 748, 1087
NlaIV GGNNCC 5 cut(s) 241, 891, 996, 1174, 1331
NmuCI GTSAC 3 cut(s) 275, 898, 1156
NspI RCATGY 3 cut(s) 615, 722, 1087
PceI AGGCCT 1 cut(s) 1035
PciI ACATGT 1 cut(s) 1083
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 2 cut(s) 330, 583
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 4 cut(s) 113, 325, 555, 788
PkrI GCNGC 3 cut(s) 97, 142, 1153
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
PpuMI RGGWCCY 1 cut(s) 995
PscI ACATGT 1 cut(s) 1083
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 1017
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 2 cut(s) 271, 357
PspGI CCWGG 2 cut(s) 271, 357
PspN4I GGNNCC 5 cut(s) 241, 891, 996, 1174, 1331
PspPI GGNCC 4 cut(s) 488, 517, 995, 1172
PspPPI RGGWCCY 1 cut(s) 995
PstI CTGCAG 2 cut(s) 142, 516
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 2 cut(s) 37, 712
RsaI GTAC 3 cut(s) 378, 956, 1319
RsaNI GTAC 3 cut(s) 377, 955, 1318
RseI CAYNNNNRTG 1 cut(s) 1055
SacI GAGCTC 1 cut(s) 1017
SaqAI TTAA 2 cut(s) 129, 872
SatI GCNGC 3 cut(s) 96, 141, 1152
Sau3AI GATC 9 cut(s) 37, 418, 616, 647, 712, 975, 1003, 1144, 1344
Sau96I GGNCC 4 cut(s) 488, 517, 995, 1172
SbfI CCTGCAGG 1 cut(s) 516
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 2 cut(s) 273, 359
SdaI CCTGCAGG 1 cut(s) 516
SduI GDGCHC 3 cut(s) 685, 892, 1017
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 4 cut(s) 256, 347, 931, 1232
SfcI CTRYAG 3 cut(s) 138, 512, 1066
SinI GGWCC 4 cut(s) 488, 517, 995, 1172
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 504, 961
SmoI CTYRAG 2 cut(s) 504, 961
Sse8387I CCTGCAGG 1 cut(s) 516
Sse9I AATT 5 cut(s) 62, 184, 779, 919, 1369
SseBI AGGCCT 1 cut(s) 1035
SsiI CCGC 1 cut(s) 988
SspMI CTAG 3 cut(s) 827, 905, 1262
SstI GAGCTC 1 cut(s) 1017
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 2 cut(s) 271, 357
StyI CCWWGG 3 cut(s) 660, 884, 1030
TaaI ACNGT 5 cut(s) 376, 416, 755, 808, 1094
TaiI ACGT 2 cut(s) 1059, 1116
TaqI TCGA 5 cut(s) 199, 867, 1006, 1116, 1347
TasI AATT 5 cut(s) 62, 184, 779, 919, 1369
TatI WGTACW 2 cut(s) 954, 1317
TfiI GAWTC 4 cut(s) 113, 325, 555, 788
Tru1I TTAA 2 cut(s) 129, 872
Tru9I TTAA 2 cut(s) 129, 872
TscAI CASTG 5 cut(s) 142, 421, 544, 760, 1331
TseFI GTSAC 3 cut(s) 275, 898, 1156
TseI GCWGC 3 cut(s) 95, 140, 1151
Tsp45I GTSAC 3 cut(s) 275, 898, 1156
TspDTI ATGAA 5 cut(s) 17, 36, 195, 547, 1111
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 5 cut(s) 142, 421, 544, 760, 1331
VpaK11BI GGWCC 4 cut(s) 488, 517, 995, 1172
VspI ATTAAT 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 2 cut(s) 184, 779
XbaI TCTAGA 1 cut(s) 904
XceI RCATGY 3 cut(s) 615, 722, 1087
XcmI CCANNNNNNNNNTGG 2 cut(s) 476, 600
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 3 cut(s) 827, 905, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.