RchiOBHm_Chr7g0239891

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
65654339 .. 65658231
3893 bp
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UTR
Exon/CDS
Intron
PRQ21502

Sequence Viewer

Length: 1536 bp
ATGGCTTTCAACTCAAGAACATGGCCACTATGCTTAGTGCTCATTTCATGTATGATCTCTATTTCTTTTGGAAGAAAAATGACTGCTCAAACTTCTACTCCAGTAAAAGCAGTTAATCTCGGAGGTTGGCTACTTACAGAAGGCTGGATTAAACCTTCTCTTTTCGACGGCATTCCCAACAAGGACTTCTTGGATGGAACCGGCCTTCAGTTCAAATCAGTCACAACTGGGAAATTTCTTGCTGCTGAGAATGGAGGAGGAAGCATCATAGTTGCCAACCGAACCTCAGCTTCAGGCTGGGAAACATTCAAATTGTGGAGGATCAATGAGACCACATTTAATTTCAGGGTCTTCGGTAAACAATTTGTGGGAATTGATGTAAAGGGAAATGGAAAAGACGTGGTGGCTGTTGTGACCGCGCCAGGTGTATCGGAAACATTTGAAATCATAAGAAAACCGGATGATTCAAGCCGGGTACGGATCAAAGCACCCAACGGATTCTTCTTGCAGGCGAAGACAGAGGTGTTGGTTACAGCTGATTATGCAGAGAGTAGTAGTGGATGGGGAGACAATGATCCTTCTGTTTTTGTGATTACCATTTCTGGACGTTTGCAGGGGGAGTTTCAGATAACAAATGGTTATGGCAAATTGGCTCCTGAAGTCATGAAGGAGCACTGGAGGACATTCATTGTTGAAGAAGACTTTGACTTCATATCAAAAAATGGATTAAACGCAGTGAGAATACCAGTTGGTTGGTGGATATCAAGCGACCCAAACCCTCCACACCCTTATGTCGGGGGTTCCTTGAAAGCCTTGGATAATGCCTTCCTGTGGTCACAGAAATATGGATTGAAGGTAATAATTGACCTGCATGCAGCACCAGGATCTCAAAATGGTTATGAACACAGTGCTTCAAGAGATGGATCTCAGGAATGGGGCCAAACCGATGCTAACATACAGCAGACAGTTGATGTCATCGAGTTCTTGACTGCAAGGTATGCAAAGAGTCCAAGCCTATACGCAGTTGAGCTCATCAACGAACCACTCTCCCCAGGAACTTCTCTGCAGAACCTGACCACATACTACAAGGCTGGTTATGCTGCGGTTCGCAAGCACTCTTCCACAGCGTTCGTTGTGTTCTCGAACAGACTAGGACCAAGGGAACCGACTGAGCTTTTTCCTGTTGCCAGTGGCTTGAAGAGAGTCGTCATTGATGTCCATTACTATAACCTCTTTGAGAGTGCTTTTGACAACTTGACTGTCCAACAGAACATCGACTTCATCTACACTAATCGGACTACGGATTTGAACACTGTTACCACATCGAATGGCCCTCTCACTTTTGTTGGTGAATGGGTAGCTGAATGGAATGTGAAAGATGCAACAAAGGAGGATTACCAAAGATTTGCCAAGGCTCAGTTAGAAGTCTGGGGGCGAGCAACATTTGGGTGGGCTTATTGGACTCTTAGGAACGTCAATAACCATTGGAGTCTTGAGTGGATGATAAAGAATGGTTACATAAATCTGCTAACTTAA

Protein Analysis

511

Amino Acids

57.01

Weight (kDa)

6.42

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 60 - 200 5.8e-63 Domain of unknown function (DUF7910)
Cellulase PF00150 223 - 491 1.6e-21 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 876
AccII CGCG 1 cut(s) 419
AciI CCGC 2 cut(s) 417, 1103
AclWI GGATC 5 cut(s) 329, 488, 569, 892, 931
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 191, 276, 678
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 794, 831
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 3 cut(s) 421, 880, 1051
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 485, 517
AluBI AGCT 5 cut(s) 290, 536, 1030, 1174, 1361
AluI AGCT 5 cut(s) 290, 536, 1030, 1174, 1361
Alw21I GWGCWC 3 cut(s) 42, 675, 1032
Alw26I GTCTC 2 cut(s) 323, 561
AlwI GGATC 5 cut(s) 329, 488, 569, 892, 931
AlwNI CAGNNNCTG 1 cut(s) 1072
AoxI GGCC 4 cut(s) 23, 202, 937, 1330
ApeKI GCWGC 3 cut(s) 242, 875, 1100
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 1288, 1320
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 937, 1154, 1331
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 1361
AvaII GGWCC 1 cut(s) 1154
BalI TGGCCA 1 cut(s) 25
BanII GRGCYC 1 cut(s) 1032
BbsI GAAGAC 3 cut(s) 343, 521, 705
Bbv12I GWGCWC 3 cut(s) 42, 675, 1032
BbvCI CCTCAGC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 229, 887, 1087
BccI CCATC 3 cut(s) 188, 555, 914
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 3 cut(s) 423, 882, 1053
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 323, 561
BfaI CTAG 1 cut(s) 1151
BfmI CTRYAG 1 cut(s) 1064
BfuAI ACCTGC 1 cut(s) 876
BisI GCNGC 3 cut(s) 243, 876, 1101
BlsI GCNGC 3 cut(s) 244, 877, 1102
Bme1390I CCNGG 4 cut(s) 423, 473, 882, 1053
Bme18I GGWCC 1 cut(s) 1154
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 937, 1154, 1331
BmiI GGNNCC 5 cut(s) 199, 654, 802, 938, 1164
BmrFI CCNGG 4 cut(s) 423, 473, 882, 1053
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 273, 937, 1369
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 3 cut(s) 343, 521, 705
BpmI CTGGAG 2 cut(s) 84, 697
Bpu10I CCTNAGC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 1514
BpuMI CCSGG 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 813, 1051, 1157, 1410
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 831
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 5 cut(s) 101, 232, 680, 746, 1188
BseBI CCWGG 3 cut(s) 423, 882, 1053
BseDI CCNNGG 4 cut(s) 813, 1051, 1157, 1410
BseGI GGATG 4 cut(s) 199, 466, 566, 1506
BseLI CCNNNNNNNGG 2 cut(s) 794, 831
BseMII CTCAG 5 cut(s) 237, 300, 941, 1161, 1430
BseNI ACTGG 5 cut(s) 101, 232, 680, 746, 1188
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 229, 887, 1087
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 25, 204, 939, 1332
BsiHKAI GWGCWC 3 cut(s) 42, 675, 1032
BsiSI CCGG 3 cut(s) 201, 458, 472
BslI CCNNNNNNNGG 2 cut(s) 794, 831
BsmAI GTCTC 2 cut(s) 323, 561
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 25, 204, 939, 1332
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 42, 675, 1032
Bsp143I GATC 6 cut(s) 54, 321, 480, 574, 884, 923
BspACI CCGC 2 cut(s) 417, 1103
BspANI GGCC 4 cut(s) 25, 204, 939, 1332
BspCNI CTCAG 5 cut(s) 238, 299, 940, 1162, 1429
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 5 cut(s) 199, 654, 802, 938, 1164
BspMAI CTGCAG 1 cut(s) 1068
BspMI ACCTGC 1 cut(s) 876
BspPI GGATC 5 cut(s) 329, 488, 569, 892, 931
BspTNI GGTCTC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 5 cut(s) 101, 232, 680, 746, 1188
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 813, 1051, 1157, 1410
BssMI GATC 6 cut(s) 54, 321, 480, 574, 884, 923
BssT1I CCWWGG 3 cut(s) 813, 1157, 1410
Bst2UI CCWGG 3 cut(s) 423, 882, 1053
Bst4CI ACNGT 4 cut(s) 908, 967, 1261, 1315
Bst6I CTCTTC 2 cut(s) 1123, 1193
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 4 cut(s) 510, 873, 1112, 1437
BstDEI CTNAG 7 cut(s) 34, 246, 286, 927, 1170, 1416, 1466
BstF5I GGATG 4 cut(s) 199, 466, 566, 1506
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 6 cut(s) 57, 324, 483, 577, 887, 926
BstMAI GTCTC 2 cut(s) 323, 561
BstMBI GATC 6 cut(s) 54, 321, 480, 574, 884, 923
BstMWI GCNNNNNNNGC 3 cut(s) 542, 998, 1097
BstNI CCWGG 3 cut(s) 423, 882, 1053
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 4 cut(s) 421, 471, 880, 1051
BstSFI CTRYAG 1 cut(s) 1064
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 3 cut(s) 229, 887, 1087
BstV2I GAAGAC 3 cut(s) 343, 521, 705
BstX2I RGATCY 2 cut(s) 884, 923
BstXI CCANNNNNNTGG 1 cut(s) 753
BstYI RGATCY 2 cut(s) 884, 923
BsuRI GGCC 4 cut(s) 25, 204, 939, 1332
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 4 cut(s) 199, 466, 566, 1506
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 5 cut(s) 673, 741, 913, 1195, 1311
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 4 cut(s) 510, 873, 1112, 1437
CaiI CAGNNNCTG 1 cut(s) 1072
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 937, 1154, 1331
Csp6I GTAC 1 cut(s) 476
CviAII CATG 4 cut(s) 21, 48, 664, 872
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 7 cut(s) 34, 246, 286, 927, 1170, 1416, 1466
DpnI GATC 6 cut(s) 56, 323, 482, 576, 886, 925
DpnII GATC 6 cut(s) 54, 321, 480, 574, 884, 923
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 1123, 1193
EarI CTCTTC 2 cut(s) 1123, 1193
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 3 cut(s) 813, 1157, 1410
Eco24I GRGCYC 1 cut(s) 1032
Eco31I GGTCTC 1 cut(s) 323
Eco32I GATATC 1 cut(s) 762
Eco47I GGWCC 1 cut(s) 1154
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 3 cut(s) 191, 276, 678
EcoICRI GAGCTC 1 cut(s) 1030
EcoRII CCWGG 3 cut(s) 421, 880, 1051
EcoRV GATATC 1 cut(s) 762
EcoT14I CCWWGG 3 cut(s) 813, 1157, 1410
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 3 cut(s) 813, 1157, 1410
FaeI CATG 4 cut(s) 24, 51, 667, 875
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 4 cut(s) 20, 47, 663, 871
Fnu4HI GCNGC 3 cut(s) 243, 876, 1101
FokI GGATG 4 cut(s) 206, 473, 573, 1513
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 3 cut(s) 243, 876, 1101
FspBI CTAG 1 cut(s) 1151
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 243, 876, 1101
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 84, 697
HaeIII GGCC 4 cut(s) 25, 204, 939, 1332
HapII CCGG 3 cut(s) 201, 458, 472
HhaI GCGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 24, 51, 667, 875
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 6 cut(s) 464, 498, 1006, 1203, 1462, 1489
HpaII CCGG 3 cut(s) 201, 458, 472
HphI GGTGA 1 cut(s) 1361
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 4 cut(s) 122, 433, 627, 1296
Hpy188III TCNNGA 9 cut(s) 15, 603, 656, 664, 915, 929, 985, 1141, 1493
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 7 cut(s) 134, 165, 215, 588, 661, 835, 847
HpyCH4III ACNGT 4 cut(s) 908, 967, 1261, 1315
HpyCH4IV ACGT 3 cut(s) 399, 607, 1473
HpyCH4V TGCA 9 cut(s) 508, 545, 613, 871, 875, 992, 1001, 1066, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 998, 1097
HpyF3I CTNAG 7 cut(s) 34, 246, 286, 927, 1170, 1416, 1466
HpySE526I ACGT 3 cut(s) 399, 607, 1473
Hsp92II CATG 4 cut(s) 24, 51, 667, 875
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 6 cut(s) 54, 321, 480, 574, 884, 923
LmnI GCTCC 2 cut(s) 658, 670
Lsp1109I GCAGC 3 cut(s) 229, 887, 1087
LweI GCATC 3 cut(s) 273, 937, 1369
MaeI CTAG 1 cut(s) 1151
MaeII ACGT 3 cut(s) 399, 607, 1473
MaeIII GTNAC 6 cut(s) 220, 412, 529, 834, 1315, 1514
MalI GATC 6 cut(s) 56, 323, 482, 576, 886, 925
MboI GATC 6 cut(s) 54, 321, 480, 574, 884, 923
MboII GAAGA 8 cut(s) 84, 343, 493, 526, 707, 710, 1110, 1210
MflI RGATCY 2 cut(s) 884, 923
MhlI GDGCHC 3 cut(s) 42, 675, 1032
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 7 cut(s) 233, 311, 340, 362, 372, 647, 861
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 4 cut(s) 1015, 1212, 1456, 1498
MmeI TCCRAC 1 cut(s) 1288
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 5 cut(s) 114, 150, 339, 728, 1534
MslI CAYNNNNRTG 2 cut(s) 789, 1447
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 201, 458, 472
MspR9I CCNGG 4 cut(s) 423, 473, 882, 1053
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 3 cut(s) 423, 882, 1053
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 542, 998, 1097
NciI CCSGG 1 cut(s) 473
NdeII GATC 6 cut(s) 54, 321, 480, 574, 884, 923
NlaIII CATG 4 cut(s) 24, 51, 667, 875
NlaIV GGNNCC 5 cut(s) 199, 654, 802, 938, 1164
NmuCI GTSAC 3 cut(s) 220, 412, 834
NspI RCATGY 1 cut(s) 875
PaeI GCATGC 1 cut(s) 875
PagI TCATGA 1 cut(s) 663
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 464, 498
PkrI GCNGC 3 cut(s) 244, 877, 1102
PleI GAGTC 4 cut(s) 1014, 1211, 1456, 1497
PpsI GAGTC 4 cut(s) 1014, 1211, 1456, 1497
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 3 cut(s) 421, 880, 1051
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 3 cut(s) 421, 880, 1051
PspN4I GGNNCC 5 cut(s) 199, 654, 802, 938, 1164
PspPI GGNCC 3 cut(s) 937, 1154, 1331
PstI CTGCAG 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 884, 923
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 2 cut(s) 789, 1447
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 5 cut(s) 114, 150, 339, 728, 1534
SatI GCNGC 3 cut(s) 243, 876, 1101
Sau3AI GATC 6 cut(s) 54, 321, 480, 574, 884, 923
Sau96I GGNCC 3 cut(s) 937, 1154, 1331
SchI GAGTC 4 cut(s) 1015, 1212, 1456, 1498
ScrFI CCNGG 4 cut(s) 423, 473, 882, 1053
SduI GDGCHC 3 cut(s) 42, 675, 1032
SfaNI GCATC 3 cut(s) 273, 937, 1369
SfcI CTRYAG 1 cut(s) 1064
SinI GGWCC 1 cut(s) 1154
SmiMI CAYNNNNRTG 2 cut(s) 789, 1447
SmlI CTYRAG 2 cut(s) 13, 1493
SmoI CTYRAG 2 cut(s) 13, 1493
SphI GCATGC 1 cut(s) 875
Sse9I AATT 7 cut(s) 233, 311, 340, 362, 372, 647, 861
SsiI CCGC 2 cut(s) 417, 1103
SspMI CTAG 1 cut(s) 1151
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 4 cut(s) 421, 471, 880, 1051
StyI CCWWGG 3 cut(s) 813, 1157, 1410
TaaI ACNGT 4 cut(s) 908, 967, 1261, 1315
TaiI ACGT 3 cut(s) 402, 610, 1476
TaqI TCGA 5 cut(s) 165, 978, 1142, 1275, 1325
TasI AATT 7 cut(s) 233, 311, 340, 362, 372, 647, 861
TfiI GAWTC 2 cut(s) 464, 498
Tru1I TTAA 5 cut(s) 114, 150, 339, 728, 1534
Tru9I TTAA 5 cut(s) 114, 150, 339, 728, 1534
TscAI CASTG 5 cut(s) 680, 741, 913, 1195, 1318
TseFI GTSAC 3 cut(s) 220, 412, 834
TseI GCWGC 3 cut(s) 242, 875, 1100
Tsp45I GTSAC 3 cut(s) 220, 412, 834
TspDTI ATGAA 6 cut(s) 36, 676, 680, 700, 915, 1270
TspGWI ACGGA 3 cut(s) 493, 510, 1316
TspRI CASTG 5 cut(s) 680, 741, 913, 1195, 1318
VpaK11BI GGWCC 1 cut(s) 1154
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 875
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XspI CTAG 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.