RchiOBHm_Chr3g0471721

Pyruvate kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
17573328 .. 17579603
6276 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43746

Sequence Viewer

Length: 1584 bp
ATGCATTCGAATCATCTGCTTCTGGAGGAACCGATAAGGATGGCTTCGATACTGGAGCCGTCGAAGGCGAGTTTTTTCCCTGCAATGACGAAGATTGTGGGGACGCTGGGGCCGAAATCCCGATCTGCGGAGGTCATCTCTTCTTGCCTCAATGCTGGAATGTCTGTGGCCCGATTCGATTTCTCGTGGGGCAACCCGGAGTATCACCAGGAGACTTTGGACAATCTCAAGGCGGCTGTTAAGAGTACCAAGAAGCTTTGCGCGGTTATGTTGGACACTGTAGGTCCCGAATTGCAGGTTGTAAACAGAGGCGAGAAGATCATTGAACTCAAGGGAGATGGCTTGGTTATTCTTACCCCTGATCAGGGACAAGAACCATCTTCGGAGCTTTTGCCCATCAATTTTGATGGATTGTCAAAGGCAGTGACAAAGGGAGATACCGTTTTCATAGGCCAGTACCTGTTCACTGGAAGTGAAACTACTTCTGCATGGTTGGAGGTGTCTGAAGTGAAAGGAGATGATGTTGTTTGTGTGGTAAAGAATTCTGCAACATTGGCCGGTTCTTTGTTCACTTTGCATATCTCTCAAGTTCATATTGACTTGCCTACTCTCTCTGATAAAGATAAGCAGGTTATCAGTAGTTGGGGACTTAAAAACAAAATTGATTTCCTCTCACTGTCATATACACGACATGCAGAAGATGTTCGCCAAGCCCGCGAGTTCCTTTCTAAGTTGGGTGACCTCAGTCAGACACAAATTTTCGCTAAGATTGAAAATATGGAGGGATTAACCCATTTTGACGAGATTCTACAAGAAGCTGACGGTATTATCCTATCCCGTGGAAATTTGGGCATTGACCTGCCACCTGAGAAGGTGTTTTTATTTCAAAAGGCTGCCCTTTACAAGTGTAACATGGCTGGAAAGCCTGCTGTGGTTACTCGTGTTGTGGATAGTATGACCGACAACTTGAGGCCAACTCGTGCAGAAGCAACTGATGTTGCAAATGCTGTATTAGACGGAAGCGATGCAATTCTTCTCGGTGCTGAGACTCTTCGTGGGTTATACCCTGTTGATACCATCTCTACTGTTGGCAAAATTTGTGCTGAGGCAGAGAAGGTTTTTAACCAGGACTTGTATTTCAAGAGGACAGTCAAATATGTTGGAGAGCCAATGACACACTTGGAATCTATTGCATCCTCTGCGGTTCGGGCAGCCATTAAGGTGAAGGCATCTGTTATTATTTGCTTCACTTCTTCAGGACGGGCTGCAAGATTGATTGCTAAGTACCGACCCACAATGCCAGTTCTTTCAGTCGTCATCCCCCGGCTCAAGACAAATCAGCTTAAGTGGAGCTTTACTGGAGCCTTTGAGGCAAGGCAATCACTCTTAGTCAGGGGTCTTTACCCTATGCTTGCTGATCCTCGACACCCTGCCGAGTCCACCAGTTCAACAAACGAATCAGTTCTAAAGGTTGCTCTTGATCATGGAAAGGCATCAGGAGTTGTAAAGTCGCACGACCGAGTAGTTGTTTGCCAGAAAGTTGGTGATGCCTCTGTTGTCAAGATTATTGAGCTTGAAGATTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

57.4

Weight (kDa)

6.45

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 30 - 360 2.8e-87 Pyruvate kinase, barrel domain
PK_C PF02887 395 - 515 1.4e-23 Pyruvate kinase, alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 286, 619, 867
AccII CGCG 2 cut(s) 263, 717
AciI CCGC 5 cut(s) 128, 233, 263, 715, 1202
AclWI GGATC 1 cut(s) 1412
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 4 cut(s) 541, 756, 844, 1095
AcuI CTGAAG 2 cut(s) 525, 1239
AfaI GTAC 3 cut(s) 247, 458, 1286
AfiI CCNNNNNNNGG 3 cut(s) 127, 364, 365
AflII CTTAAG 1 cut(s) 1343
AgsI TTSAA 6 cut(s) 326, 773, 887, 1141, 1449, 1577
AjnI CCWGG 2 cut(s) 207, 1125
AluBI AGCT 6 cut(s) 256, 388, 818, 1342, 1353, 1573
AluI AGCT 6 cut(s) 256, 388, 818, 1342, 1353, 1573
Alw26I GTCTC 2 cut(s) 206, 1040
AlwI GGATC 1 cut(s) 1412
AlwNI CAGNNNCTG 1 cut(s) 460
AoxI GGCC 5 cut(s) 110, 168, 451, 555, 971
ApeKI GCWGC 3 cut(s) 893, 1211, 1265
ApoI RAATTY 4 cut(s) 541, 756, 844, 1095
Asp700I GAANNNNTTC 2 cut(s) 702, 1461
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 3 cut(s) 110, 169, 284
AsuC2I CCSGG 2 cut(s) 197, 1324
AsuHPI GGTGA 4 cut(s) 197, 749, 1234, 1556
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 463, 495
BauI CACGAG 3 cut(s) 184, 939, 978
BbvCI CCTCAGC 1 cut(s) 1104
BbvI GCAGC 3 cut(s) 880, 1223, 1252
BccI CCATC 6 cut(s) 34, 332, 385, 401, 404, 1085
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 209, 1127
BclI TGATCA 2 cut(s) 361, 1480
BcnI CCSGG 2 cut(s) 197, 1324
BcoDI GTCTC 2 cut(s) 206, 1040
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 1343
BfuAI ACCTGC 3 cut(s) 286, 619, 867
BglI GCCNNNNNGGC 1 cut(s) 1370
BisI GCNGC 4 cut(s) 234, 894, 1212, 1266
BlsI GCNGC 4 cut(s) 235, 895, 1213, 1267
Bme1390I CCNGG 4 cut(s) 197, 209, 1127, 1324
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 110, 169, 284
BmiI GGNNCC 5 cut(s) 30, 57, 111, 286, 1363
BmrFI CCNGG 4 cut(s) 197, 209, 1127, 1324
BmsI GCATC 5 cut(s) 1015, 1202, 1238, 1502, 1537
BoxI GACNNNNGTC 1 cut(s) 744
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 961, 993
BpmI CTGGAG 3 cut(s) 44, 74, 1380
Bpu10I CCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 5 cut(s) 212, 314, 570, 988, 1313
BpuMI CCSGG 2 cut(s) 197, 1324
BsaJI CCNNGG 2 cut(s) 838, 1322
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 507, 537
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 364, 365
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 6 cut(s) 57, 454, 472, 1301, 1363, 1443
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 2 cut(s) 209, 1127
BseDI CCNNGG 2 cut(s) 838, 1322
BseGI GGATG 3 cut(s) 45, 1193, 1317
BseLI CCNNNNNNNGG 3 cut(s) 127, 364, 365
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 4 cut(s) 757, 858, 1035, 1095
BseNI ACTGG 6 cut(s) 57, 454, 472, 1301, 1363, 1443
BseXI GCAGC 3 cut(s) 880, 1223, 1252
BseYI CCCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 263, 717
Bsh1285I CGRYCG 1 cut(s) 1519
BshFI GGCC 5 cut(s) 112, 170, 453, 557, 973
BsiEI CGRYCG 1 cut(s) 1519
BsiSI CCGG 3 cut(s) 197, 558, 1324
BslFI GGGAC 4 cut(s) 115, 270, 381, 660
BslI CCNNNNNNNGG 3 cut(s) 127, 364, 365
BsmAI GTCTC 2 cut(s) 206, 1040
BsmFI GGGAC 4 cut(s) 115, 270, 381, 660
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 5 cut(s) 112, 170, 453, 557, 973
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 5 cut(s) 122, 318, 361, 1417, 1480
BspACI CCGC 5 cut(s) 128, 233, 263, 715, 1202
BspANI GGCC 5 cut(s) 112, 170, 453, 557, 973
BspCNI CTCAG 4 cut(s) 756, 859, 1036, 1096
BspFNI CGCG 2 cut(s) 263, 717
BspLI GGNNCC 5 cut(s) 30, 57, 111, 286, 1363
BspMI ACCTGC 3 cut(s) 286, 619, 867
BspPI GGATC 1 cut(s) 1412
BspT104I TTCGAA 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 1343
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 6 cut(s) 57, 454, 472, 1301, 1363, 1443
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 838, 1322
BssMI GATC 5 cut(s) 122, 318, 361, 1417, 1480
BssSI CACGAG 3 cut(s) 184, 939, 978
Bst2BI CACGAG 3 cut(s) 184, 939, 978
Bst2UI CCWGG 2 cut(s) 209, 1127
Bst4CI ACNGT 6 cut(s) 280, 442, 678, 824, 1087, 1150
Bst6I CTCTTC 2 cut(s) 145, 1056
BstAFI CTTAAG 1 cut(s) 1343
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 715, 927, 1413
BstDEI CTNAG 8 cut(s) 729, 743, 765, 867, 1044, 1104, 1281, 1387
BstDSI CCRYGG 1 cut(s) 838
BstEII GGTNACC 1 cut(s) 737
BstF5I GGATG 3 cut(s) 45, 1193, 1317
BstFNI CGCG 2 cut(s) 263, 717
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 5 cut(s) 125, 321, 364, 1420, 1483
BstMAI GTCTC 2 cut(s) 206, 1040
BstMBI GATC 5 cut(s) 122, 318, 361, 1417, 1480
BstMCI CGRYCG 1 cut(s) 1519
BstMWI GCNNNNNNNGC 5 cut(s) 554, 714, 1199, 1208, 1370
BstNI CCWGG 2 cut(s) 209, 1127
BstNSI RCATGY 1 cut(s) 695
BstPAI GACNNNNGTC 1 cut(s) 744
BstPI GGTNACC 1 cut(s) 737
BstSCI CCNGG 4 cut(s) 195, 207, 1125, 1322
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 2 cut(s) 263, 717
BstV1I GCAGC 3 cut(s) 880, 1223, 1252
BstXI CCANNNNNNTGG 1 cut(s) 1541
BsuRI GGCC 5 cut(s) 112, 170, 453, 557, 973
BtgI CCRYGG 1 cut(s) 838
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 3 cut(s) 45, 1193, 1317
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 276, 429, 465, 674
BveI ACCTGC 3 cut(s) 286, 619, 867
Cac8I GCNNGC 3 cut(s) 715, 927, 1413
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 3 cut(s) 110, 169, 284
CseI GACGC 1 cut(s) 112
Csp6I GTAC 3 cut(s) 246, 457, 1285
CviAII CATG 4 cut(s) 489, 692, 913, 1484
CviQI GTAC 3 cut(s) 246, 457, 1285
DdeI CTNAG 8 cut(s) 729, 743, 765, 867, 1044, 1104, 1281, 1387
DpnI GATC 5 cut(s) 124, 320, 363, 1419, 1482
DpnII GATC 5 cut(s) 122, 318, 361, 1417, 1480
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 145, 1056
EarI CTCTTC 2 cut(s) 145, 1056
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 525, 1239
Eco91I GGTNACC 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 207, 1125
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 492, 695, 916, 1487
FalI AAGNNNNNCTT 4 cut(s) 28, 60, 1337, 1369
FaqI GGGAC 4 cut(s) 115, 270, 381, 660
FatI CATG 4 cut(s) 488, 691, 912, 1483
FauI CCCGC 1 cut(s) 722
FbaI TGATCA 2 cut(s) 361, 1480
Fnu4HI GCNGC 4 cut(s) 234, 894, 1212, 1266
FokI GGATG 3 cut(s) 52, 1180, 1304
Fsp4HI GCNGC 4 cut(s) 234, 894, 1212, 1266
GlaI GCGC 1 cut(s) 262
GluI GCNGC 4 cut(s) 234, 894, 1212, 1266
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 3 cut(s) 44, 74, 1380
HaeIII GGCC 5 cut(s) 112, 170, 453, 557, 973
HapII CCGG 3 cut(s) 197, 558, 1324
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 263
Hin1II CATG 4 cut(s) 492, 695, 916, 1487
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 7 cut(s) 10, 174, 805, 1048, 1184, 1436, 1457
HpaII CCGG 3 cut(s) 197, 558, 1324
HphI GGTGA 4 cut(s) 197, 749, 1234, 1556
Hpy166II GTNNAC 4 cut(s) 304, 465, 570, 1440
Hpy188I TCNGA 4 cut(s) 385, 505, 616, 750
Hpy188III TCNNGA 9 cut(s) 23, 120, 287, 1141, 1257, 1330, 1478, 1497, 1561
Hpy8I GTNNAC 4 cut(s) 304, 465, 570, 1440
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 58, 865, 1108, 1219
HpyCH4III ACNGT 6 cut(s) 280, 442, 678, 824, 1087, 1150
HpyF10VI GCNNNNNNNGC 5 cut(s) 554, 714, 1199, 1208, 1370
HpyF3I CTNAG 8 cut(s) 729, 743, 765, 867, 1044, 1104, 1281, 1387
Hsp92II CATG 4 cut(s) 492, 695, 916, 1487
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 2 cut(s) 361, 1480
Kzo9I GATC 5 cut(s) 122, 318, 361, 1417, 1480
LmnI GCTCC 4 cut(s) 55, 385, 1350, 1361
Lsp1109I GCAGC 3 cut(s) 880, 1223, 1252
LweI GCATC 5 cut(s) 1015, 1202, 1238, 1502, 1537
MaeIII GTNAC 4 cut(s) 424, 737, 908, 934
MalI GATC 5 cut(s) 124, 320, 363, 1419, 1482
MboI GATC 5 cut(s) 122, 318, 361, 1417, 1480
MboII GAAGA 8 cut(s) 103, 132, 328, 372, 710, 1025, 1043, 1245
MluCI AATT 8 cut(s) 290, 400, 541, 660, 756, 844, 1029, 1095
MlyI GAGTC 2 cut(s) 1042, 1445
MmeI TCCRAC 3 cut(s) 252, 474, 1141
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 702, 1461
MseI TTAA 6 cut(s) 240, 651, 788, 1122, 1218, 1344
MslI CAYNNNNRTG 1 cut(s) 1220
MspCI CTTAAG 1 cut(s) 1343
MspI CCGG 3 cut(s) 197, 558, 1324
MspR9I CCNGG 4 cut(s) 197, 209, 1127, 1324
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 209, 1127
MvnI CGCG 2 cut(s) 263, 717
MwoI GCNNNNNNNGC 5 cut(s) 554, 714, 1199, 1208, 1370
NciI CCSGG 2 cut(s) 197, 1324
NdeII GATC 5 cut(s) 122, 318, 361, 1417, 1480
NlaIII CATG 4 cut(s) 492, 695, 916, 1487
NlaIV GGNNCC 5 cut(s) 30, 57, 111, 286, 1363
NmeAIII GCCGAG 1 cut(s) 1459
NmuCI GTSAC 2 cut(s) 424, 737
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 695
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 2 cut(s) 702, 1461
PfeI GAWTC 5 cut(s) 10, 174, 805, 1184, 1457
PkrI GCNGC 4 cut(s) 235, 895, 1213, 1267
PleI GAGTC 2 cut(s) 1042, 1444
PpsI GAGTC 2 cut(s) 1042, 1444
PpuMI RGGWCCY 1 cut(s) 284
PshAI GACNNNNGTC 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 207, 1125
PspEI GGTNACC 1 cut(s) 737
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 207, 1125
PspN4I GGNNCC 5 cut(s) 30, 57, 111, 286, 1363
PspPI GGNCC 3 cut(s) 110, 169, 284
PspPPI RGGWCCY 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 460
RsaI GTAC 3 cut(s) 247, 458, 1286
RsaNI GTAC 3 cut(s) 246, 457, 1285
RseI CAYNNNNRTG 1 cut(s) 1220
SaqAI TTAA 6 cut(s) 240, 651, 788, 1122, 1218, 1344
SatI GCNGC 4 cut(s) 234, 894, 1212, 1266
Sau3AI GATC 5 cut(s) 122, 318, 361, 1417, 1480
Sau96I GGNCC 3 cut(s) 110, 169, 284
SchI GAGTC 2 cut(s) 1042, 1445
ScrFI CCNGG 4 cut(s) 197, 209, 1127, 1324
SfaNI GCATC 5 cut(s) 1015, 1202, 1238, 1502, 1537
SfcI CTRYAG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 1220
SmlI CTYRAG 6 cut(s) 227, 329, 585, 967, 1328, 1343
SmoI CTYRAG 6 cut(s) 227, 329, 585, 967, 1328, 1343
Sse9I AATT 8 cut(s) 290, 400, 541, 660, 756, 844, 1029, 1095
SsiI CCGC 5 cut(s) 128, 233, 263, 715, 1202
StyD4I CCNGG 4 cut(s) 195, 207, 1125, 1322
TaaI ACNGT 6 cut(s) 280, 442, 678, 824, 1087, 1150
TaqI TCGA 5 cut(s) 8, 47, 62, 177, 1423
TaqII GACCGA 2 cut(s) 974, 1533
TasI AATT 8 cut(s) 290, 400, 541, 660, 756, 844, 1029, 1095
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 5 cut(s) 10, 174, 805, 1184, 1457
Tru1I TTAA 6 cut(s) 240, 651, 788, 1122, 1218, 1344
Tru9I TTAA 6 cut(s) 240, 651, 788, 1122, 1218, 1344
TscAI CASTG 4 cut(s) 283, 429, 472, 681
TseFI GTSAC 2 cut(s) 424, 737
TseI GCWGC 3 cut(s) 893, 1211, 1265
Tsp45I GTSAC 2 cut(s) 424, 737
TspDTI ATGAA 2 cut(s) 436, 581
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 4 cut(s) 283, 429, 472, 681
Vha464I CTTAAG 1 cut(s) 1343
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 4 cut(s) 541, 756, 844, 1095
XceI RCATGY 1 cut(s) 695
XmnI GAANNNNTTC 2 cut(s) 702, 1461
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.