Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002687

Physical Location & Seq

Genomic Coordinates Forward (+)

67006693 .. 67007746

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAGTTCAAGCTTCCCAAAACGGCATGGAACACAGTGCAACAAGAGATGGCTCTCGGAGCAATTGAGTTAATAAATGAGCCTTGGGCACCACTTGTGACTCTAGACACCCTAAAAAAGTATTACAAAGCTGGTTATGATGCAGTAAGGAAGCACACCTCAAGTGCTCATGTGATCCTATCAAACCGCTTGGGACCTGCTGATCCAAAGGAGCTCCTCTCATTTGCCCAAGGCCTCAGTAAGGTAGTCATAGATGTGCATTACTACAGCTTGTATTCAGACATGTTCAACGGTTTTAGTGTGCAACAAAACATCAATTTCATATACAACCAACGAGGTTCTGATCTCGCTGCTGTGACCACTTCTAATGGACCCCTCACTTTTGTTGGGGAATGGTTTGCAGAATGGGCAATAAATGGAGCATCTATGGAAGACTACCAGAGATTTGCCAAAGCACAACTAGCTGTTTACGGCCGTGCTACTTTTGGATGGGCATACTGGTCTTACAAGTGTCAGCACAATCACTGGAGCCTCAAATGGATGATCGAGAATAACTATATAAAACTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

190

Amino Acids

21.79

Weight (kDa)

8.53

Isoelectric Point (pI)

17.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21360 FvH4_1g21360 FvH4_1g21420 FvH4_5g37950
malus_domestica	MD01G1025400.v1.1 MD08G1178600.v1.1
prunus_persica	Prupe.1G512300_v2.0.a1 Prupe.6G181100_v2.0.a1
pyrus_communis	pycom01g05350 pycom08g15290 pycom08g15300
rosa_chinensis	RchiOBHm_Chr2g0115211 RchiOBHm_Chr7g0239891
rosa_laevigata	RLG00000000720 RLG00000018166
rosa_multiflora	Rmu_co8458197.1_g000001 Rmu_sc0000540.1_g000053 Rmu_sc0002784.1_g000034 Rmu_sc0005738.1_g000014 Rmu_sc0032904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130710 Rroxscaffold_2G00130730 Rroxscaffold_3G00220700
rosa_rugosa	Rorug02G0194700 Rorug02G0194800 Rorug02G0194800 Rorug02G0194900 Rorug07G0331000
rosa_samantha	Rh2AG252900 Rh2AG253000 Rh2BG262600 Rh2CG257600 Rh2DG261100 Rh2DG261200 Rh7AG484400 Rh7BG457600 Rh7CG501900 Rh7DG470100
rosa_wichuraiana	Rw2G019750 Rw7G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	169, 197
AcoI	YGGCCR	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	10, 289
AluBI	AGCT	5 cut(s)	13, 131, 214, 270, 464
AluI	AGCT	5 cut(s)	13, 131, 214, 270, 464
Alw21I	GWGCWC	2 cut(s)	169, 216
AlwI	GGATC	2 cut(s)	169, 197
AoxI	GGCC	2 cut(s)	232, 472
ApeKI	GCWGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	194, 371
AvaII	GGWCC	2 cut(s)	194, 371
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	169, 216
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	43, 483
BceAI	ACGGC	3 cut(s)	39, 459, 487
BfaI	CTAG	2 cut(s)	104, 461
BfmI	CTRYAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	194, 371
BmgT120I	GGNCC	2 cut(s)	194, 371
BmiI	GGNNCC	4 cut(s)	90, 195, 373, 530
BmsI	GCATC	2 cut(s)	130, 431
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	83, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	503, 530
BseDI	CCNNGG	2 cut(s)	83, 229
BseGI	GGATG	2 cut(s)	494, 546
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	503, 530
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	234, 474
BshNI	GGYRCC	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	169, 216
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	234, 474
Bsp1286I	GDGCHC	3 cut(s)	91, 169, 216
Bsp143I	GATC	4 cut(s)	174, 202, 343, 543
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	234, 474
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	90, 195, 373, 530
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	169, 197
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	503, 530
BssECI	CCNNGG	2 cut(s)	83, 229
BssMI	GATC	4 cut(s)	174, 202, 343, 543
BssT1I	CCWWGG	2 cut(s)	83, 229
Bst4CI	ACNGT	2 cut(s)	37, 293
BstDEI	CTNAG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	494, 546
BstKTI	GATC	4 cut(s)	177, 205, 346, 546
BstMBI	GATC	4 cut(s)	174, 202, 343, 543
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 59, 407, 461
BstNSI	RCATGY	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	438
BstZI	CGGCCG	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	234, 474
BtsCI	GGATG	2 cut(s)	494, 546
BtsIMutI	CAGTG	2 cut(s)	42, 523
BveI	ACCTGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	194, 371
CviAII	CATG	3 cut(s)	27, 170, 283
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	4 cut(s)	176, 204, 345, 545
DpnII	GATC	4 cut(s)	174, 202, 343, 543
EaeI	YGGCCR	1 cut(s)	472
EagI	CGGCCG	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	83, 229
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	194, 371
Eco52I	CGGCCG	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	83, 229
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	83, 229
FaeI	CATG	3 cut(s)	30, 173, 286
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	3 cut(s)	26, 169, 282
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	501, 553
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	104, 461
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	234, 474
Hin1II	CATG	3 cut(s)	30, 173, 286
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	59, 280, 343
Hpy188III	TCNNGA	2 cut(s)	104, 547
Hpy8I	GTNNAC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	37, 293
HpyCH4V	TGCA	6 cut(s)	4, 40, 143, 259, 304, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 59, 407, 461
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	30, 173, 286
Kzo9I	GATC	4 cut(s)	174, 202, 343, 543
LmnI	GCTCC	5 cut(s)	59, 211, 219, 419, 528
LpnPI	CCDG	5 cut(s)	117, 210, 452, 484, 511
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	130, 431
MaeI	CTAG	2 cut(s)	104, 461
MaeIII	GTNAC	2 cut(s)	97, 355
MalI	GATC	4 cut(s)	176, 204, 345, 545
MboI	GATC	4 cut(s)	174, 202, 343, 543
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	3 cut(s)	91, 169, 216
MluCI	AATT	3 cut(s)	63, 316, 568
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	169, 227, 245, 329, 386, 542
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	10, 59, 407, 461
NdeII	GATC	4 cut(s)	174, 202, 343, 543
NlaIII	CATG	3 cut(s)	30, 173, 286
NlaIV	GGNNCC	4 cut(s)	90, 195, 373, 530
NmuCI	GTSAC	2 cut(s)	97, 355
NspI	RCATGY	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	234
PciI	ACATGT	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	194
PspN4I	GGNNCC	4 cut(s)	90, 195, 373, 530
PspPI	GGNCC	2 cut(s)	194, 371
PspPPI	RGGWCCY	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	174, 202, 343, 543
Sau96I	GGNCC	2 cut(s)	194, 371
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	3 cut(s)	91, 169, 216
SetI	ASST	9 cut(s)	15, 133, 161, 199, 216, 246, 272, 340, 466
SfaNI	GCATC	2 cut(s)	130, 431
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	194, 371
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	3 cut(s)	63, 316, 568
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	104, 461
SstI	GAGCTC	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	83, 229
TaaI	ACNGT	2 cut(s)	37, 293
TaqI	TCGA	1 cut(s)	546
TasI	AATT	3 cut(s)	63, 316, 568
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	2 cut(s)	42, 530
TseFI	GTSAC	2 cut(s)	97, 355
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	97, 355
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	42, 530
VpaK11BI	GGWCC	2 cut(s)	194, 371
XagI	CCTNNNNNAGG	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	2 cut(s)	104, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.