FvH4_6g17480

Pyruvate kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
11416481 .. 11423480
7000 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17480.t3

Sequence Viewer

Length: 1446 bp
ATGCTGGGATGTCCGGTGTGGATTGCAGTGGCTCGATTCGATTTCTCGTGGGGCGACCCGGAGTATCACCAGGAGACTTTGGATAATCTCAAGGTGGCTGTGAAGAGTACTAAGAAGCTTTGCGCGGTTATGTTGGACACTGTGGGTCCCGAGTTGCAGGTTGTAAACCGAGGCGAGAAGATCATTGAACTTAAGGGAGATGGCTTGGTTATTCTGACCCCTGATCAGGGACAAGAACCATCTTCAGAGCTTTTGCCCATCAACTTTAATGCATTGTCAAAGGCAGTGACGAAGGGAGATACCGTTTTCATAGGCCAGTACCTGTTCACTGGAAGTGAAACTACTTCTGCATGGTTGGAGGTTTCTGAAGTGAAAGGAGATGATGTTGTATGTGTAGTTAAGAATTCTGCAACACTGGCTGGTTCCTTGTTCACTTTGCATATCTCTCAAGTTCATATCGACTTGCCTACCCTCTCCGATAAAGATAAGCAGGTTATCAGTAGTTGGGGAATGCAAAACAAAATTGATTTCCTCTCACTATCATATACTCGACATGCAGAAGATGTCCGCCAAGCCCGTGAGTATCTTTCTAAGTTGGGTGACCTCAGTCAGACACAAATTTTCGCTAAGATTGAAAATATGGAGGGATTAACCCATTTTGACGAGATTCTACAAGAAGCTGATGGTATTATCCTATCCCGTGGAAATTTGGGCATTGACCTGCCACCTGAGAAGGTGTTTTTATTTCAAAAAGCTGCCCTTTACAAGTGTAACATGGCTGGAAAGCCTGCTGTGGTTACTCGCGTTGTGGATAGTATGACTGACAACTTGAGGCCAACTCGTGCTGAAGCAACTGATGTTGCAAATGCTGTATTAGACGGAAGTGATGCAATTCTTCTTGGTGCCGAGACTCTTCGTGGGTTATACCCTGTTGATACCATCTCTACTGTAGGAAAAATTTGTGCTGAGGCTGAGAAGGTCTTCAACCAAGACTTGTATTTCAAGAGGACTGTCAAATATGTTGGAGAGCCTATGACACACTTGGAATCTATTGCATCCTCAGCGGTTCGAGCAGCCATAAAGGTGAAGGCATCTGTCATTATCTGCTTCACTTCTTCAGGACGGGCTGCAAGATTGATTGCTAAGTACCGACCCACAATGCCAGTTCTTTCAGTCGTCATCCCCCGGCTCAAGACAAATCAGCTGAAGTGGAGCTTTACTGGAGCCTTTGAGGCAAGGCAATCACTCTTAGTCAGGGGTCTTTACCCTATGCTTGCTGATCCTCGACACCCTGCTGAGTCTACCAGTTCAACAAACGAGTCAGTTCTAAAGGTCGCTCTTGATCATGGAAAGGCATCAGGAGTTGTAAAGTCGCACGACCGAGTAGTTGTTTGCCAGAAAGTTGGTGATGCTTCTGTTGTCAAGATTATTGAGCTCGAAGATTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

52.58

Weight (kDa)

6.06

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 2 - 332 5.9e-87 Pyruvate kinase, barrel domain
PK_C PF02887 367 - 487 1.3e-23 Pyruvate kinase, alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 148, 481, 729
AccB1I GGYRCC 1 cut(s) 902
AccI GTMKAC 1 cut(s) 1301
AccII CGCG 2 cut(s) 125, 804
AciI CCGC 3 cut(s) 125, 568, 1064
AclWI GGATC 1 cut(s) 1274
AcsI RAATTY 4 cut(s) 403, 618, 706, 957
AcuI CTGAAG 5 cut(s) 228, 387, 867, 1101, 1226
AfaI GTAC 3 cut(s) 109, 320, 1148
AfiI CCNNNNNNNGG 2 cut(s) 226, 227
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 188, 635, 749, 985, 1003, 1311
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 7 cut(s) 118, 250, 680, 755, 1204, 1215, 1435
AluI AGCT 7 cut(s) 118, 250, 680, 755, 1204, 1215, 1435
Alw21I GWGCWC 1 cut(s) 1437
Alw26I GTCTC 2 cut(s) 68, 902
AlwI GGATC 1 cut(s) 1274
AlwNI CAGNNNCTG 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 313, 833
ApeKI GCWGC 3 cut(s) 755, 1073, 1127
ApoI RAATTY 4 cut(s) 403, 618, 706, 957
Asp700I GAANNNNTTC 1 cut(s) 980
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 2 cut(s) 59, 1186
AsuHPI GGTGA 4 cut(s) 59, 611, 1096, 1418
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 1437
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BauI CACGAG 2 cut(s) 46, 840
BbsI GAAGAC 1 cut(s) 973
Bbv12I GWGCWC 1 cut(s) 1437
BbvCI CCTCAGC 2 cut(s) 966, 1060
BbvI GCAGC 3 cut(s) 742, 1085, 1114
BccI CCATC 5 cut(s) 194, 247, 266, 677, 947
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 2 cut(s) 223, 1342
BcnI CCSGG 2 cut(s) 59, 1186
BcoDI GTCTC 2 cut(s) 68, 902
BfmI CTRYAG 1 cut(s) 948
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 3 cut(s) 148, 481, 729
BglI GCCNNNNNGGC 1 cut(s) 1232
BisI GCNGC 3 cut(s) 756, 1074, 1128
BlsI GCNGC 3 cut(s) 757, 1075, 1129
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 59, 71, 1186
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 5 cut(s) 147, 148, 424, 904, 1225
BmrFI CCNGG 3 cut(s) 59, 71, 1186
BmsI GCATC 5 cut(s) 877, 1064, 1100, 1364, 1399
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 973
BplI GAGNNNNNCTC 2 cut(s) 823, 855
BpmI CTGGAG 1 cut(s) 1242
Bpu10I CCTNAGC 2 cut(s) 966, 1060
BpuEI CTTGAG 4 cut(s) 74, 432, 850, 1175
BpuMI CCSGG 2 cut(s) 59, 1186
BsaJI CCNNGG 3 cut(s) 169, 700, 1184
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 369, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 227
Bse1I ACTGG 6 cut(s) 316, 334, 420, 1163, 1225, 1305
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 169, 700, 1184
BseGI GGATG 3 cut(s) 14, 1055, 1179
BseLI CCNNNNNNNGG 2 cut(s) 226, 227
BseMII CTCAG 6 cut(s) 619, 720, 957, 963, 1074, 1287
BseNI ACTGG 6 cut(s) 316, 334, 420, 1163, 1225, 1305
BseXI GCAGC 3 cut(s) 742, 1085, 1114
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 2 cut(s) 125, 804
Bsh1285I CGRYCG 1 cut(s) 1381
BshFI GGCC 2 cut(s) 315, 835
BshNI GGYRCC 1 cut(s) 902
BsiEI CGRYCG 1 cut(s) 1381
BsiHKAI GWGCWC 1 cut(s) 1437
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 14, 59, 1186
BslFI GGGAC 2 cut(s) 132, 243
BslI CCNNNNNNNGG 2 cut(s) 226, 227
BsmAI GTCTC 2 cut(s) 68, 902
BsmFI GGGAC 2 cut(s) 132, 243
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 2 cut(s) 315, 835
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 1437
Bsp143I GATC 4 cut(s) 180, 223, 1279, 1342
BspACI CCGC 3 cut(s) 125, 568, 1064
BspANI GGCC 2 cut(s) 315, 835
BspCNI CTCAG 6 cut(s) 618, 721, 958, 964, 1073, 1288
BspFNI CGCG 2 cut(s) 125, 804
BspLI GGNNCC 5 cut(s) 147, 148, 424, 904, 1225
BspMI ACCTGC 3 cut(s) 148, 481, 729
BspPI GGATC 1 cut(s) 1274
BspT107I GGYRCC 1 cut(s) 902
BspTI CTTAAG 1 cut(s) 191
BsrI ACTGG 6 cut(s) 316, 334, 420, 1163, 1225, 1305
BssECI CCNNGG 3 cut(s) 169, 700, 1184
BssMI GATC 4 cut(s) 180, 223, 1279, 1342
BssSI CACGAG 2 cut(s) 46, 840
Bst2BI CACGAG 2 cut(s) 46, 840
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 4 cut(s) 142, 304, 949, 1012
Bst6I CTCTTC 2 cut(s) 98, 918
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 789, 1275
BstDSI CCRYGG 1 cut(s) 700
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 3 cut(s) 14, 1055, 1179
BstFNI CGCG 2 cut(s) 125, 804
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 4 cut(s) 183, 226, 1282, 1345
BstMAI GTCTC 2 cut(s) 68, 902
BstMBI GATC 4 cut(s) 180, 223, 1279, 1342
BstMCI CGRYCG 1 cut(s) 1381
BstMWI GCNNNNNNNGC 4 cut(s) 416, 1061, 1070, 1232
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 557
BstPAI GACNNNNGTC 1 cut(s) 606
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 3 cut(s) 57, 69, 1184
BstSFI CTRYAG 1 cut(s) 948
BstUI CGCG 2 cut(s) 125, 804
BstV1I GCAGC 3 cut(s) 742, 1085, 1114
BstV2I GAAGAC 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 1403
BsuRI GGCC 2 cut(s) 315, 835
BtgI CCRYGG 1 cut(s) 700
BtsCI GGATG 3 cut(s) 14, 1055, 1179
BtsI GCAGTG 2 cut(s) 33, 291
BtsIMutI CAGTG 5 cut(s) 33, 138, 291, 327, 413
BveI ACCTGC 3 cut(s) 148, 481, 729
Cac8I GCNNGC 2 cut(s) 789, 1275
CaiI CAGNNNCTG 1 cut(s) 322
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 108, 319, 1147
CviAII CATG 4 cut(s) 351, 554, 775, 1346
CviQI GTAC 3 cut(s) 108, 319, 1147
DpnI GATC 4 cut(s) 182, 225, 1281, 1344
DpnII GATC 4 cut(s) 180, 223, 1279, 1342
Eam1104I CTCTTC 2 cut(s) 98, 918
EarI CTCTTC 2 cut(s) 98, 918
EciI GGCGGA 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 1435
Eco24I GRGCYC 1 cut(s) 1437
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 5 cut(s) 228, 387, 867, 1101, 1226
Eco88I CYCGRG 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 1435
EcoO109I RGGNCCY 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 599
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 1437
FaeI CATG 4 cut(s) 354, 557, 778, 1349
FalI AAGNNNNNCTT 4 cut(s) 744, 776, 1199, 1231
FaqI GGGAC 2 cut(s) 132, 243
FatI CATG 4 cut(s) 350, 553, 774, 1345
FbaI TGATCA 2 cut(s) 223, 1342
FblI GTMKAC 1 cut(s) 1301
Fnu4HI GCNGC 3 cut(s) 756, 1074, 1128
FokI GGATG 3 cut(s) 21, 1042, 1166
FriOI GRGCYC 1 cut(s) 1437
Fsp4HI GCNGC 3 cut(s) 756, 1074, 1128
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 756, 1074, 1128
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 1242
HaeIII GGCC 2 cut(s) 315, 835
HapII CCGG 3 cut(s) 14, 59, 1186
HhaI GCGC 1 cut(s) 125
Hin1II CATG 4 cut(s) 354, 557, 778, 1349
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 6 cut(s) 36, 667, 910, 1046, 1298, 1319
HpaII CCGG 3 cut(s) 14, 59, 1186
HphI GGTGA 4 cut(s) 59, 611, 1096, 1418
Hpy166II GTNNAC 4 cut(s) 166, 327, 432, 1302
Hpy188I TCNGA 5 cut(s) 216, 247, 367, 478, 612
Hpy188III TCNNGA 7 cut(s) 149, 1003, 1119, 1192, 1340, 1359, 1423
Hpy8I GTNNAC 4 cut(s) 166, 327, 432, 1302
HpyAV CCTTC 4 cut(s) 286, 727, 970, 1081
HpyCH4III ACNGT 4 cut(s) 142, 304, 949, 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 1061, 1070, 1232
Hsp92II CATG 4 cut(s) 354, 557, 778, 1349
HspAI GCGC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 223, 1342
Kzo9I GATC 4 cut(s) 180, 223, 1279, 1342
LmnI GCTCC 2 cut(s) 1212, 1223
Lsp1109I GCAGC 3 cut(s) 742, 1085, 1114
LweI GCATC 5 cut(s) 877, 1064, 1100, 1364, 1399
MaeIII GTNAC 4 cut(s) 286, 599, 770, 796
MalI GATC 4 cut(s) 182, 225, 1281, 1344
MboI GATC 4 cut(s) 180, 223, 1279, 1342
MboII GAAGA 8 cut(s) 115, 190, 234, 572, 887, 905, 973, 1107
MhlI GDGCHC 1 cut(s) 1437
MluCI AATT 6 cut(s) 403, 522, 618, 706, 891, 957
MlyI GAGTC 3 cut(s) 904, 1307, 1328
MmeI TCCRAC 3 cut(s) 114, 336, 1003
Mph1103I ATGCAT 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 980
MseI TTAA 4 cut(s) 192, 267, 399, 650
MslI CAYNNNNRTG 1 cut(s) 1082
MspA1I CMGCKG 2 cut(s) 1064, 1204
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 3 cut(s) 14, 59, 1186
MspR9I CCNGG 3 cut(s) 59, 71, 1186
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 125, 804
MwoI GCNNNNNNNGC 4 cut(s) 416, 1061, 1070, 1232
NciI CCSGG 2 cut(s) 59, 1186
NdeII GATC 4 cut(s) 180, 223, 1279, 1342
NlaIII CATG 4 cut(s) 354, 557, 778, 1349
NlaIV GGNNCC 5 cut(s) 147, 148, 424, 904, 1225
NmeAIII GCCGAG 1 cut(s) 931
NmuCI GTSAC 2 cut(s) 286, 599
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 557
PctI GAATGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 980
PfeI GAWTC 3 cut(s) 36, 667, 1046
PkrI GCNGC 3 cut(s) 757, 1075, 1129
PleI GAGTC 3 cut(s) 904, 1306, 1327
PpsI GAGTC 3 cut(s) 904, 1306, 1327
PpuMI RGGWCCY 1 cut(s) 146
PshAI GACNNNNGTC 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 1437
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 5 cut(s) 147, 148, 424, 904, 1225
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 1204
RsaI GTAC 3 cut(s) 109, 320, 1148
RsaNI GTAC 3 cut(s) 108, 319, 1147
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 1437
SaqAI TTAA 4 cut(s) 192, 267, 399, 650
SatI GCNGC 3 cut(s) 756, 1074, 1128
Sau3AI GATC 4 cut(s) 180, 223, 1279, 1342
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 3 cut(s) 904, 1307, 1328
ScrFI CCNGG 3 cut(s) 59, 71, 1186
SduI GDGCHC 1 cut(s) 1437
SfaNI GCATC 5 cut(s) 877, 1064, 1100, 1364, 1399
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 5 cut(s) 89, 191, 447, 829, 1190
SmoI CTYRAG 5 cut(s) 89, 191, 447, 829, 1190
Sse9I AATT 6 cut(s) 403, 522, 618, 706, 891, 957
SsiI CCGC 3 cut(s) 125, 568, 1064
SstI GAGCTC 1 cut(s) 1437
StyD4I CCNGG 3 cut(s) 57, 69, 1184
TaaI ACNGT 4 cut(s) 142, 304, 949, 1012
TaqI TCGA 7 cut(s) 34, 39, 459, 550, 1069, 1285, 1437
TaqII GACCGA 1 cut(s) 1395
TasI AATT 6 cut(s) 403, 522, 618, 706, 891, 957
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 3 cut(s) 36, 667, 1046
Tru1I TTAA 4 cut(s) 192, 267, 399, 650
Tru9I TTAA 4 cut(s) 192, 267, 399, 650
TscAI CASTG 5 cut(s) 33, 145, 291, 334, 420
TseFI GTSAC 2 cut(s) 286, 599
TseI GCWGC 3 cut(s) 755, 1073, 1127
Tsp45I GTSAC 2 cut(s) 286, 599
TspDTI ATGAA 2 cut(s) 298, 443
TspGWI ACGGA 1 cut(s) 894
TspRI CASTG 5 cut(s) 33, 145, 291, 334, 420
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 4 cut(s) 403, 618, 706, 957
XceI RCATGY 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 1301
XmnI GAANNNNTTC 1 cut(s) 980
ZrmI AGTACT 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.