Rh2BG262600

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
28087718 .. 28091147
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG262600.1

Sequence Viewer

Length: 1332 bp
ATGGCATACTATAATATCTACCCTGTTTTGGCTCTTTACTTGTCATGTTTTGCTTCTCTTTCATCAGCGCAGGACTTGAAGTTGCCATTAAAATCTGTGAATCTTGGGAACTGGCTTCTTGTAGAGGGTTGGATGAAACCTTCTCTCTTTGATGAAATACCTAACAAAGATCTTTTGGATGGGACAAAGGTGCAATTGAAGTCCACAAAGCTTCAGAACTATTTGGCAGCAGAAAATGGGGGTGATTCCATTGTTGTTATTAATCGCACTGCAGCCTCTGATTGGGAAACTTTCAGGTTGTGGAGGATTGATGAAAATTCTTTCAACTTTCGAGTATCAAACAAGCAGTTTGTGGGATTGTCAAGTGAGGGAACCAACAGGATAGTAGCAATGAGAGATGCACCTGGTGACACAGAAGCATTTCGGATTGTAAGGAAAGATGGCGAGCCAAATAGGATTCGCATTCAAGCATCCAATGGCTTATTTCTCCAGGCAATATCAGATACGGTACTGACAGCAGATTATGGAGGCTCGGGTTGGGATGACAGTGATCCATCCGTGTTTATTATGACAATAGTAGGCTCATTACAAGGTGAATACCAAATAGCAAATGGTTATGGTCCGGATAAAGCCCCTCAAGTCCTGCAGGACCACCGGAACTCTTACATCACTGAAGAGGATTTCAGATTCATGTCATCTAACGGCTTGAATGCTGTGAGGATACCAGTTGGATGGTGGATTGCATGTGATCCAACACCTCCAAAGCCTTTTGTTGGGGGATCATTGCAAGCCTTGGACAATGCTTTCACTTGGGCACAAAAATATGGGTTGAAGGTGATTATAGATCTACATGCAGTTCAAGCTTCCCAAAACGGCATGGAACACAGTGCAACAAGAGATGGGTATCTGGAATTTGGAGATTCCAGCATACAGGACACCGTGGAAGTTATAGATTTCCTAGCAGAAAGATATGCTAAAAATCCAGCTCTCGGAGCAATCGAGTTAATAAATGAGCCTTGGGCACCACTAGTGACTCTAGACACCCTCAAAAATTATTACAAAGCTGGTTATGATGCAATAAGGAAGTACACCTCAAGTGCTTATGTGATCCTATCAAACCGCTTGGGACCTGCTGATCGAAAGGAACTCCTCTCATTTGCCCAAGGCCTCAGTAAGGCAGTCATAGACGTGCATTACTACAGCTTGTATTCAGACATGTTCAACGGTTTTAGTGTGCAACAAAACGTCGATTTCATCTACAACCAGCGAGGTTCTGATCTCGCTGCTGTGACCACTTCTGATGGACCCCTCACTTTTGTTGGTAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

49.18

Weight (kDa)

4.93

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 55 - 193 9.7e-63 Domain of unknown function (DUF7910)
Cellulase PF00150 220 - 406 4.2e-19 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1138
AccB1I GGYRCC 1 cut(s) 1021
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 1 cut(s) 1120
AclWI GGATC 4 cut(s) 545, 743, 787, 1102
AcsI RAATTY 2 cut(s) 316, 911
AcuI CTGAAG 2 cut(s) 197, 693
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 2 cut(s) 510, 1088
AfiI CCNNNNNNNGG 5 cut(s) 28, 282, 773, 989, 1174
AflIII ACRYGT 1 cut(s) 1215
AgsI TTSAA 8 cut(s) 79, 199, 325, 467, 709, 832, 860, 1222
AhlI ACTAGT 1 cut(s) 1027
AjiI CACGTC 1 cut(s) 1189
AjnI CCWGG 2 cut(s) 403, 489
AluBI AGCT 5 cut(s) 211, 863, 986, 1064, 1203
AluI AGCT 5 cut(s) 211, 863, 986, 1064, 1203
AlwI GGATC 4 cut(s) 545, 743, 787, 1102
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 532
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 1 cut(s) 1165
ApeKI GCWGC 3 cut(s) 227, 272, 1283
ApoI RAATTY 2 cut(s) 316, 911
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 620, 649, 1127, 1304
AsuHPI GGTGA 4 cut(s) 254, 419, 605, 847
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 4 cut(s) 620, 649, 1127, 1304
BaeGI GKGCMC 2 cut(s) 817, 1024
BanI GGYRCC 1 cut(s) 1021
BbvI GCAGC 3 cut(s) 239, 284, 1270
BccI CCATC 6 cut(s) 173, 434, 562, 726, 893, 1295
BceAI ACGGC 2 cut(s) 718, 889
BciT130I CCWGG 2 cut(s) 405, 491
BciVI GTATCC 1 cut(s) 714
BcuI ACTAGT 1 cut(s) 1027
BfaI CTAG 3 cut(s) 959, 1028, 1037
BfmI CTRYAG 3 cut(s) 270, 644, 1198
BfuAI ACCTGC 1 cut(s) 1138
BfuI GTATCC 1 cut(s) 714
BglII AGATCT 2 cut(s) 169, 844
BisI GCNGC 3 cut(s) 228, 273, 1284
BlsI GCNGC 3 cut(s) 229, 274, 1285
Bme1390I CCNGG 2 cut(s) 405, 491
Bme18I GGWCC 4 cut(s) 620, 649, 1127, 1304
BmeT110I CYCGRG 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 1189
BmgT120I GGNCC 4 cut(s) 620, 649, 1127, 1304
BmiI GGNNCC 4 cut(s) 373, 1023, 1128, 1306
BmrFI CCNGG 2 cut(s) 405, 491
BmsI GCATC 3 cut(s) 388, 479, 1063
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 621, 1078
BsaBI GATNNNNATC 1 cut(s) 903
BsaJI CCNNGG 4 cut(s) 792, 939, 1016, 1162
BsaWI WCCGGW 2 cut(s) 622, 654
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 282, 773, 989, 1174
Bse1I ACTGG 2 cut(s) 116, 725
Bse3DI GCAATG 2 cut(s) 396, 782
Bse8I GATNNNNATC 1 cut(s) 903
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 2 cut(s) 405, 491
BseDI CCNNGG 4 cut(s) 792, 939, 1016, 1162
BseGI GGATG 6 cut(s) 138, 184, 470, 547, 554, 737
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 5 cut(s) 28, 282, 773, 989, 1174
BseMI GCAATG 2 cut(s) 396, 782
BseMII CTCAG 1 cut(s) 1183
BseNI ACTGG 2 cut(s) 116, 725
BseRI GAGGAG 1 cut(s) 1139
BseSI GKGCMC 2 cut(s) 817, 1024
BseXI GCAGC 3 cut(s) 239, 284, 1270
BshFI GGCC 1 cut(s) 1167
BshNI GGYRCC 1 cut(s) 1021
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 623, 655
BslFI GGGAC 2 cut(s) 196, 1140
BslI CCNNNNNNNGG 5 cut(s) 28, 282, 773, 989, 1174
BsmFI GGGAC 2 cut(s) 196, 1140
BsmI GAATGC 2 cut(s) 462, 715
BsnI GGCC 1 cut(s) 1167
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 817, 1024
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
BspACI CCGC 1 cut(s) 1120
BspANI GGCC 1 cut(s) 1167
BspCNI CTCAG 1 cut(s) 1182
BspEI TCCGGA 1 cut(s) 622
BspLI GGNNCC 4 cut(s) 373, 1023, 1128, 1306
BspMAI CTGCAG 2 cut(s) 274, 648
BspMI ACCTGC 1 cut(s) 1138
BspPI GGATC 4 cut(s) 545, 743, 787, 1102
BspT107I GGYRCC 1 cut(s) 1021
BsrDI GCAATG 2 cut(s) 396, 782
BsrI ACTGG 2 cut(s) 116, 725
BssECI CCNNGG 4 cut(s) 792, 939, 1016, 1162
BssMI GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
BssT1I CCWWGG 3 cut(s) 792, 1016, 1162
Bst2UI CCWGG 2 cut(s) 405, 491
Bst4CI ACNGT 5 cut(s) 508, 548, 887, 940, 1226
Bst6I CTCTTC 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 446, 789
BstDEI CTNAG 1 cut(s) 1169
BstDSI CCRYGG 1 cut(s) 939
BstENI CCTNNNNNAGG 1 cut(s) 1172
BstF5I GGATG 6 cut(s) 138, 184, 470, 547, 554, 737
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 8 cut(s) 172, 553, 751, 782, 847, 1110, 1138, 1279
BstMBI GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 860, 992
BstNI CCWGG 2 cut(s) 405, 491
BstNSI RCATGY 3 cut(s) 747, 854, 1219
BstSCI CCNGG 2 cut(s) 403, 489
BstSFI CTRYAG 3 cut(s) 270, 644, 1198
BstSLI GKGCMC 2 cut(s) 817, 1024
BstV1I GCAGC 3 cut(s) 239, 284, 1270
BstX2I RGATCY 2 cut(s) 169, 844
BstXI CCANNNNNNTGG 1 cut(s) 732
BstYI RGATCY 2 cut(s) 169, 844
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 1167
BtgI CCRYGG 1 cut(s) 939
BtrI CACGTC 1 cut(s) 1189
BtsCI GGATG 6 cut(s) 138, 184, 470, 547, 554, 737
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 4 cut(s) 267, 553, 669, 892
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 2 cut(s) 446, 789
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 620, 649, 1127, 1304
CsiI ACCWGGT 1 cut(s) 403
Csp6I GTAC 2 cut(s) 509, 1087
CviAII CATG 7 cut(s) 45, 691, 744, 851, 877, 1216, 1329
CviQI GTAC 2 cut(s) 509, 1087
DdeI CTNAG 1 cut(s) 1169
DpnI GATC 8 cut(s) 171, 552, 750, 781, 846, 1109, 1137, 1278
DpnII GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
DraIII CACNNNGTG 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 3 cut(s) 792, 1016, 1162
Eco147I AGGCCT 1 cut(s) 1167
Eco47I GGWCC 4 cut(s) 620, 649, 1127, 1304
Eco57I CTGAAG 2 cut(s) 197, 693
Eco88I CYCGRG 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 1172
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRII CCWGG 2 cut(s) 403, 489
EcoT14I CCWWGG 3 cut(s) 792, 1016, 1162
ErhI CCWWGG 3 cut(s) 792, 1016, 1162
FaeI CATG 7 cut(s) 48, 694, 747, 854, 880, 1219, 1332
FaqI GGGAC 2 cut(s) 196, 1140
FatI CATG 7 cut(s) 44, 690, 743, 850, 876, 1215, 1328
Fnu4HI GCNGC 3 cut(s) 228, 273, 1284
FokI GGATG 6 cut(s) 145, 191, 457, 541, 554, 744
Fsp4HI GCNGC 3 cut(s) 228, 273, 1284
FspBI CTAG 3 cut(s) 959, 1028, 1037
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 228, 273, 1284
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 1 cut(s) 1167
HapII CCGG 2 cut(s) 623, 655
HhaI GCGC 1 cut(s) 70
Hin1II CATG 7 cut(s) 48, 694, 747, 854, 880, 1219, 1332
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HindIII AAGCTT 2 cut(s) 209, 861
HinfI GANTC 6 cut(s) 100, 245, 457, 687, 920, 1033
HpaII CCGG 2 cut(s) 623, 655
HphI GGTGA 4 cut(s) 254, 419, 605, 847
Hpy166II GTNNAC 2 cut(s) 204, 1089
Hpy188I TCNGA 9 cut(s) 216, 280, 426, 502, 686, 992, 1213, 1276, 1300
Hpy188III TCNNGA 3 cut(s) 623, 908, 1037
Hpy8I GTNNAC 2 cut(s) 204, 1089
Hpy99I CGWCG 1 cut(s) 1250
HpyAV CCTTC 2 cut(s) 150, 826
HpyCH4III ACNGT 5 cut(s) 508, 548, 887, 940, 1226
HpyCH4IV ACGT 2 cut(s) 1188, 1245
HpyF10VI GCNNNNNNNGC 2 cut(s) 860, 992
HpyF3I CTNAG 1 cut(s) 1169
HpySE526I ACGT 2 cut(s) 1188, 1245
Hsp92II CATG 7 cut(s) 48, 694, 747, 854, 880, 1219, 1332
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
LmnI GCTCC 1 cut(s) 992
Lsp1109I GCAGC 3 cut(s) 239, 284, 1270
LweI GCATC 3 cut(s) 388, 479, 1063
MabI ACCWGGT 1 cut(s) 403
MaeI CTAG 3 cut(s) 959, 1028, 1037
MaeII ACGT 2 cut(s) 1188, 1245
MaeIII GTNAC 3 cut(s) 407, 1030, 1288
MalI GATC 8 cut(s) 171, 552, 750, 781, 846, 1109, 1137, 1278
MboI GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
MboII GAAGA 1 cut(s) 686
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 2 cut(s) 169, 844
MhlI GDGCHC 2 cut(s) 817, 1024
MluCI AATT 4 cut(s) 194, 316, 911, 1051
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 3 cut(s) 110, 709, 776
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 89, 261, 1004
MslI CAYNNNNRTG 1 cut(s) 1187
MspI CCGG 2 cut(s) 623, 655
MspR9I CCNGG 2 cut(s) 405, 491
MunI CAATTG 1 cut(s) 194
Mva1269I GAATGC 2 cut(s) 462, 715
MvaI CCWGG 2 cut(s) 405, 491
MwoI GCNNNNNNNGC 2 cut(s) 860, 992
NdeII GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
NlaIII CATG 7 cut(s) 48, 694, 747, 854, 880, 1219, 1332
NlaIV GGNNCC 4 cut(s) 373, 1023, 1128, 1306
NmuCI GTSAC 3 cut(s) 407, 1030, 1288
NspI RCATGY 3 cut(s) 747, 854, 1219
PceI AGGCCT 1 cut(s) 1167
PciI ACATGT 1 cut(s) 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 996
PctI GAATGC 2 cut(s) 462, 715
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 5 cut(s) 100, 245, 457, 687, 920
PkrI GCNGC 3 cut(s) 229, 274, 1285
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PpuMI RGGWCCY 1 cut(s) 1127
PscI ACATGT 1 cut(s) 1215
PshBI ATTAAT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 2 cut(s) 403, 489
PspGI CCWGG 2 cut(s) 403, 489
PspN4I GGNNCC 4 cut(s) 373, 1023, 1128, 1306
PspPI GGNCC 4 cut(s) 620, 649, 1127, 1304
PspPPI RGGWCCY 1 cut(s) 1127
PstI CTGCAG 2 cut(s) 274, 648
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 169, 844
RsaI GTAC 2 cut(s) 510, 1088
RsaNI GTAC 2 cut(s) 509, 1087
RseI CAYNNNNRTG 1 cut(s) 1187
SaqAI TTAA 3 cut(s) 89, 261, 1004
SatI GCNGC 3 cut(s) 228, 273, 1284
Sau3AI GATC 8 cut(s) 169, 550, 748, 779, 844, 1107, 1135, 1276
Sau96I GGNCC 4 cut(s) 620, 649, 1127, 1304
SbfI CCTGCAGG 1 cut(s) 648
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 2 cut(s) 405, 491
SdaI CCTGCAGG 1 cut(s) 648
SduI GDGCHC 2 cut(s) 817, 1024
SexAI ACCWGGT 1 cut(s) 403
SfaNI GCATC 3 cut(s) 388, 479, 1063
SfcI CTRYAG 3 cut(s) 270, 644, 1198
SinI GGWCC 4 cut(s) 620, 649, 1127, 1304
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 2 cut(s) 636, 1093
SmoI CTYRAG 2 cut(s) 636, 1093
SpeI ACTAGT 1 cut(s) 1027
Sse8387I CCTGCAGG 1 cut(s) 648
Sse9I AATT 4 cut(s) 194, 316, 911, 1051
SseBI AGGCCT 1 cut(s) 1167
SsiI CCGC 1 cut(s) 1120
SspMI CTAG 3 cut(s) 959, 1028, 1037
StuI AGGCCT 1 cut(s) 1167
StyD4I CCNGG 2 cut(s) 403, 489
StyI CCWWGG 3 cut(s) 792, 1016, 1162
TaaI ACNGT 5 cut(s) 508, 548, 887, 940, 1226
TaiI ACGT 2 cut(s) 1191, 1248
TaqI TCGA 4 cut(s) 331, 999, 1138, 1248
TasI AATT 4 cut(s) 194, 316, 911, 1051
TatI WGTACW 1 cut(s) 1086
TfiI GAWTC 5 cut(s) 100, 245, 457, 687, 920
Tru1I TTAA 3 cut(s) 89, 261, 1004
Tru9I TTAA 3 cut(s) 89, 261, 1004
TscAI CASTG 4 cut(s) 274, 553, 676, 892
TseFI GTSAC 3 cut(s) 407, 1030, 1288
TseI GCWGC 3 cut(s) 227, 272, 1283
Tsp45I GTSAC 3 cut(s) 407, 1030, 1288
TspDTI ATGAA 6 cut(s) 51, 149, 168, 327, 679, 1243
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 4 cut(s) 274, 553, 676, 892
VpaK11BI GGWCC 4 cut(s) 620, 649, 1127, 1304
VspI ATTAAT 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 1172
XapI RAATTY 2 cut(s) 316, 911
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 3 cut(s) 747, 854, 1219
XcmI CCANNNNNNNNNTGG 2 cut(s) 608, 732
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 3 cut(s) 959, 1028, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.