FvH4_6g29320

Pyrophosphate-energized vacuolar membrane proton

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
22610864 .. 22616069
5206 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29320.t1

Sequence Viewer

Length: 2004 bp
ATGGTTGTTTTTGCAGTCTTGATCTTCCTCTTCCTCGGATCTGTGAAGGGCTTCAGCACAGAGAGCCAGCCATGCACTTATGATGTGACAAGCACCTGCAAGCCAGCACTTGCCACTGCACTCTTCAGTACTGTTGCATTCTTACTTGGTGGTATCACCTCACTCCTGTCTGGTTTTCTTGGTATGAAAATCGCCACTTATGCCAATGCCAGGACAACATTGGAAGCAAGAAAAGGTGTGGGGAAGGCCTTTATCGTGGCCTTTAGGTCTGGTGCAGTCATGGGTTTTCTCCTTGCAGCCAATGGTCTTTTGGTACTTTACATTACCATCAATCTCTTTCAGCTGTACTATGGTGATGACTGGGAAGGCCTTTTTGAGGCAATTACTGGCTATGGTCTTGGTGGATCAGCAATGGCTCTTTTTGGGAGAGTAGGTGGTGGTATCTATACCAAGGCTGCTGATGTCGGTGCTGACCTTGTTGGAAAAATTGAAAGAAACATTCCTGAAGATGACCCGAGAAACCCAGCTGTGATTGCTGACAATGTTGGTGATAATGTTGGGGATATTGCTGGTATGGGATCTGATCTTTTTGGCTCCTATGCTGAATCATCTTGTGCTGCGCTAGTTGTTGCTTCCATTTCCTCATTTGGAATCAACCATGAGTTCACTGCCATGCTGTATCCCCTTCTTGTCAGTTCTATGGGCATTCTTATTTGTTTAATCACAACCTTGTTTGCCACTGATTTCTTTGAGATCAAGGCTGTCAAGGACATTGAACCAGCTTTGAAAAATCAGCTTATTATCTCCACTGTTCTTATGACTATTGGAATTGCAATTGTTAGCTGGGTTGCTCTGCCATCATCTTTCACAATTTACAACTTTGGAGTTCAGAAAGTTGTAAAGAACTGGCAATTGTTCTTGTGTGTATCTGTTGGTCTTTGGGCCGGACTTATCATTGGATTTGTCACTGAGTATTATACTAGCAATGCATATAGCCCTGTGCAAGATGTTGCTGATTCCTGTAGGACTGGTGCTGCCACCAATGTTATCTTTGGGCTTGCTCTGGGATACAAATCAGTCATCATTCCAATTTTCGCCATCGCAGTCAGCATTTTTGTTAGTTTTAGTTTCGCTGCTATGTATGGCATTGCAGTGGCTGCTCTTGGGATGCTGAGCACCATCGCTACAGGGTTGGCAATTGATGCCTACGGGCCCATCAGTGACAATGCTGGAGGCATTGCTGAGATGGCTGGCATGAGCCATCGTATTCGTGAGAGAACCGATGCTCTTGATGCCGCTGGGAATACCACTGCTGCAATTGGAAAGGGATTTGCTATTGGATCTGCTGCTCTAGTTTCTTTGGCTCTATTTGGTGCCTTTGTCAGTCGTGCAGCGATTTCAACAGTTGATGTCCTAACCCCAAAGGTCTTTATCGGACTGATCGTGGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACCATGAAGAGTGTGGGAAGTGCAGCTTTGAAAATGGTTGAGGAAGTTCGCAGGCAGTTCAATACCATCCCAGGACTCATGGAGGGTCTTGCCAAGCCCGACTATGCTACCTGTGTCAAGATCTCCACTGATGCATCCATCAAGGAGATGATTCCACCTGGTGCCCTTGTCATCCTTACACCTCTCATTGTCGGAACATTGTTCGGTGTGGAGACCCTCTCTGGTGTCCTTGCTGGTTCCCTTGTTTCTGGTGTGCAGGTAGCAATATCTGCCTCTAACACTGGTGGTGCATGGGACAATGCCAAGAAGTACATTGAGGCTGGTGCTTCGGAGCATGCAAGGACTCTTGGCCCAAAGGGGTCTGACCCCCACAAGGCTGCAGTCATCGGTGACACCATTGGAGATCCACTGAAGGACACTTCAGGCCCATCACTCAACATCCTCATTAAGCTCATGGCTGTTGAGTCCCTTGTGTTTGCTCCCTTCTTTGCCACTCATGGTGGCCTGCTCTTTAAGATCTTTTAA

Protein Analysis

668

Amino Acids

69.58

Weight (kDa)

5.42

Isoelectric Point (pI)

20.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 3 - 652 6.9e-245 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 104, 1726
AccB1I GGYRCC 2 cut(s) 1373, 1640
AciI CCGC 1 cut(s) 1296
AclWI GGATC 5 cut(s) 46, 412, 586, 1348, 1877
AcuI CTGAAG 5 cut(s) 37, 109, 525, 1884, 1910
AdeI CACNNNGTG 1 cut(s) 1640
AfaI GTAC 4 cut(s) 130, 315, 347, 1790
AfiI CCNNNNNNNGG 3 cut(s) 210, 376, 1852
AgsI TTSAA 6 cut(s) 491, 776, 787, 1401, 1510, 1540
AjnI CCWGG 3 cut(s) 209, 1549, 1636
AluBI AGCT 7 cut(s) 343, 527, 782, 796, 843, 1505, 1930
AluI AGCT 7 cut(s) 343, 527, 782, 796, 843, 1505, 1930
Alw21I GWGCWC 1 cut(s) 1178
Alw26I GTCTC 1 cut(s) 1685
AlwI GGATC 5 cut(s) 46, 412, 586, 1348, 1877
AlwNI CAGNNNCTG 1 cut(s) 1157
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 8 cut(s) 246, 258, 367, 942, 1211, 1828, 1903, 1981
ApaI GGGCCC 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 5 cut(s) 942, 1211, 1212, 1829, 1904
AsuHPI GGTGA 4 cut(s) 148, 365, 560, 1880
AvaI CYCGRG 1 cut(s) 514
BaeGI GKGCMC 2 cut(s) 1215, 1645
BanI GGYRCC 2 cut(s) 1373, 1640
BanII GRGCYC 1 cut(s) 1215
Bbv12I GWGCWC 1 cut(s) 1178
BciT130I CCWGG 3 cut(s) 211, 1551, 1638
BciVI GTATCC 2 cut(s) 690, 1061
BcoDI GTCTC 1 cut(s) 1685
BfaI CTAG 3 cut(s) 623, 981, 1352
BfmI CTRYAG 3 cut(s) 1021, 1185, 1857
BfuAI ACCTGC 2 cut(s) 104, 1726
BfuI GTATCC 2 cut(s) 690, 1061
BglII AGATCT 2 cut(s) 1599, 1995
BlpI GCTNAGC 1 cut(s) 1172
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 211, 1551, 1638
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 5 cut(s) 942, 1211, 1212, 1829, 1904
BmiI GGNNCC 5 cut(s) 595, 1213, 1375, 1642, 1717
BmrFI CCNGG 3 cut(s) 211, 1551, 1638
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 6 cut(s) 1158, 1192, 1273, 1282, 1600, 1622
BmuI ACTGGG 1 cut(s) 370
BplI GAGNNNNNCTC 2 cut(s) 1682, 1714
BpmI CTGGAG 1 cut(s) 1251
Bpu1102I GCTNAGC 1 cut(s) 1172
BsaBI GATNNNNATC 1 cut(s) 1072
BsaI GGTCTC 1 cut(s) 1685
BsaJI CCNNGG 3 cut(s) 34, 450, 1549
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 376, 1852
Bse1I ACTGG 6 cut(s) 365, 391, 911, 1033, 1469, 1765
Bse3DI GCAATG 5 cut(s) 417, 991, 1146, 1236, 1458
Bse8I GATNNNNATC 1 cut(s) 1072
BseBI CCWGG 3 cut(s) 211, 1551, 1638
BseDI CCNNGG 3 cut(s) 34, 450, 1549
BseGI GGATG 5 cut(s) 1173, 1545, 1613, 1650, 1917
BseJI GATNNNNATC 1 cut(s) 1072
BseLI CCNNNNNNNGG 3 cut(s) 210, 376, 1852
BseMI GCAATG 5 cut(s) 417, 991, 1146, 1236, 1458
BseMII CTCAG 3 cut(s) 960, 1163, 1233
BseNI ACTGG 6 cut(s) 365, 391, 911, 1033, 1469, 1765
BseSI GKGCMC 2 cut(s) 1215, 1645
BseYI CCCAGC 3 cut(s) 523, 843, 1298
BsgI GTGCAG 5 cut(s) 102, 294, 1410, 1521, 1754
BshFI GGCC 8 cut(s) 248, 260, 369, 944, 1213, 1830, 1905, 1983
BshNI GGYRCC 2 cut(s) 1373, 1640
BsiHKAI GWGCWC 1 cut(s) 1178
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 945
BslFI GGGAC 2 cut(s) 1787, 1930
BslI CCNNNNNNNGG 3 cut(s) 210, 376, 1852
BsmAI GTCTC 1 cut(s) 1685
BsmFI GGGAC 2 cut(s) 1787, 1930
BsmI GAATGC 2 cut(s) 137, 705
BsnI GGCC 8 cut(s) 248, 260, 369, 944, 1213, 1830, 1905, 1983
Bso31I GGTCTC 1 cut(s) 1685
BsoBI CYCGRG 1 cut(s) 514
Bsp120I GGGCCC 1 cut(s) 1211
Bsp1286I GDGCHC 3 cut(s) 1178, 1215, 1645
Bsp1720I GCTNAGC 1 cut(s) 1172
BspACI CCGC 1 cut(s) 1296
BspANI GGCC 8 cut(s) 248, 260, 369, 944, 1213, 1830, 1905, 1983
BspCNI CTCAG 3 cut(s) 961, 1164, 1234
BspLI GGNNCC 5 cut(s) 595, 1213, 1375, 1642, 1717
BspMAI CTGCAG 1 cut(s) 1861
BspMI ACCTGC 2 cut(s) 104, 1726
BspPI GGATC 5 cut(s) 46, 412, 586, 1348, 1877
BspT107I GGYRCC 2 cut(s) 1373, 1640
BspTNI GGTCTC 1 cut(s) 1685
BsrDI GCAATG 5 cut(s) 417, 991, 1146, 1236, 1458
BsrI ACTGG 6 cut(s) 365, 391, 911, 1033, 1469, 1765
BssECI CCNNGG 3 cut(s) 34, 450, 1549
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 211, 1551, 1638
Bst4CI ACNGT 3 cut(s) 133, 811, 1405
Bst6I CTCTTC 3 cut(s) 35, 128, 1481
BstAPI GCANNNNNTGC 3 cut(s) 1157, 1202, 1748
BstC8I GCNNGC 8 cut(s) 68, 101, 105, 1059, 1252, 1532, 1815, 1985
BstDEI CTNAG 3 cut(s) 969, 1172, 1242
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 5 cut(s) 1173, 1545, 1613, 1650, 1917
BstHHI GCGC 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 1685
BstMWI GCNNNNNNNGC 9 cut(s) 63, 72, 200, 533, 1157, 1202, 1247, 1292, 1748
BstNI CCWGG 3 cut(s) 211, 1551, 1638
BstNSI RCATGY 1 cut(s) 1817
BstSCI CCNGG 3 cut(s) 209, 1549, 1636
BstSFI CTRYAG 3 cut(s) 1021, 1185, 1857
BstSLI GKGCMC 2 cut(s) 1215, 1645
BstX2I RGATCY 6 cut(s) 38, 578, 1340, 1599, 1882, 1995
BstYI RGATCY 6 cut(s) 38, 578, 1340, 1599, 1882, 1995
BsuI GTATCC 2 cut(s) 690, 1061
BsuRI GGCC 8 cut(s) 248, 260, 369, 944, 1213, 1830, 1905, 1983
BtgZI GCGATG 2 cut(s) 1084, 1165
BtsCI GGATG 5 cut(s) 1173, 1545, 1613, 1650, 1917
BtsI GCAGTG 4 cut(s) 114, 666, 1158, 1308
BveI ACCTGC 2 cut(s) 104, 1726
Cac8I GCNNGC 8 cut(s) 68, 101, 105, 1059, 1252, 1532, 1815, 1985
CaiI CAGNNNCTG 1 cut(s) 1157
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 5 cut(s) 942, 1211, 1212, 1829, 1904
CsiI ACCWGGT 1 cut(s) 1636
Csp6I GTAC 4 cut(s) 129, 314, 346, 1789
CviQI GTAC 4 cut(s) 129, 314, 346, 1789
DdeI CTNAG 3 cut(s) 969, 1172, 1242
DraIII CACNNNGTG 1 cut(s) 1640
Eam1104I CTCTTC 3 cut(s) 35, 128, 1481
EarI CTCTTC 3 cut(s) 35, 128, 1481
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 2 cut(s) 248, 369
Eco24I GRGCYC 1 cut(s) 1215
Eco31I GGTCTC 1 cut(s) 1685
Eco57I CTGAAG 5 cut(s) 37, 109, 525, 1884, 1910
Eco88I CYCGRG 1 cut(s) 514
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 209, 1549, 1636
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 2 cut(s) 991, 1615
EcoT38I GRGCYC 1 cut(s) 1215
ErhI CCWWGG 1 cut(s) 450
FalI AAGNNNNNCTT 2 cut(s) 1489, 1521
FaqI GGGAC 2 cut(s) 1787, 1930
FokI GGATG 5 cut(s) 1180, 1532, 1600, 1637, 1904
FriOI GRGCYC 1 cut(s) 1215
FspBI CTAG 3 cut(s) 623, 981, 1352
GlaI GCGC 1 cut(s) 621
GsaI CCCAGC 3 cut(s) 527, 847, 1302
GsuI CTGGAG 1 cut(s) 1251
HaeIII GGCC 8 cut(s) 248, 260, 369, 944, 1213, 1830, 1905, 1983
HapII CCGG 1 cut(s) 945
HhaI GCGC 1 cut(s) 622
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HinfI GANTC 7 cut(s) 605, 651, 1016, 1554, 1630, 1822, 1943
HpaII CCGG 1 cut(s) 945
HphI GGTGA 4 cut(s) 148, 365, 560, 1880
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 7 cut(s) 38, 583, 891, 1436, 1673, 1810, 1843
Hpy188III TCNNGA 5 cut(s) 19, 503, 1271, 1289, 1597
Hpy8I GTNNAC 1 cut(s) 666
HpyAV CCTTC 6 cut(s) 40, 238, 359, 695, 1885, 1972
HpyCH4III ACNGT 3 cut(s) 133, 811, 1405
HpyF10VI GCNNNNNNNGC 9 cut(s) 63, 72, 200, 533, 1157, 1202, 1247, 1292, 1748
HpyF3I CTNAG 3 cut(s) 969, 1172, 1242
HspAI GCGC 1 cut(s) 620
LmnI GCTCC 3 cut(s) 599, 1810, 1963
LweI GCATC 6 cut(s) 1158, 1192, 1273, 1282, 1600, 1622
MabI ACCWGGT 1 cut(s) 1636
MaeI CTAG 3 cut(s) 623, 981, 1352
MaeIII GTNAC 4 cut(s) 85, 964, 1220, 1868
MboII GAAGA 5 cut(s) 16, 22, 115, 518, 1498
MfeI CAATTG 4 cut(s) 834, 911, 1197, 1317
MflI RGATCY 6 cut(s) 38, 578, 1340, 1599, 1882, 1995
MhlI GDGCHC 3 cut(s) 1178, 1215, 1645
MluCI AATT 9 cut(s) 381, 486, 828, 834, 870, 911, 1089, 1197, 1317
MlyI GAGTC 3 cut(s) 1548, 1816, 1952
MmeI TCCRAC 2 cut(s) 460, 1651
Mph1103I ATGCAT 2 cut(s) 991, 1615
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 719, 1926, 1992, 2002
MslI CAYNNNNRTG 3 cut(s) 671, 1151, 1481
MspA1I CMGCKG 3 cut(s) 343, 527, 1298
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 3 cut(s) 211, 1551, 1638
MunI CAATTG 4 cut(s) 834, 911, 1197, 1317
Mva1269I GAATGC 2 cut(s) 137, 705
MvaI CCWGG 3 cut(s) 211, 1551, 1638
MwoI GCNNNNNNNGC 9 cut(s) 63, 72, 200, 533, 1157, 1202, 1247, 1292, 1748
NlaIV GGNNCC 5 cut(s) 595, 1213, 1375, 1642, 1717
NmuCI GTSAC 4 cut(s) 85, 964, 1220, 1868
NsiI ATGCAT 2 cut(s) 991, 1615
NspI RCATGY 1 cut(s) 1817
PaeI GCATGC 1 cut(s) 1817
PaqCI CACCTGC 1 cut(s) 104
PceI AGGCCT 2 cut(s) 248, 369
PcsI WCGNNNNNNNCGW 1 cut(s) 1440
PctI GAATGC 2 cut(s) 137, 705
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 605, 651, 1016, 1630
PleI GAGTC 3 cut(s) 1548, 1816, 1951
PpsI GAGTC 3 cut(s) 1548, 1816, 1951
Psp6I CCWGG 3 cut(s) 209, 1549, 1636
PspFI CCCAGC 3 cut(s) 523, 843, 1298
PspGI CCWGG 3 cut(s) 209, 1549, 1636
PspN4I GGNNCC 5 cut(s) 595, 1213, 1375, 1642, 1717
PspOMI GGGCCC 1 cut(s) 1211
PspPI GGNCC 5 cut(s) 942, 1211, 1212, 1829, 1904
PstI CTGCAG 1 cut(s) 1861
PstNI CAGNNNCTG 1 cut(s) 1157
PsuI RGATCY 6 cut(s) 38, 578, 1340, 1599, 1882, 1995
PvuII CAGCTG 2 cut(s) 343, 527
RsaI GTAC 4 cut(s) 130, 315, 347, 1790
RsaNI GTAC 4 cut(s) 129, 314, 346, 1789
RseI CAYNNNNRTG 3 cut(s) 671, 1151, 1481
SaqAI TTAA 4 cut(s) 719, 1926, 1992, 2002
Sau96I GGNCC 5 cut(s) 942, 1211, 1212, 1829, 1904
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 3 cut(s) 1548, 1816, 1952
ScrFI CCNGG 3 cut(s) 211, 1551, 1638
SduI GDGCHC 3 cut(s) 1178, 1215, 1645
SexAI ACCWGGT 1 cut(s) 1636
SfaNI GCATC 6 cut(s) 1158, 1192, 1273, 1282, 1600, 1622
SfcI CTRYAG 3 cut(s) 1021, 1185, 1857
SmiMI CAYNNNNRTG 3 cut(s) 671, 1151, 1481
SphI GCATGC 1 cut(s) 1817
Sse9I AATT 9 cut(s) 381, 486, 828, 834, 870, 911, 1089, 1197, 1317
SseBI AGGCCT 2 cut(s) 248, 369
SsiI CCGC 1 cut(s) 1296
SspMI CTAG 3 cut(s) 623, 981, 1352
StuI AGGCCT 2 cut(s) 248, 369
StyD4I CCNGG 3 cut(s) 209, 1549, 1636
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 133, 811, 1405
TasI AATT 9 cut(s) 381, 486, 828, 834, 870, 911, 1089, 1197, 1317
TatI WGTACW 3 cut(s) 128, 345, 1788
TauI GCSGC 1 cut(s) 1298
TfiI GAWTC 4 cut(s) 605, 651, 1016, 1630
Tru1I TTAA 4 cut(s) 719, 1926, 1992, 2002
Tru9I TTAA 4 cut(s) 719, 1926, 1992, 2002
TseFI GTSAC 4 cut(s) 85, 964, 1220, 1868
Tsp45I GTSAC 4 cut(s) 85, 964, 1220, 1868
TspDTI ATGAA 2 cut(s) 200, 1499
XagI CCTNNNNNAGG 1 cut(s) 374
XceI RCATGY 1 cut(s) 1817
XcmI CCANNNNNNNNNTGG 3 cut(s) 217, 307, 1489
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 3 cut(s) 623, 981, 1352
ZrmI AGTACT 1 cut(s) 130
Zsp2I ATGCAT 2 cut(s) 991, 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.