Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Reverse (-)

3064985 .. 3069717

Gene Structure 4733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCTTTCAACTCAAGAACATGGCCACTATGCTTAGTGCTCATTTCATGTATGATCTCTATTTCTTTTGGAAGAAAAATGACTGCTCAAACTTGTACTCCAGTAAAAGCAGTTAATCTCGGAGGTTGGCTACTTACAGAAGGCTGGATTAAACCTTCTCTTTTCGACGGCATTCCCAACAAGGACTTCTTGGATGGAACAGGCCTTCAGTTCAAATCAGTCACAACTGGGAAATTTCTTGCTGCTGAGAATGGAGGAGGAAGCATCATAGTTGCCAACCGAACCTCAGCTTCAGGCTGGGAAACATTCAAATTGTGGAGGATCAATGAGACCACATTTAATTTCAGGGTCTTCGGCAAACAATTTGTGGGAATTGATGTAAAGGGAAATGGAAAAGACGTGGTGGCTGTTGTGAGCGCGCCGGGTGTATCGGAAACATTTGAAATCATAAGAAAACCGGAAGATTCAAGCCGGGTACGGATCAAAGCACCCAATGGATTCTTCTTGCAGGCGAAGACAGAGGTGTTGGTTACAGCTGATTATGCAGAGAGTAGTAGTGGATGGGGAGACAATGATCCTTCTGTTTTTGTGATTACCATTTCTGGACGTTTGCAGGGGGAGTTTCAAATAACAAATGGTTATGGCAAATTGGCTCCTAAAGTCATGAAGGAGCACTGGAGGACATTCATTGTTGAAGAAGACTTTCACTTCATATCAAAAAATCGATTAAACGCAGTGAGAATACCAGTTGGTTGGTGGATATCAAGCGACCCAAACCCTCCACACCCTTATGTTGGGGGTTCCTTGAAAGCCTTGGACAATGCCTTCCTGTGGTCACAGAAATATGGATTGAAGGTAATAATTGACCTGCATGCAGCACCAGGATCTCAAAATGGTTTTGAACACAGTGCTTCAAGGGATGGATCTCAGGAATGGGGCCAAACCGATTCTAACATACAGCAGACAGTTGATGTCATCGAGTTCTTGACTGCAAGGATACACAATCGCAGTATGCAAAGAGTCCAAGCCTATACGCGGTTGAGCTCATCAACGAACCACTCTCCCCAGAACTTCTCTGCAGAACGTGACCACATACTACAAGGTGAATGGGTAGCTGAATGGAATGTGAGAGATGCAACAAAGGAGGATTACCAAAGATTTGCCAAGGCTCAGTTAGAAGTATGGGGGCGAGCAACATTTGGGTGGGCTTATTGGACTCTTAGGAACGTCAATAACCATTGGAGTCTTGAGTGGATGATAAAGAATGGTTACATAAATCTGCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

429

Amino Acids

48.21

Weight (kDa)

8.8

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7910	PF25490	60 - 200	5.8e-63	Domain of unknown function (DUF7910)
Cellulase	PF00150	222 - 312	1.1e-06	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	876
AccII	CGCG	2 cut(s)	419, 1036
AciI	CCGC	1 cut(s)	1036
AclWI	GGATC	5 cut(s)	329, 488, 569, 892, 931
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	191, 276
AfaI	GTAC	2 cut(s)	97, 477
AfiI	CCNNNNNNNGG	3 cut(s)	794, 831, 1035
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	880
AjuI	GAANNNNNNNTTGG	4 cut(s)	170, 202, 485, 517
AluBI	AGCT	4 cut(s)	290, 536, 1044, 1115
AluI	AGCT	4 cut(s)	290, 536, 1044, 1115
Alw21I	GWGCWC	3 cut(s)	42, 675, 1046
Alw26I	GTCTC	2 cut(s)	323, 561
AlwI	GGATC	5 cut(s)	329, 488, 569, 892, 931
AoxI	GGCC	3 cut(s)	23, 202, 937
ApeKI	GCWGC	2 cut(s)	242, 875
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	2 cut(s)	419, 421
AspS9I	GGNCC	1 cut(s)	937
AsuC2I	CCSGG	2 cut(s)	423, 473
AsuHPI	GGTGA	1 cut(s)	1115
BalI	TGGCCA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	1046
BbsI	GAAGAC	3 cut(s)	343, 521, 705
Bbv12I	GWGCWC	3 cut(s)	42, 675, 1046
BbvCI	CCTCAGC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	229, 887
BccI	CCATC	3 cut(s)	188, 555, 914
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	882
BciVI	GTATCC	1 cut(s)	990
BcnI	CCSGG	2 cut(s)	423, 473
BcoDI	GTCTC	2 cut(s)	323, 561
BfmI	CTRYAG	1 cut(s)	1077
BfuAI	ACCTGC	1 cut(s)	876
BfuI	GTATCC	1 cut(s)	990
BisI	GCNGC	2 cut(s)	243, 876
BlsI	GCNGC	2 cut(s)	244, 877
Bme1390I	CCNGG	3 cut(s)	423, 473, 882
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	937
BmiI	GGNNCC	3 cut(s)	654, 802, 938
BmrFI	CCNGG	3 cut(s)	423, 473, 882
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	273, 1123
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	3 cut(s)	343, 521, 705
BpmI	CTGGAG	2 cut(s)	84, 697
Bpu10I	CCTNAGC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	1268
BpuMI	CCSGG	2 cut(s)	423, 473
Bsa29I	ATCGAT	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	813, 1164
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	794, 831, 1035
Bse1I	ACTGG	4 cut(s)	101, 232, 680, 746
BseBI	CCWGG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	813, 1164
BseGI	GGATG	4 cut(s)	199, 566, 925, 1260
BseLI	CCNNNNNNNGG	3 cut(s)	794, 831, 1035
BseMII	CTCAG	4 cut(s)	237, 300, 941, 1184
BseNI	ACTGG	4 cut(s)	101, 232, 680, 746
BsePI	GCGCGC	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	229, 887
BseYI	CCCAGC	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	419, 1036
BshFI	GGCC	3 cut(s)	25, 204, 939
BshVI	ATCGAT	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	42, 675, 1046
BsiSI	CCGG	3 cut(s)	422, 458, 472
BslI	CCNNNNNNNGG	3 cut(s)	794, 831, 1035
BsmAI	GTCTC	2 cut(s)	323, 561
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	25, 204, 939
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	42, 675, 1046
Bsp143I	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
BspACI	CCGC	1 cut(s)	1036
BspANI	GGCC	3 cut(s)	25, 204, 939
BspCNI	CTCAG	4 cut(s)	238, 299, 940, 1183
BspDI	ATCGAT	1 cut(s)	724
BspFNI	CGCG	2 cut(s)	419, 1036
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	654, 802, 938
BspMAI	CTGCAG	1 cut(s)	1081
BspMI	ACCTGC	1 cut(s)	876
BspPI	GGATC	5 cut(s)	329, 488, 569, 892, 931
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	4 cut(s)	101, 232, 680, 746
BssECI	CCNNGG	2 cut(s)	813, 1164
BssHII	GCGCGC	1 cut(s)	417
BssMI	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
BssT1I	CCWWGG	2 cut(s)	813, 1164
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	908, 967
BstC8I	GCNNGC	4 cut(s)	419, 510, 873, 1191
BstDEI	CTNAG	6 cut(s)	34, 246, 286, 927, 1170, 1220
BstF5I	GGATG	4 cut(s)	199, 566, 925, 1260
BstFNI	CGCG	2 cut(s)	419, 1036
BstHHI	GCGC	2 cut(s)	419, 421
BstKTI	GATC	6 cut(s)	57, 324, 483, 577, 887, 926
BstMAI	GTCTC	2 cut(s)	323, 561
BstMBI	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	3 cut(s)	421, 471, 880
BstSFI	CTRYAG	1 cut(s)	1077
BstUI	CGCG	2 cut(s)	419, 1036
BstV1I	GCAGC	2 cut(s)	229, 887
BstV2I	GAAGAC	3 cut(s)	343, 521, 705
BstX2I	RGATCY	2 cut(s)	884, 923
BstXI	CCANNNNNNTGG	1 cut(s)	753
BstYI	RGATCY	2 cut(s)	884, 923
Bsu15I	ATCGAT	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	25, 204, 939
BsuTUI	ATCGAT	1 cut(s)	724
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	199, 566, 925, 1260
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	3 cut(s)	673, 741, 913
BveI	ACCTGC	1 cut(s)	876
Cac8I	GCNNGC	4 cut(s)	419, 510, 873, 1191
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	2 cut(s)	419, 421
Cfr13I	GGNCC	1 cut(s)	937
ClaI	ATCGAT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	96, 476
CviAII	CATG	4 cut(s)	21, 48, 664, 872
CviQI	GTAC	2 cut(s)	96, 476
DdeI	CTNAG	6 cut(s)	34, 246, 286, 927, 1170, 1220
DpnI	GATC	6 cut(s)	56, 323, 482, 576, 886, 925
DpnII	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
EaeI	YGGCCR	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	1044
Eco130I	CCWWGG	2 cut(s)	813, 1164
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	1046
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	1044
Eco57I	CTGAAG	2 cut(s)	191, 276
EcoICRI	GAGCTC	1 cut(s)	1044
EcoRII	CCWGG	1 cut(s)	880
EcoRV	GATATC	1 cut(s)	762
EcoT14I	CCWWGG	2 cut(s)	813, 1164
EcoT38I	GRGCYC	1 cut(s)	1046
ErhI	CCWWGG	2 cut(s)	813, 1164
FaeI	CATG	4 cut(s)	24, 51, 667, 875
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	4 cut(s)	20, 47, 663, 871
Fnu4HI	GCNGC	2 cut(s)	243, 876
FokI	GGATG	4 cut(s)	206, 573, 932, 1267
FriOI	GRGCYC	1 cut(s)	1046
Fsp4HI	GCNGC	2 cut(s)	243, 876
GlaI	GCGC	2 cut(s)	418, 420
GluI	GCNGC	2 cut(s)	243, 876
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	84, 697
HaeIII	GGCC	3 cut(s)	25, 204, 939
HapII	CCGG	3 cut(s)	422, 458, 472
HhaI	GCGC	2 cut(s)	419, 421
Hin1II	CATG	4 cut(s)	24, 51, 667, 875
Hin6I	GCGC	2 cut(s)	417, 419
HinP1I	GCGC	2 cut(s)	417, 419
HinfI	GANTC	6 cut(s)	464, 498, 947, 1020, 1216, 1243
HpaII	CCGG	3 cut(s)	422, 458, 472
HphI	GGTGA	1 cut(s)	1115
Hpy188I	TCNGA	2 cut(s)	122, 433
Hpy188III	TCNNGA	6 cut(s)	15, 603, 664, 929, 985, 1247
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	7 cut(s)	134, 165, 215, 588, 661, 835, 847
HpyCH4III	ACNGT	2 cut(s)	908, 967
HpyCH4IV	ACGT	4 cut(s)	399, 607, 1084, 1227
HpyCH4V	TGCA	9 cut(s)	508, 545, 613, 871, 875, 992, 1015, 1079, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	6 cut(s)	34, 246, 286, 927, 1170, 1220
HpySE526I	ACGT	4 cut(s)	399, 607, 1084, 1227
Hsp92II	CATG	4 cut(s)	24, 51, 667, 875
HspAI	GCGC	2 cut(s)	417, 419
Kzo9I	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
LmnI	GCTCC	2 cut(s)	658, 670
Lsp1109I	GCAGC	2 cut(s)	229, 887
LweI	GCATC	2 cut(s)	273, 1123
MaeII	ACGT	4 cut(s)	399, 607, 1084, 1227
MaeIII	GTNAC	5 cut(s)	220, 529, 834, 1085, 1268
MalI	GATC	6 cut(s)	56, 323, 482, 576, 886, 925
MboI	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
MboII	GAAGA	7 cut(s)	84, 343, 473, 493, 526, 707, 710
MflI	RGATCY	2 cut(s)	884, 923
MhlI	GDGCHC	3 cut(s)	42, 675, 1046
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	7 cut(s)	233, 311, 340, 362, 372, 647, 861
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	3 cut(s)	1029, 1210, 1252
MnlI	CCTC	9 cut(s)	116, 248, 251, 295, 312, 514, 672, 789, 1138
Mox20I	TGGCCA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	5 cut(s)	114, 150, 339, 728, 1288
MslI	CAYNNNNRTG	2 cut(s)	789, 1201
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	3 cut(s)	422, 458, 472
MspR9I	CCNGG	3 cut(s)	423, 473, 882
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	2 cut(s)	419, 1036
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	2 cut(s)	423, 473
NdeII	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
NlaIII	CATG	4 cut(s)	24, 51, 667, 875
NlaIV	GGNNCC	3 cut(s)	654, 802, 938
NmuCI	GTSAC	3 cut(s)	220, 834, 1085
NspI	RCATGY	1 cut(s)	875
PaeI	GCATGC	1 cut(s)	875
PagI	TCATGA	1 cut(s)	663
PauI	GCGCGC	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	204
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	464, 498, 947
PkrI	GCNGC	2 cut(s)	244, 877
PleI	GAGTC	3 cut(s)	1028, 1210, 1251
PpsI	GAGTC	3 cut(s)	1028, 1210, 1251
Psp124BI	GAGCTC	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	880
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	3 cut(s)	654, 802, 938
PspPI	GGNCC	1 cut(s)	937
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	2 cut(s)	884, 923
PteI	GCGCGC	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	97, 477
RsaNI	GTAC	2 cut(s)	96, 476
RseI	CAYNNNNRTG	2 cut(s)	789, 1201
SacI	GAGCTC	1 cut(s)	1046
SaqAI	TTAA	5 cut(s)	114, 150, 339, 728, 1288
SatI	GCNGC	2 cut(s)	243, 876
Sau3AI	GATC	6 cut(s)	54, 321, 480, 574, 884, 923
Sau96I	GGNCC	1 cut(s)	937
SchI	GAGTC	3 cut(s)	1029, 1210, 1252
ScrFI	CCNGG	3 cut(s)	423, 473, 882
SduI	GDGCHC	3 cut(s)	42, 675, 1046
SfaNI	GCATC	2 cut(s)	273, 1123
SfcI	CTRYAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	2 cut(s)	789, 1201
SmlI	CTYRAG	2 cut(s)	13, 1247
SmoI	CTYRAG	2 cut(s)	13, 1247
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	7 cut(s)	233, 311, 340, 362, 372, 647, 861
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	1036
SstI	GAGCTC	1 cut(s)	1046
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	421, 471, 880
StyI	CCWWGG	2 cut(s)	813, 1164
TaaI	ACNGT	2 cut(s)	908, 967
TaiI	ACGT	4 cut(s)	402, 610, 1087, 1230
TaqI	TCGA	3 cut(s)	165, 724, 978
TasI	AATT	7 cut(s)	233, 311, 340, 362, 372, 647, 861
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	464, 498, 947
Tru1I	TTAA	5 cut(s)	114, 150, 339, 728, 1288
Tru9I	TTAA	5 cut(s)	114, 150, 339, 728, 1288
TscAI	CASTG	3 cut(s)	680, 741, 913
TseFI	GTSAC	3 cut(s)	220, 834, 1085
TseI	GCWGC	2 cut(s)	242, 875
Tsp45I	GTSAC	3 cut(s)	220, 834, 1085
TspDTI	ATGAA	4 cut(s)	36, 676, 680, 700
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	3 cut(s)	680, 741, 913
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.