Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Forward (+)

28049479 .. 28052216

Gene Structure 2738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG261100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCATACTATAATATCTACCCTGTTTTGGTTCTTTACTTGTCATGTTTTGCTTCTCTTTCATCAGCGCAGAACTTGAAGTTGCCATTAAAATCTGTGAATCTTGGGAACTGGCTTGTTGTAGAGGGTTGGATGAAACCTTCTCTCTTTGATAAAATACCCAACAAAGATCTTTTGGATGGGACAAAGGTGCAATTGAAGTCCACAAAGCTTCAGAACTATTTGGCTGCAGAAAATGGGGGTAATTCCATTGTTGTTATTAATCGCACTGCAGCCTCTGATTGGGAAACTTTCAGGTTGTGGAGGATCAATGAAAATTCTTTCAACTTTCGAGTATCAAACAAGCAGTTTGTGGGATTGTCACGCCAGGGAACCAACAGGATAGTAGCCATGAGAGATGCACCTGGTGACACTGAAACATTTCGGATTGTAAGAAAAGATGGCGAGCCAAATAGGATTCGCATTCAAGCATCCAATGGCTTATTTCTCCAGGCAAAATCAAATACGGTACTGACTGCAGATTATGGAGGCTCGGGTTGGGATGACGGTAATCCATCTGTGTTTATTATGACAATAGTAGGCTCATTACAAGGTGAATACCAAATAACAAATGGTTATGGTCCGGATAAAGCCCCTCAAGTCCTGCAGGACCACCGGAACTCTTACATCACTGAGGAGGATTTCAGATTCATGTCATCCAACGGCTTGAATGCTGTGAGGATACCAGTTGGATGGTGGATTGCATATGATCCAACACCTCCAAAGCCTTTTGTTGGGGGATCATTGCAAGCCTTGGACAATGCTTTCACTTGGGCACAAAAATATGGGTTGAAGGTGATTATAGATCTACATGCAGTTCAAGCTTCCCAAAATGGCATGGAACACAGTGCAACAAGAGATGGGTATCTGAAATTTGGAGATTCCAGCATACAGGACACCGTGAAAGTTATAGACTTCCTCGCAGAAAGGTCTAATGCCTTTAAATTCTCACATGCATCCTTACAACACACAACACACACACACACACATGCTAATGAAGCGAGATTGCAACCAACAAATGTGCAGATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

357

Amino Acids

39.89

Weight (kDa)

8.68

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7910	PF25490	55 - 193	9.4e-64	Domain of unknown function (DUF7910)
Cellulase	PF00150	220 - 296	5.4e-08	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	622
AclWI	GGATC	3 cut(s)	314, 743, 787
AcsI	RAATTY	3 cut(s)	316, 911, 983
AcuI	CTGAAG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	28, 282, 773
AgsI	TTSAA	7 cut(s)	79, 199, 325, 467, 709, 832, 860
AjnI	CCWGG	3 cut(s)	366, 403, 489
AluBI	AGCT	2 cut(s)	211, 863
AluI	AGCT	2 cut(s)	211, 863
AlwI	GGATC	3 cut(s)	314, 743, 787
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	622
ApeKI	GCWGC	2 cut(s)	227, 272
ApoI	RAATTY	3 cut(s)	316, 911, 983
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	620, 649
AsuHPI	GGTGA	3 cut(s)	419, 605, 847
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	620, 649
BaeGI	GKGCMC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	214, 284
BccI	CCATC	5 cut(s)	173, 434, 562, 726, 893
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	3 cut(s)	368, 405, 491
BciVI	GTATCC	1 cut(s)	714
BfmI	CTRYAG	4 cut(s)	228, 270, 516, 644
BfuI	GTATCC	1 cut(s)	714
BglII	AGATCT	2 cut(s)	169, 844
BisI	GCNGC	2 cut(s)	228, 273
BlsI	GCNGC	2 cut(s)	229, 274
Bme1390I	CCNGG	3 cut(s)	368, 405, 491
Bme18I	GGWCC	2 cut(s)	620, 649
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	620, 649
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	368, 405, 491
BmsI	GCATC	3 cut(s)	388, 479, 1004
BpmI	CTGGAG	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	903
BsaJI	CCNNGG	2 cut(s)	367, 792
BsaWI	WCCGGW	2 cut(s)	622, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 282, 773
Bse1I	ACTGG	2 cut(s)	116, 725
Bse3DI	GCAATG	1 cut(s)	782
Bse8I	GATNNNNATC	1 cut(s)	903
BseAI	TCCGGA	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	368, 405, 491
BseDI	CCNNGG	2 cut(s)	367, 792
BseGI	GGATG	7 cut(s)	138, 184, 470, 547, 695, 737, 995
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	3 cut(s)	28, 282, 773
BseMI	GCAATG	1 cut(s)	782
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	2 cut(s)	116, 725
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	214, 284
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	623, 655
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	28, 282, 773
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	2 cut(s)	462, 715
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	169, 306, 748, 779, 844
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	4 cut(s)	232, 274, 520, 648
BspPI	GGATC	3 cut(s)	314, 743, 787
BsrDI	GCAATG	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	116, 725
BssECI	CCNNGG	2 cut(s)	367, 792
BssMI	GATC	5 cut(s)	169, 306, 748, 779, 844
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	3 cut(s)	368, 405, 491
Bst4CI	ACNGT	4 cut(s)	508, 548, 887, 940
BstC8I	GCNNGC	2 cut(s)	446, 789
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	7 cut(s)	138, 184, 470, 547, 695, 737, 995
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	5 cut(s)	172, 309, 751, 782, 847
BstMBI	GATC	5 cut(s)	169, 306, 748, 779, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	860, 1037
BstNI	CCWGG	3 cut(s)	368, 405, 491
BstNSI	RCATGY	3 cut(s)	854, 995, 1031
BstSCI	CCNGG	3 cut(s)	366, 403, 489
BstSFI	CTRYAG	4 cut(s)	228, 270, 516, 644
BstSLI	GKGCMC	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	214, 284
BstX2I	RGATCY	2 cut(s)	169, 844
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	2 cut(s)	169, 844
BsuI	GTATCC	1 cut(s)	714
BtsCI	GGATG	7 cut(s)	138, 184, 470, 547, 695, 737, 995
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	4 cut(s)	267, 411, 669, 892
Cac8I	GCNNGC	2 cut(s)	446, 789
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	620, 649
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	7 cut(s)	45, 391, 691, 851, 877, 992, 1028
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	5 cut(s)	171, 308, 750, 781, 846
DpnII	GATC	5 cut(s)	169, 306, 748, 779, 844
DraI	TTTAAA	1 cut(s)	982
DraIII	CACNNNGTG	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	792
Eco47I	GGWCC	2 cut(s)	620, 649
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	366, 403, 489
EcoT14I	CCWWGG	1 cut(s)	792
EcoT22I	ATGCAT	1 cut(s)	997
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	7 cut(s)	48, 394, 694, 854, 880, 995, 1031
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	7 cut(s)	44, 390, 690, 850, 876, 991, 1027
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	228, 273
FokI	GGATG	7 cut(s)	145, 191, 457, 554, 682, 744, 982
Fsp4HI	GCNGC	2 cut(s)	228, 273
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	228, 273
GsuI	CTGGAG	1 cut(s)	473
HapII	CCGG	2 cut(s)	623, 655
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	7 cut(s)	48, 394, 694, 854, 880, 995, 1031
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	2 cut(s)	209, 861
HinfI	GANTC	4 cut(s)	100, 457, 687, 920
HpaII	CCGG	2 cut(s)	623, 655
HphI	GGTGA	3 cut(s)	419, 605, 847
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	5 cut(s)	216, 280, 426, 686, 909
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	150, 826
HpyCH4III	ACNGT	4 cut(s)	508, 548, 887, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	860, 1037
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	7 cut(s)	48, 394, 694, 854, 880, 995, 1031
HspAI	GCGC	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	169, 306, 748, 779, 844
Lsp1109I	GCAGC	2 cut(s)	214, 284
LweI	GCATC	3 cut(s)	388, 479, 1004
MabI	ACCWGGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	360, 407
MalI	GATC	5 cut(s)	171, 308, 750, 781, 846
MboI	GATC	5 cut(s)	169, 306, 748, 779, 844
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	169, 844
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	5 cut(s)	194, 244, 316, 911, 983
MmeI	TCCRAC	4 cut(s)	110, 709, 723, 776
Mph1103I	ATGCAT	1 cut(s)	997
MroI	TCCGGA	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	3 cut(s)	89, 261, 981
MslI	CAYNNNNRTG	2 cut(s)	1026, 1032
MspI	CCGG	2 cut(s)	623, 655
MspR9I	CCNGG	3 cut(s)	368, 405, 491
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	2 cut(s)	462, 715
MvaI	CCWGG	3 cut(s)	368, 405, 491
MwoI	GCNNNNNNNGC	2 cut(s)	860, 1037
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	5 cut(s)	169, 306, 748, 779, 844
NlaIII	CATG	7 cut(s)	48, 394, 694, 854, 880, 995, 1031
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	360, 407
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	3 cut(s)	854, 995, 1031
PctI	GAATGC	2 cut(s)	462, 715
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	100, 457, 687, 920
PkrI	GCNGC	2 cut(s)	229, 274
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	366, 403, 489
PspGI	CCWGG	3 cut(s)	366, 403, 489
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	620, 649
PstI	CTGCAG	4 cut(s)	232, 274, 520, 648
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	169, 844
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	1026, 1032
SaqAI	TTAA	3 cut(s)	89, 261, 981
SatI	GCNGC	2 cut(s)	228, 273
Sau3AI	GATC	5 cut(s)	169, 306, 748, 779, 844
Sau96I	GGNCC	2 cut(s)	620, 649
SbfI	CCTGCAGG	1 cut(s)	648
ScrFI	CCNGG	3 cut(s)	368, 405, 491
SdaI	CCTGCAGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	817
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	3 cut(s)	388, 479, 1004
SfcI	CTRYAG	4 cut(s)	228, 270, 516, 644
SinI	GGWCC	2 cut(s)	620, 649
SmiMI	CAYNNNNRTG	2 cut(s)	1026, 1032
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse8387I	CCTGCAGG	1 cut(s)	648
Sse9I	AATT	5 cut(s)	194, 244, 316, 911, 983
StyD4I	CCNGG	3 cut(s)	366, 403, 489
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	508, 548, 887, 940
TaqI	TCGA	1 cut(s)	331
TasI	AATT	5 cut(s)	194, 244, 316, 911, 983
TfiI	GAWTC	4 cut(s)	100, 457, 687, 920
Tru1I	TTAA	3 cut(s)	89, 261, 981
Tru9I	TTAA	3 cut(s)	89, 261, 981
TscAI	CASTG	4 cut(s)	274, 418, 676, 892
TseFI	GTSAC	2 cut(s)	360, 407
TseI	GCWGC	2 cut(s)	227, 272
Tsp45I	GTSAC	2 cut(s)	360, 407
TspDTI	ATGAA	5 cut(s)	51, 149, 327, 679, 1050
TspRI	CASTG	4 cut(s)	274, 418, 676, 892
VpaK11BI	GGWCC	2 cut(s)	620, 649
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	3 cut(s)	316, 911, 983
XceI	RCATGY	3 cut(s)	854, 995, 1031
XcmI	CCANNNNNNNNNTGG	2 cut(s)	608, 732
XmnI	GAANNNNTTC	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.