Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005631.1

Orthogroup ID

OG0001999

Physical Location & Seq

Genomic Coordinates Reverse (-)

114152 .. 118523

Gene Structure 4372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005631.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ctgttcactggaagtgaaactacttctgcatggttggaggtgtctgaagtgaaaggagatgatgttgtttgtgtggtaaagaattctgcaacattggccggttctttgttcactttgcatatctctcaagttcatattgacttgcctactctctctgataaagataagcaggttatcagtagttggggacttcaaaacaaaattgatttcctctcactgtcatatacacgacatgcagaagatgttcgccaagcccgcgagttcctttctaagttgggtgacctcagtcagacacaaattttcgctaagattgaaaatatggagggattaacccattttgacgagattctacaagaagctgacggtattatcctatcccgtggaaatttgggcattgacctgccacctgagaaggtgtttttatttcaaaaggctgccctttacaagtgtaacatggctggaaagcctgctgtggttactcgtgttgtggatagtatgaccgacaacttgaggccaactcgtgcagaagcaactgatgttgcaaatgctgtattagacggaagtgatgcaattcttctcggtgctgagactcttcgtgggttataccctgttgataccatctctactgttggcaaaatttgtgctgaggcagagaaggtctttaaccaggacttgtatttcaagaggacagtcaaatatgttggagagccaatgacacacttggaatctattgcatcctctgcggttcgggcagccattaaggtgaaggcatctgttattatttgcttcacttcttcaggacgggctgcaagattgattgctaagtaccgacccacaatgccagttctttcagtcgtcatcccccggctcaagacaaatcagcttaagtggagctttactggagcctttgaggcaaggcaatcacttttagtcaggggtctttaccctatgcttgctgatcctcgacaccctgccgagtccaccagttcaacaaacgagtcagttctaaaggttgctcttgatcatggaaaggcatcaggagttgtaaagtcgcacgaccgagtagttgtttgccagaaagttggtgatgcctctgttgtcaagattattgagctcgaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004743 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

374

Amino Acids

40.82

Weight (kDa)

6.79

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36580 AT3G52990 AT3G52990
fragaria_vesca	FvH4_6g17480 FvH4_6g17480 FvH4_6g17480 FvH4_6g17480 FvH4_7g06490 FvH4_7g06490 FvH4_7g06490 FvH4_7g06490 FvH4_7g06490
malus_domestica	MD02G1244000.v1.1 MD07G1072900.v1.1 MD07G1073000.v1.1 MD12G1096900.v1.1 MD14G1094200.v1.1
prunus_persica	Prupe.2G091200_v2.0.a1 Prupe.2G091200_v2.0.a1 Prupe.2G091200_v2.0.a1 Prupe.7G120700_v2.0.a1 Prupe.7G120700_v2.0.a1
pyrus_communis	pycom07g05600 pycom07g05630 pycom12g09800 pycom14g09200
rosa_chinensis	RchiOBHm_Chr1g0334861 RchiOBHm_Chr3g0471721
rosa_laevigata	RLG00000024139 RLG00000029414
rosa_multiflora	Rmu_sc0000574.1_g000046 Rmu_sc0005631.1_g000026 Rmu_sc0026537.1_g000003
rosa_roxburghii	Rroxscaffold_4G00316390 Rroxscaffold_6G00409610
rosa_rugosa	Rorug01G0117400 Rorug03G0119000 Rorug03G0119100 Rorug03G0119200
rosa_samantha	Rh1CG133000 Rh3AG170600 Rh3BG196300 Rh3DG178700
rosa_wichuraiana	Rw0G009040 Rw1G011670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	160, 408
AccII	CGCG	1 cut(s)	258
AciI	CCGC	2 cut(s)	256, 743
AclWI	GGATC	1 cut(s)	953
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	4 cut(s)	82, 297, 385, 636
AcuI	CTGAAG	2 cut(s)	66, 780
AfaI	GTAC	1 cut(s)	827
AflII	CTTAAG	1 cut(s)	884
AgsI	TTSAA	5 cut(s)	194, 314, 428, 682, 990
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	4 cut(s)	359, 883, 894, 1114
AluI	AGCT	4 cut(s)	359, 883, 894, 1114
Alw21I	GWGCWC	1 cut(s)	1116
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	1 cut(s)	953
AoxI	GGCC	2 cut(s)	96, 512
ApeKI	GCWGC	3 cut(s)	434, 752, 806
ApoI	RAATTY	4 cut(s)	82, 297, 385, 636
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	3 cut(s)	290, 775, 1097
BanII	GRGCYC	1 cut(s)	1116
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	480, 519
Bbv12I	GWGCWC	1 cut(s)	1116
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	421, 764, 793
BccI	CCATC	1 cut(s)	626
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	884
BfuAI	ACCTGC	2 cut(s)	160, 408
BglI	GCCNNNNNGGC	1 cut(s)	911
BisI	GCNGC	3 cut(s)	435, 753, 807
BlsI	GCNGC	3 cut(s)	436, 754, 808
Bme1390I	CCNGG	2 cut(s)	668, 865
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	2 cut(s)	668, 865
BmsI	GCATC	5 cut(s)	556, 743, 779, 1043, 1078
BoxI	GACNNNNGTC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	111, 529, 854
BpuMI	CCSGG	1 cut(s)	865
BsaJI	CCNNGG	2 cut(s)	379, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	13, 842, 904, 984
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	2 cut(s)	379, 863
BseGI	GGATG	2 cut(s)	734, 858
BseMII	CTCAG	4 cut(s)	298, 399, 576, 636
BseNI	ACTGG	4 cut(s)	13, 842, 904, 984
BseXI	GCAGC	3 cut(s)	421, 764, 793
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	1060
BshFI	GGCC	2 cut(s)	98, 514
BsiEI	CGRYCG	1 cut(s)	1060
BsiHKAI	GWGCWC	1 cut(s)	1116
BsiSI	CCGG	2 cut(s)	99, 865
BslFI	GGGAC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	98, 514
Bsp1286I	GDGCHC	1 cut(s)	1116
Bsp143I	GATC	2 cut(s)	958, 1021
BspACI	CCGC	2 cut(s)	256, 743
BspANI	GGCC	2 cut(s)	98, 514
BspCNI	CTCAG	4 cut(s)	297, 400, 577, 637
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	904
BspMI	ACCTGC	2 cut(s)	160, 408
BspPI	GGATC	1 cut(s)	953
BspTI	CTTAAG	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	13, 842, 904, 984
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	379, 863
BssMI	GATC	2 cut(s)	958, 1021
BssSI	CACGAG	2 cut(s)	480, 519
Bst2BI	CACGAG	2 cut(s)	480, 519
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	219, 365, 628, 691
Bst6I	CTCTTC	1 cut(s)	597
BstAFI	CTTAAG	1 cut(s)	884
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	256, 468, 954
BstDEI	CTNAG	7 cut(s)	270, 284, 306, 408, 585, 645, 822
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	734, 858
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	961, 1024
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	2 cut(s)	958, 1021
BstMCI	CGRYCG	1 cut(s)	1060
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 255, 740, 749, 911
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	285
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	666, 863
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	421, 764, 793
BstXI	CCANNNNNNTGG	1 cut(s)	1082
BsuRI	GGCC	2 cut(s)	98, 514
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	734, 858
BtsIMutI	CAGTG	2 cut(s)	6, 215
BveI	ACCTGC	2 cut(s)	160, 408
Cac8I	GCNNGC	3 cut(s)	256, 468, 954
Cfr10I	RCCGGY	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	4 cut(s)	30, 233, 454, 1025
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	7 cut(s)	270, 284, 306, 408, 585, 645, 822
DpnI	GATC	2 cut(s)	960, 1023
DpnII	GATC	2 cut(s)	958, 1021
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	1114
Eco24I	GRGCYC	1 cut(s)	1116
Eco53kI	GAGCTC	1 cut(s)	1114
Eco57I	CTGAAG	2 cut(s)	66, 780
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	1114
EcoO65I	GGTNACC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	1116
FaeI	CATG	4 cut(s)	33, 236, 457, 1028
FalI	AAGNNNNNCTT	2 cut(s)	878, 910
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	4 cut(s)	29, 232, 453, 1024
FauI	CCCGC	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	3 cut(s)	435, 753, 807
FokI	GGATG	2 cut(s)	721, 845
FriOI	GRGCYC	1 cut(s)	1116
Fsp4HI	GCNGC	3 cut(s)	435, 753, 807
GluI	GCNGC	3 cut(s)	435, 753, 807
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	98, 514
HapII	CCGG	2 cut(s)	99, 865
Hin1II	CATG	4 cut(s)	33, 236, 457, 1028
HinfI	GANTC	5 cut(s)	346, 589, 725, 977, 998
HpaII	CCGG	2 cut(s)	99, 865
HphI	GGTGA	3 cut(s)	290, 775, 1097
Hpy166II	GTNNAC	3 cut(s)	6, 111, 981
Hpy188I	TCNGA	3 cut(s)	46, 157, 291
Hpy188III	TCNNGA	6 cut(s)	682, 798, 871, 1019, 1038, 1102
Hpy8I	GTNNAC	3 cut(s)	6, 111, 981
HpyAV	CCTTC	3 cut(s)	406, 649, 760
HpyCH4III	ACNGT	4 cut(s)	219, 365, 628, 691
HpyCH4V	TGCA	9 cut(s)	29, 89, 118, 236, 524, 542, 569, 734, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 255, 740, 749, 911
HpyF3I	CTNAG	7 cut(s)	270, 284, 306, 408, 585, 645, 822
Hsp92II	CATG	4 cut(s)	33, 236, 457, 1028
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	2 cut(s)	958, 1021
LmnI	GCTCC	2 cut(s)	891, 902
Lsp1109I	GCAGC	3 cut(s)	421, 764, 793
LweI	GCATC	5 cut(s)	556, 743, 779, 1043, 1078
MaeIII	GTNAC	3 cut(s)	278, 449, 475
MalI	GATC	2 cut(s)	960, 1023
MboI	GATC	2 cut(s)	958, 1021
MboII	GAAGA	4 cut(s)	251, 566, 584, 786
MhlI	GDGCHC	1 cut(s)	1116
MluCI	AATT	6 cut(s)	82, 201, 297, 385, 570, 636
MlyI	GAGTC	3 cut(s)	583, 986, 1007
MmeI	TCCRAC	2 cut(s)	15, 682
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	329, 663, 759, 885
MslI	CAYNNNNRTG	1 cut(s)	761
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	2 cut(s)	99, 865
MspR9I	CCNGG	2 cut(s)	668, 865
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	95, 255, 740, 749, 911
NciI	CCSGG	1 cut(s)	865
NdeII	GATC	2 cut(s)	958, 1021
NlaIII	CATG	4 cut(s)	33, 236, 457, 1028
NlaIV	GGNNCC	1 cut(s)	904
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	346, 725
PkrI	GCNGC	3 cut(s)	436, 754, 808
PleI	GAGTC	3 cut(s)	583, 985, 1006
PpsI	GAGTC	3 cut(s)	583, 985, 1006
PshAI	GACNNNNGTC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	1116
Psp6I	CCWGG	1 cut(s)	666
PspEI	GGTNACC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	904
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	1116
SaqAI	TTAA	4 cut(s)	329, 663, 759, 885
SatI	GCNGC	3 cut(s)	435, 753, 807
Sau3AI	GATC	2 cut(s)	958, 1021
SchI	GAGTC	3 cut(s)	583, 986, 1007
ScrFI	CCNGG	2 cut(s)	668, 865
SduI	GDGCHC	1 cut(s)	1116
SfaNI	GCATC	5 cut(s)	556, 743, 779, 1043, 1078
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	4 cut(s)	126, 508, 869, 884
SmoI	CTYRAG	4 cut(s)	126, 508, 869, 884
Sse9I	AATT	6 cut(s)	82, 201, 297, 385, 570, 636
SsiI	CCGC	2 cut(s)	256, 743
SstI	GAGCTC	1 cut(s)	1116
StyD4I	CCNGG	2 cut(s)	666, 863
TaaI	ACNGT	4 cut(s)	219, 365, 628, 691
TaqI	TCGA	2 cut(s)	964, 1116
TaqII	GACCGA	2 cut(s)	515, 1074
TasI	AATT	6 cut(s)	82, 201, 297, 385, 570, 636
TfiI	GAWTC	2 cut(s)	346, 725
Tru1I	TTAA	4 cut(s)	329, 663, 759, 885
Tru9I	TTAA	4 cut(s)	329, 663, 759, 885
TscAI	CASTG	2 cut(s)	13, 222
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	434, 752, 806
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	2 cut(s)	13, 222
Vha464I	CTTAAG	1 cut(s)	884
XapI	RAATTY	4 cut(s)	82, 297, 385, 636
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.