RLG00000000720

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
4422895 .. 4426400
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000720

Sequence Viewer

Length: 1458 bp
ATGACTGCTCAAACTTCTACTCCAGTAAAAGCAGTTAATCTCGGAGGTTGGCTACTTACAGAAGGCTGGATTAAACCTTCTCTTTTCGACGGCATTCCCAACAAGGACTTCTTGGATGGAACCGGCCTTCAGTTCAAATCAGTCACAACTGGGAAATTTCTTGCTGCTGAGAATGGAGGAGGAAGCATCATAGTTGCCAACCGAACCTCAGCTTCAGGCTGGGAAACATTCAAATTGTGGAGGATCAATGAGACCACATTTAATTTCAGGGTCTTCGGTAAACAATTTGTGGGAATTGATGTAAAGGGAAATGGAAAAGACGTGGTGGCTGTTGTGACCGCGCCGGGTGTATCGGAAACATTTGAAATCATAAGAAAACCGGATGATTCAAGCCGGGTACGAATCAAAGCACCCAATGGATTCTTCTTGCAGGCGAAGACAGAGGTGTTGGTTACAGCTGATTATGCAGAGAGTAGTAGTGGATGGGGAGACAATGATCCTTCTGTTTTTGTGATTACCATATCTGGACGTTTGCAGGGGGAGTTTCAGATAACAAATGGTTATGGCAAATTGGCTCCTGAAGTCATGAAGGAGCACTGGAGGACATTCATTGTTGAAGAAGACTTTGACTTCATATCAAAAAATGGATTAAACGCAGTGAGAATACCAGTTGGTTGGTGGATATCAAGCGACCCAAACCCTCCACGCCCTTATGTCGGGGGTTCCTTGAAAGCCTTGGACAATGCCTTCCTGTGGTCACAGAAATATGGATTGAAGGTAATAATTGACCTGCATGCAGCACCAGGATCTCAAAATGGTTATGAACACAGTGCTTCAAGAGATGGATCTCAGGAATGGGGCCAAACCGATGCTAACATACAGCAGACAGTTGATGTCATCGAGTTCTTGACTGCAAGGTATGCAAAGAGTCCAAGCCTATACGCAGTTGAGCTCATCAACGAACCACTCTCCCCAGGAACTTCTCTGCAGAACGTGACCACATACTACAAGGCTGGTTATGCTGCGGTTCGCAAGCACTCTTCCACAGCGTTCGTTGTGTTCTCAAACAGACTAGGACCAATGGAACCGACTGAGCTCTTTCCTGTTGCCAGTGGCTTGGAGAGAGTCGTTATTGATGTCCATTACTATAACCTCTTTGTGAGTGCTTTTGACAACTTGACTGTCCAACAGAACATCGACTTCATCTACACTAATCGGACTACGGATTTGAATACTATTACCACATCAAATGGCCCTCTCACTTTTGTTGGTGAATGGGTAGCTGAATGGAATTTGAGAGATGCAACAAAGGAGGATTACCAAAGATTTGCCAAGGCTCAGTTAGAAGTCTGGGGGCGAGCAACATTTGGGTGGGCTTATTGGACTCTTAGGAACGTCAATAACCATTGGAGTCTTGAGTGGATGATAAAGAATGGTTACATAAATCTGCTAACTTAA

Protein Analysis

486

Amino Acids

54.06

Weight (kDa)

5.67

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 34 - 174 5.2e-63 Domain of unknown function (DUF7910)
Cellulase PF00150 197 - 465 6.4e-21 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 798
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 339, 1025
AclWI GGATC 4 cut(s) 251, 491, 814, 853
AcsI RAATTY 2 cut(s) 155, 1291
AcuI CTGAAG 3 cut(s) 113, 198, 600
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 716, 753
AgsI TTSAA 9 cut(s) 136, 232, 365, 390, 617, 730, 775, 837, 1231
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 2 cut(s) 802, 973
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 407, 439
AluBI AGCT 5 cut(s) 212, 458, 952, 1096, 1283
AluI AGCT 5 cut(s) 212, 458, 952, 1096, 1283
Alw21I GWGCWC 3 cut(s) 597, 954, 1098
Alw26I GTCTC 2 cut(s) 245, 483
AlwI GGATC 4 cut(s) 251, 491, 814, 853
AoxI GGCC 3 cut(s) 124, 859, 1252
ApeKI GCWGC 3 cut(s) 164, 797, 1022
ApoI RAATTY 2 cut(s) 155, 1291
ArsI GACNNNNNNTTYG 2 cut(s) 1210, 1242
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 3 cut(s) 859, 1076, 1253
AsuC2I CCSGG 2 cut(s) 345, 395
AsuHPI GGTGA 1 cut(s) 1283
AvaII GGWCC 1 cut(s) 1076
BanII GRGCYC 2 cut(s) 954, 1098
BbsI GAAGAC 3 cut(s) 265, 443, 627
Bbv12I GWGCWC 3 cut(s) 597, 954, 1098
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 151, 809, 1009
BccI CCATC 3 cut(s) 110, 477, 836
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 804, 975
BcnI CCSGG 2 cut(s) 345, 395
BcoDI GTCTC 2 cut(s) 245, 483
BfaI CTAG 1 cut(s) 1073
BfmI CTRYAG 1 cut(s) 986
BfuAI ACCTGC 1 cut(s) 798
BisI GCNGC 3 cut(s) 165, 798, 1023
BlsI GCNGC 3 cut(s) 166, 799, 1024
Bme1390I CCNGG 4 cut(s) 345, 395, 804, 975
Bme18I GGWCC 1 cut(s) 1076
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 859, 1076, 1253
BmiI GGNNCC 5 cut(s) 121, 576, 724, 860, 1086
BmrFI CCNGG 4 cut(s) 345, 395, 804, 975
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 195, 859, 1291
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 3 cut(s) 265, 443, 627
BpmI CTGGAG 2 cut(s) 6, 619
Bpu10I CCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 1436
BpuMI CCSGG 2 cut(s) 345, 395
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 735, 973, 1332
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 716, 753
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 5 cut(s) 23, 154, 602, 668, 1110
BseBI CCWGG 2 cut(s) 804, 975
BseDI CCNNGG 3 cut(s) 735, 973, 1332
BseGI GGATG 4 cut(s) 121, 388, 488, 1428
BseLI CCNNNNNNNGG 2 cut(s) 716, 753
BseMII CTCAG 5 cut(s) 159, 222, 863, 1083, 1352
BseNI ACTGG 5 cut(s) 23, 154, 602, 668, 1110
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 151, 809, 1009
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 126, 861, 1254
BsiHKAI GWGCWC 3 cut(s) 597, 954, 1098
BsiSI CCGG 4 cut(s) 123, 344, 380, 394
BslI CCNNNNNNNGG 2 cut(s) 716, 753
BsmAI GTCTC 2 cut(s) 245, 483
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 3 cut(s) 126, 861, 1254
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 597, 954, 1098
Bsp143I GATC 4 cut(s) 243, 496, 806, 845
BspACI CCGC 2 cut(s) 339, 1025
BspANI GGCC 3 cut(s) 126, 861, 1254
BspCNI CTCAG 5 cut(s) 160, 221, 862, 1084, 1351
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 5 cut(s) 121, 576, 724, 860, 1086
BspMAI CTGCAG 1 cut(s) 990
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 4 cut(s) 251, 491, 814, 853
BspTNI GGTCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 5 cut(s) 23, 154, 602, 668, 1110
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 735, 973, 1332
BssMI GATC 4 cut(s) 243, 496, 806, 845
BssT1I CCWWGG 2 cut(s) 735, 1332
Bst2UI CCWGG 2 cut(s) 804, 975
Bst4CI ACNGT 3 cut(s) 830, 889, 1183
Bst6I CTCTTC 1 cut(s) 1045
BstAPI GCANNNNNTGC 1 cut(s) 920
BstC8I GCNNGC 4 cut(s) 432, 795, 1034, 1359
BstDEI CTNAG 6 cut(s) 168, 208, 849, 1092, 1338, 1388
BstF5I GGATG 4 cut(s) 121, 388, 488, 1428
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 4 cut(s) 246, 499, 809, 848
BstMAI GTCTC 2 cut(s) 245, 483
BstMBI GATC 4 cut(s) 243, 496, 806, 845
BstMWI GCNNNNNNNGC 3 cut(s) 464, 920, 1019
BstNI CCWGG 2 cut(s) 804, 975
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 4 cut(s) 343, 393, 802, 973
BstSFI CTRYAG 1 cut(s) 986
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 151, 809, 1009
BstV2I GAAGAC 3 cut(s) 265, 443, 627
BstX2I RGATCY 2 cut(s) 806, 845
BstXI CCANNNNNNTGG 2 cut(s) 675, 1117
BstYI RGATCY 2 cut(s) 806, 845
BsuRI GGCC 3 cut(s) 126, 861, 1254
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 4 cut(s) 121, 388, 488, 1428
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 4 cut(s) 595, 663, 835, 1117
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 4 cut(s) 432, 795, 1034, 1359
CciI TCATGA 1 cut(s) 585
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 859, 1076, 1253
Csp6I GTAC 1 cut(s) 398
CviAII CATG 2 cut(s) 586, 794
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 6 cut(s) 168, 208, 849, 1092, 1338, 1388
DpnI GATC 4 cut(s) 245, 498, 808, 847
DpnII GATC 4 cut(s) 243, 496, 806, 845
Eam1104I CTCTTC 1 cut(s) 1045
EarI CTCTTC 1 cut(s) 1045
Ecl136II GAGCTC 2 cut(s) 952, 1096
Eco130I CCWWGG 2 cut(s) 735, 1332
Eco24I GRGCYC 2 cut(s) 954, 1098
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 1076
Eco53kI GAGCTC 2 cut(s) 952, 1096
Eco57I CTGAAG 3 cut(s) 113, 198, 600
EcoICRI GAGCTC 2 cut(s) 952, 1096
EcoRII CCWGG 2 cut(s) 802, 973
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 735, 1332
EcoT38I GRGCYC 2 cut(s) 954, 1098
ErhI CCWWGG 2 cut(s) 735, 1332
FaeI CATG 2 cut(s) 589, 797
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 2 cut(s) 585, 793
Fnu4HI GCNGC 3 cut(s) 165, 798, 1023
FokI GGATG 4 cut(s) 128, 395, 495, 1435
FriOI GRGCYC 2 cut(s) 954, 1098
Fsp4HI GCNGC 3 cut(s) 165, 798, 1023
FspBI CTAG 1 cut(s) 1073
GlaI GCGC 1 cut(s) 342
GluI GCNGC 3 cut(s) 165, 798, 1023
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 2 cut(s) 6, 619
HaeIII GGCC 3 cut(s) 126, 861, 1254
HapII CCGG 4 cut(s) 123, 344, 380, 394
HhaI GCGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 589, 797
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 7 cut(s) 386, 402, 420, 928, 1125, 1384, 1411
HpaII CCGG 4 cut(s) 123, 344, 380, 394
HphI GGTGA 1 cut(s) 1283
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 4 cut(s) 44, 355, 549, 1218
Hpy188III TCNNGA 7 cut(s) 525, 578, 586, 837, 851, 907, 1415
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 7 cut(s) 56, 87, 137, 510, 583, 757, 769
HpyCH4III ACNGT 3 cut(s) 830, 889, 1183
HpyCH4IV ACGT 4 cut(s) 321, 529, 993, 1395
HpyCH4V TGCA 9 cut(s) 430, 467, 535, 793, 797, 914, 923, 988, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 920, 1019
HpyF3I CTNAG 6 cut(s) 168, 208, 849, 1092, 1338, 1388
HpySE526I ACGT 4 cut(s) 321, 529, 993, 1395
Hsp92II CATG 2 cut(s) 589, 797
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 4 cut(s) 243, 496, 806, 845
LmnI GCTCC 2 cut(s) 580, 592
Lsp1109I GCAGC 3 cut(s) 151, 809, 1009
LweI GCATC 3 cut(s) 195, 859, 1291
MaeI CTAG 1 cut(s) 1073
MaeII ACGT 4 cut(s) 321, 529, 993, 1395
MaeIII GTNAC 6 cut(s) 142, 334, 451, 756, 994, 1436
MalI GATC 4 cut(s) 245, 498, 808, 847
MboI GATC 4 cut(s) 243, 496, 806, 845
MboII GAAGA 6 cut(s) 265, 415, 448, 629, 632, 1032
MflI RGATCY 2 cut(s) 806, 845
MhlI GDGCHC 3 cut(s) 597, 954, 1098
MluCI AATT 8 cut(s) 155, 233, 262, 284, 294, 569, 783, 1291
MlyI GAGTC 4 cut(s) 937, 1134, 1378, 1420
MmeI TCCRAC 1 cut(s) 1210
MseI TTAA 5 cut(s) 36, 72, 261, 650, 1456
MslI CAYNNNNRTG 1 cut(s) 1369
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 4 cut(s) 123, 344, 380, 394
MspR9I CCNGG 4 cut(s) 345, 395, 804, 975
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 2 cut(s) 804, 975
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 464, 920, 1019
NciI CCSGG 2 cut(s) 345, 395
NdeII GATC 4 cut(s) 243, 496, 806, 845
NlaIII CATG 2 cut(s) 589, 797
NlaIV GGNNCC 5 cut(s) 121, 576, 724, 860, 1086
NmuCI GTSAC 4 cut(s) 142, 334, 756, 994
NspI RCATGY 1 cut(s) 797
PaeI GCATGC 1 cut(s) 797
PagI TCATGA 1 cut(s) 585
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 386, 402, 420
PkrI GCNGC 3 cut(s) 166, 799, 1024
PleI GAGTC 4 cut(s) 936, 1133, 1378, 1419
PpsI GAGTC 4 cut(s) 936, 1133, 1378, 1419
Psp124BI GAGCTC 2 cut(s) 954, 1098
Psp6I CCWGG 2 cut(s) 802, 973
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 2 cut(s) 802, 973
PspN4I GGNNCC 5 cut(s) 121, 576, 724, 860, 1086
PspPI GGNCC 3 cut(s) 859, 1076, 1253
PstI CTGCAG 1 cut(s) 990
PsuI RGATCY 2 cut(s) 806, 845
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 1369
SacI GAGCTC 2 cut(s) 954, 1098
SaqAI TTAA 5 cut(s) 36, 72, 261, 650, 1456
SatI GCNGC 3 cut(s) 165, 798, 1023
Sau3AI GATC 4 cut(s) 243, 496, 806, 845
Sau96I GGNCC 3 cut(s) 859, 1076, 1253
SchI GAGTC 4 cut(s) 937, 1134, 1378, 1420
ScrFI CCNGG 4 cut(s) 345, 395, 804, 975
SduI GDGCHC 3 cut(s) 597, 954, 1098
SfaNI GCATC 3 cut(s) 195, 859, 1291
SfcI CTRYAG 1 cut(s) 986
SinI GGWCC 1 cut(s) 1076
SmiMI CAYNNNNRTG 1 cut(s) 1369
SmlI CTYRAG 1 cut(s) 1415
SmoI CTYRAG 1 cut(s) 1415
SphI GCATGC 1 cut(s) 797
Sse9I AATT 8 cut(s) 155, 233, 262, 284, 294, 569, 783, 1291
SsiI CCGC 2 cut(s) 339, 1025
SspMI CTAG 1 cut(s) 1073
SstI GAGCTC 2 cut(s) 954, 1098
StyD4I CCNGG 4 cut(s) 343, 393, 802, 973
StyI CCWWGG 2 cut(s) 735, 1332
TaaI ACNGT 3 cut(s) 830, 889, 1183
TaiI ACGT 4 cut(s) 324, 532, 996, 1398
TaqI TCGA 3 cut(s) 87, 900, 1197
TasI AATT 8 cut(s) 155, 233, 262, 284, 294, 569, 783, 1291
TfiI GAWTC 3 cut(s) 386, 402, 420
Tru1I TTAA 5 cut(s) 36, 72, 261, 650, 1456
Tru9I TTAA 5 cut(s) 36, 72, 261, 650, 1456
TscAI CASTG 4 cut(s) 602, 663, 835, 1117
TseFI GTSAC 4 cut(s) 142, 334, 756, 994
TseI GCWGC 3 cut(s) 164, 797, 1022
Tsp45I GTSAC 4 cut(s) 142, 334, 756, 994
TspDTI ATGAA 5 cut(s) 598, 602, 622, 837, 1192
TspGWI ACGGA 1 cut(s) 1238
TspRI CASTG 4 cut(s) 602, 663, 835, 1117
VpaK11BI GGWCC 1 cut(s) 1076
XapI RAATTY 2 cut(s) 155, 1291
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 675
XspI CTAG 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.