Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Forward (+)

68310255 .. 68314754

Gene Structure 4500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG484400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGTTGTGACCGCGCCGGGTGTATCGGAAACATTTGAAATCATAAGAAAACCGGATGATTCAAGCCGGGTACGGATCAAAGCACCCAATGGATTCTTCTTGCAGGCGAAGACAGAGGTGTTGGTTACAGCTGATTATGCAGAGAGTAGTAGTGGATGGGGAGACAATGATCCTTCTGTTTTTGTGATTACCATTTCTGGACGTTTGCAGGGGGAGTTTCAAATAACAAATGGTTATGGCAAATTGGCTCCTAAAGTCATGACGGAGCACTGGAGGACATTCATCGTTGAAGACGACTTTGACTTCATATCAAAAAATGGATTGAACGCAGTGAGAATACCAGTTGGTTGGTGGATATCAAGCGACCCAAACCCTCCACACCCTTATGTTGGGGGTTCCTTGAAAGCCTTGGACAATGCCTTCCTCTGGTCACAGAAATATGGATTGAAGGTAATAATTGACCTGCATGCAGCACCAGGATCTCAAAATGGTTATGAACACAGTGCTTCAAGAGATGGATCTCAGGAATGGGGCCAAACCGATGCTAACATACAGCAGACAGTTGATGTCATCGAGTTCTTGACTGCAAGGTACGCAAAGAGTCCAAGCCTATACGCAGTTGAGCTCATCAACGAACCACTCTCCCCAGGAACTTCTCTGCAGAACGTGACCACATACTACAAGGCTGGTTATGCTGCGGTTCGCAAGCACTCTTCCACAGCGTTCGTTGTGTTCTCGAACAGACTAGGACCAAGGGAACCGACTGAGCTTTTTCCTGTTGCCAGTGGCTTGGAGAGAGTCGTCATTGATGTCCATTACTATAACCTCTTTGAGAGTGCTTTTGACAACTTGACTGTCCAACAGAACATCGACTTCATCTACACTAATCGGACTACAGATTTGAACACTGTTACCACATCGAATGGCCCTCTCACTTTTGTTGGTGAATGGGTAGCTGAATGGAATTTGAGAGATGCAACAAAGGAGGATTACCAAAGATTTGCTAAGGCTCAGTTAGATGTCTGGGGGCGAGCAACATTTGGGTGGGCTTATTGGACTCTTAGGAACGTCAATAACCATTGGAGTCTTGAGTGGATGATAAAGAATGGTTACATAAATCTGCTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

377

Amino Acids

42.37

Weight (kDa)

5.34

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7910	PF25490	1 - 66	5.8e-21	Domain of unknown function (DUF7910)
Cellulase	PF00150	90 - 357	5.4e-22	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	15, 701
AclWI	GGATC	4 cut(s)	86, 167, 490, 529
AcsI	RAATTY	1 cut(s)	967
AfaI	GTAC	2 cut(s)	75, 596
AfiI	CCNNNNNNNGG	2 cut(s)	392, 429
AgsI	TTSAA	9 cut(s)	41, 66, 224, 293, 328, 406, 451, 513, 907
AjnI	CCWGG	2 cut(s)	478, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	134, 628, 772, 959
AluI	AGCT	4 cut(s)	134, 628, 772, 959
Alw21I	GWGCWC	2 cut(s)	273, 630
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	86, 167, 490, 529
AoxI	GGCC	2 cut(s)	535, 928
ApeKI	GCWGC	2 cut(s)	473, 698
ApoI	RAATTY	1 cut(s)	967
ArsI	GACNNNNNNTTYG	2 cut(s)	886, 918
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	535, 752, 929
AsuC2I	CCSGG	2 cut(s)	21, 71
AsuHPI	GGTGA	1 cut(s)	959
AvaII	GGWCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	119, 300
Bbv12I	GWGCWC	2 cut(s)	273, 630
BbvI	GCAGC	2 cut(s)	485, 685
BccI	CCATC	2 cut(s)	153, 512
BciT130I	CCWGG	2 cut(s)	480, 651
BcnI	CCSGG	2 cut(s)	21, 71
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	2 cut(s)	662, 897
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	2 cut(s)	474, 699
BlsI	GCNGC	2 cut(s)	475, 700
Bme1390I	CCNGG	4 cut(s)	21, 71, 480, 651
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	3 cut(s)	535, 752, 929
BmiI	GGNNCC	4 cut(s)	252, 400, 536, 762
BmrFI	CCNGG	4 cut(s)	21, 71, 480, 651
BmsI	GCATC	2 cut(s)	535, 967
BpiI	GAAGAC	2 cut(s)	119, 300
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	1112
BpuMI	CCSGG	2 cut(s)	21, 71
BsaJI	CCNNGG	3 cut(s)	411, 649, 755
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 429
Bse1I	ACTGG	3 cut(s)	278, 344, 786
BseBI	CCWGG	2 cut(s)	480, 651
BseDI	CCNNGG	3 cut(s)	411, 649, 755
BseGI	GGATG	3 cut(s)	64, 164, 1104
BseLI	CCNNNNNNNGG	2 cut(s)	392, 429
BseMII	CTCAG	3 cut(s)	539, 759, 1028
BseNI	ACTGG	3 cut(s)	278, 344, 786
BseXI	GCAGC	2 cut(s)	485, 685
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	537, 930
BsiHKAI	GWGCWC	2 cut(s)	273, 630
BsiSI	CCGG	3 cut(s)	20, 56, 70
BslI	CCNNNNNNNGG	2 cut(s)	392, 429
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	537, 930
Bsp1286I	GDGCHC	2 cut(s)	273, 630
Bsp143I	GATC	4 cut(s)	78, 172, 482, 521
BspACI	CCGC	2 cut(s)	15, 701
BspANI	GGCC	2 cut(s)	537, 930
BspCNI	CTCAG	3 cut(s)	538, 760, 1027
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	4 cut(s)	252, 400, 536, 762
BspMAI	CTGCAG	1 cut(s)	666
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	4 cut(s)	86, 167, 490, 529
BsrI	ACTGG	3 cut(s)	278, 344, 786
BssECI	CCNNGG	3 cut(s)	411, 649, 755
BssMI	GATC	4 cut(s)	78, 172, 482, 521
BssT1I	CCWWGG	2 cut(s)	411, 755
Bst2UI	CCWGG	2 cut(s)	480, 651
Bst4CI	ACNGT	4 cut(s)	506, 565, 859, 913
Bst6I	CTCTTC	1 cut(s)	721
BstC8I	GCNNGC	4 cut(s)	108, 471, 710, 1035
BstDEI	CTNAG	5 cut(s)	525, 768, 1008, 1014, 1064
BstF5I	GGATG	3 cut(s)	64, 164, 1104
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	81, 175, 485, 524
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	4 cut(s)	78, 172, 482, 521
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 596, 695
BstNI	CCWGG	2 cut(s)	480, 651
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	4 cut(s)	19, 69, 478, 649
BstSFI	CTRYAG	2 cut(s)	662, 897
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	485, 685
BstV2I	GAAGAC	2 cut(s)	119, 300
BstX2I	RGATCY	2 cut(s)	482, 521
BstXI	CCANNNNNNTGG	2 cut(s)	351, 793
BstYI	RGATCY	2 cut(s)	482, 521
BsuRI	GGCC	2 cut(s)	537, 930
BtsCI	GGATG	3 cut(s)	64, 164, 1104
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	5 cut(s)	271, 339, 511, 793, 909
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	108, 471, 710, 1035
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	535, 752, 929
Csp6I	GTAC	2 cut(s)	74, 595
CviAII	CATG	2 cut(s)	262, 470
CviQI	GTAC	2 cut(s)	74, 595
DdeI	CTNAG	5 cut(s)	525, 768, 1008, 1014, 1064
DpnI	GATC	4 cut(s)	80, 174, 484, 523
DpnII	GATC	4 cut(s)	78, 172, 482, 521
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	411, 755
Eco24I	GRGCYC	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	752
Eco53kI	GAGCTC	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	478, 649
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	411, 755
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	2 cut(s)	411, 755
FaeI	CATG	2 cut(s)	265, 473
FatI	CATG	2 cut(s)	261, 469
Fnu4HI	GCNGC	2 cut(s)	474, 699
FokI	GGATG	3 cut(s)	71, 171, 1111
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	2 cut(s)	474, 699
FspBI	CTAG	1 cut(s)	749
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	474, 699
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	537, 930
HapII	CCGG	3 cut(s)	20, 56, 70
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	265, 473
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	6 cut(s)	62, 96, 604, 801, 1060, 1087
HpaII	CCGG	3 cut(s)	20, 56, 70
HphI	GGTGA	1 cut(s)	959
Hpy188I	TCNGA	2 cut(s)	31, 894
Hpy188III	TCNNGA	7 cut(s)	201, 262, 513, 527, 583, 739, 1091
HpyAV	CCTTC	3 cut(s)	186, 433, 445
HpyCH4III	ACNGT	4 cut(s)	506, 565, 859, 913
HpyCH4IV	ACGT	3 cut(s)	205, 669, 1071
HpyCH4V	TGCA	8 cut(s)	106, 143, 211, 469, 473, 590, 664, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 596, 695
HpyF3I	CTNAG	5 cut(s)	525, 768, 1008, 1014, 1064
HpySE526I	ACGT	3 cut(s)	205, 669, 1071
Hsp92II	CATG	2 cut(s)	265, 473
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	4 cut(s)	78, 172, 482, 521
LmnI	GCTCC	2 cut(s)	256, 268
Lsp1109I	GCAGC	2 cut(s)	485, 685
LweI	GCATC	2 cut(s)	535, 967
MaeI	CTAG	1 cut(s)	749
MaeII	ACGT	3 cut(s)	205, 669, 1071
MaeIII	GTNAC	6 cut(s)	10, 127, 432, 670, 913, 1112
MalI	GATC	4 cut(s)	80, 174, 484, 523
MboI	GATC	4 cut(s)	78, 172, 482, 521
MboII	GAAGA	4 cut(s)	91, 124, 305, 708
MflI	RGATCY	2 cut(s)	482, 521
MhlI	GDGCHC	2 cut(s)	273, 630
MluCI	AATT	3 cut(s)	245, 459, 967
MlyI	GAGTC	4 cut(s)	613, 810, 1054, 1096
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	7 cut(s)	112, 270, 387, 437, 839, 942, 982
MseI	TTAA	1 cut(s)	1132
MslI	CAYNNNNRTG	2 cut(s)	387, 1045
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	3 cut(s)	20, 56, 70
MspR9I	CCNGG	4 cut(s)	21, 71, 480, 651
MvaI	CCWGG	2 cut(s)	480, 651
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	140, 596, 695
NciI	CCSGG	2 cut(s)	21, 71
NdeII	GATC	4 cut(s)	78, 172, 482, 521
NlaIII	CATG	2 cut(s)	265, 473
NlaIV	GGNNCC	4 cut(s)	252, 400, 536, 762
NmuCI	GTSAC	3 cut(s)	10, 432, 670
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	62, 96
PkrI	GCNGC	2 cut(s)	475, 700
PleI	GAGTC	4 cut(s)	612, 809, 1054, 1095
PpsI	GAGTC	4 cut(s)	612, 809, 1054, 1095
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	478, 649
PspGI	CCWGG	2 cut(s)	478, 649
PspN4I	GGNNCC	4 cut(s)	252, 400, 536, 762
PspPI	GGNCC	3 cut(s)	535, 752, 929
PstI	CTGCAG	1 cut(s)	666
PsuI	RGATCY	2 cut(s)	482, 521
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	75, 596
RsaNI	GTAC	2 cut(s)	74, 595
RseI	CAYNNNNRTG	2 cut(s)	387, 1045
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	1132
SatI	GCNGC	2 cut(s)	474, 699
Sau3AI	GATC	4 cut(s)	78, 172, 482, 521
Sau96I	GGNCC	3 cut(s)	535, 752, 929
SchI	GAGTC	4 cut(s)	613, 810, 1054, 1096
ScrFI	CCNGG	4 cut(s)	21, 71, 480, 651
SduI	GDGCHC	2 cut(s)	273, 630
SfaNI	GCATC	2 cut(s)	535, 967
SfcI	CTRYAG	2 cut(s)	662, 897
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	387, 1045
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	3 cut(s)	245, 459, 967
SsiI	CCGC	2 cut(s)	15, 701
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	4 cut(s)	19, 69, 478, 649
StyI	CCWWGG	2 cut(s)	411, 755
TaaI	ACNGT	4 cut(s)	506, 565, 859, 913
TaiI	ACGT	3 cut(s)	208, 672, 1074
TaqI	TCGA	4 cut(s)	576, 740, 873, 923
TasI	AATT	3 cut(s)	245, 459, 967
TfiI	GAWTC	2 cut(s)	62, 96
Tru1I	TTAA	1 cut(s)	1132
Tru9I	TTAA	1 cut(s)	1132
TscAI	CASTG	5 cut(s)	278, 339, 511, 793, 916
TseFI	GTSAC	3 cut(s)	10, 432, 670
TseI	GCWGC	2 cut(s)	473, 698
Tsp45I	GTSAC	3 cut(s)	10, 432, 670
TspDTI	ATGAA	4 cut(s)	274, 298, 513, 868
TspGWI	ACGGA	2 cut(s)	91, 281
TspRI	CASTG	5 cut(s)	278, 339, 511, 793, 916
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XspI	CTAG	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.