Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Forward (+)

56112362 .. 56114463

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGGTGCTGCTCTCGTACCTTGCCACGGAGATTGTGATCCCGGTGTGCGCCGTGGTCGGGATCTTGTTCTCGCTCGCGCAGTGGTACTTGGTGTCGCGCGTGAGGGTCACGCCCGACCGCAACGCGCCGGCGGCGGGAACCAACACCAAGAAGAACGGCTTCAACGACTACCTCATTGAGGAGGAGGAAGGCGTCAACGACCAAACCGTCGTCGCTAAGTGCGCCGAGATTCAGAATGCTATCTCCGAAGGTGCAACATCCTTCCTTTTCACCGAATATCAGTATGTCGGGGTCTTCATGGTTGTTTTTGCGGTCTTGATCTTCCTCTTCCTCGGGTCCGTGAAGGGCTTCAGCACAGAGAGCCAGCCGTGCACTTATGATGTGACAAACACCTGCAAGCCAGCACTTGCTACTGCAGTCTTCAGCACTGTTGCTTTCTTACTTGGTGGTATCACCTCACTTCTCTCTGGTTTTCTTGGGATGAAAATCGCCACTTATGCCAATGCCAGGACAACATTGGAAGCAAGAAAAGGTGTGGGGAAGGCCTTTATCGTGGCCTTTCGGTCTGGCGCAGTCATGGGTTTTCTCCTTGCAGCCAATGGTCTTTTGGTCCTTTACATTACCATCAATCTCTTTCAGCTGTACTATGGTGATGACTGGGAAGGCCTTTTCGAGGCAATTACTGGCTATGGTCTTGGTGGATCAGCAATGGCTCTTTTCGGGAGAGTAGGTGGTGGTATCTATACCAAGGCTGCTGATGTTGGTGCCGACCTTGTTGGAAAAATTGAAAGAAACATTCCTGAAGATGATCCAAGAAACCCAGCTGTAAGTATTATTGATTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

283

Amino Acids

30.24

Weight (kDa)

4.8

Isoelectric Point (pI)

25.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	70 - 277	3.3e-63	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	767
AccII	CGCG	4 cut(s)	80, 100, 102, 128
AciI	CCGC	5 cut(s)	5, 121, 134, 137, 314
AclWI	GGATC	4 cut(s)	34, 71, 712, 806
AcuI	CTGAAG	3 cut(s)	337, 409, 825
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	3 cut(s)	20, 89, 647
AfiI	CCNNNNNNNGG	6 cut(s)	28, 60, 137, 181, 510, 676
AgsI	TTSAA	2 cut(s)	166, 791
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	2 cut(s)	643, 827
AluI	AGCT	2 cut(s)	643, 827
Alw21I	GWGCWC	1 cut(s)	377
Alw44I	GTGCAC	1 cut(s)	373
AlwI	GGATC	4 cut(s)	34, 71, 712, 806
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	546, 558, 667
ApaLI	GTGCAC	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	10, 596, 755
Asp700I	GAANNNNTTC	2 cut(s)	161, 350
AspLEI	GCGC	6 cut(s)	53, 82, 102, 130, 227, 575
AspS9I	GGNCC	2 cut(s)	339, 613
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	265, 448, 665
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	339, 613
BaeGI	GKGCMC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	767
BbsI	GAAGAC	2 cut(s)	289, 415
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	608, 742
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	3 cut(s)	38, 175, 355
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	4 cut(s)	11, 135, 597, 756
BlsI	GCNGC	4 cut(s)	12, 136, 598, 757
Bme1390I	CCNGG	2 cut(s)	44, 511
Bme18I	GGWCC	2 cut(s)	339, 613
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	339, 613
BmiI	GGNNCC	3 cut(s)	142, 340, 769
BmrFI	CCNGG	2 cut(s)	44, 511
BmrI	ACTGGG	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	670
BpiI	GAAGAC	2 cut(s)	289, 415
BpuMI	CCSGG	1 cut(s)	44
BsaBI	GATNNNNATC	2 cut(s)	38, 488
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	27, 54, 334, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 60, 137, 181, 510, 676
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	665, 691
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	2 cut(s)	38, 488
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	4 cut(s)	27, 54, 334, 750
BseGI	GGATG	2 cut(s)	260, 489
BseJI	GATNNNNATC	2 cut(s)	38, 488
BseLI	CCNNNNNNNGG	6 cut(s)	28, 60, 137, 181, 510, 676
BseMI	GCAATG	1 cut(s)	717
BseNI	ACTGG	2 cut(s)	665, 691
BseRI	GAGGAG	2 cut(s)	197, 200
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	608, 742
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	4 cut(s)	80, 100, 102, 128
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	548, 560, 669
BshNI	GGYRCC	1 cut(s)	767
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	44, 131
BslI	CCNNNNNNNGG	6 cut(s)	28, 60, 137, 181, 510, 676
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	548, 560, 669
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	39, 63, 321, 704, 811
BspACI	CCGC	5 cut(s)	5, 121, 134, 137, 314
BspANI	GGCC	3 cut(s)	548, 560, 669
BspFNI	CGCG	4 cut(s)	80, 100, 102, 128
BspLI	GGNNCC	3 cut(s)	142, 340, 769
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	4 cut(s)	34, 71, 712, 806
BspT107I	GGYRCC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	665, 691
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	4 cut(s)	27, 54, 334, 750
BssMI	GATC	5 cut(s)	39, 63, 321, 704, 811
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	211, 433
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	5 cut(s)	78, 132, 368, 401, 405
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	2 cut(s)	27, 54
BstENI	CCTNNNNNAGG	2 cut(s)	179, 674
BstF5I	GGATG	2 cut(s)	260, 489
BstFNI	CGCG	4 cut(s)	80, 100, 102, 128
BstHHI	GCGC	6 cut(s)	53, 82, 102, 130, 227, 575
BstKTI	GATC	5 cut(s)	42, 66, 324, 707, 814
BstMBI	GATC	5 cut(s)	39, 63, 321, 704, 811
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 224, 363, 372, 500
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	42, 509
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	4 cut(s)	80, 100, 102, 128
BstV1I	GCAGC	2 cut(s)	608, 742
BstV2I	GAAGAC	2 cut(s)	289, 415
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	548, 560, 669
BtgI	CCRYGG	2 cut(s)	27, 54
BtsCI	GGATG	2 cut(s)	260, 489
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	89, 429
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	5 cut(s)	78, 132, 368, 401, 405
CfoI	GCGC	6 cut(s)	53, 82, 102, 130, 227, 575
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	339, 613
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	19, 88, 646
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	2 cut(s)	301, 580
CviQI	GTAC	3 cut(s)	19, 88, 646
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	5 cut(s)	41, 65, 323, 706, 813
DpnII	GATC	5 cut(s)	39, 63, 321, 704, 811
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	2 cut(s)	548, 669
Eco47I	GGWCC	2 cut(s)	339, 613
Eco57I	CTGAAG	3 cut(s)	337, 409, 825
Eco88I	CYCGRG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	2 cut(s)	179, 674
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	2 cut(s)	304, 583
FaiI	YATR	8 cut(s)	288, 302, 381, 501, 581, 651, 693, 747
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	2 cut(s)	300, 579
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	11, 135, 597, 756
FokI	GGATG	2 cut(s)	247, 496
Fsp4HI	GCNGC	4 cut(s)	11, 135, 597, 756
GlaI	GCGC	6 cut(s)	52, 81, 101, 129, 226, 574
GluI	GCNGC	4 cut(s)	11, 135, 597, 756
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	3 cut(s)	548, 560, 669
HapII	CCGG	2 cut(s)	44, 131
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	6 cut(s)	53, 82, 102, 130, 227, 575
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	304, 583
Hin6I	GCGC	6 cut(s)	51, 80, 100, 128, 225, 573
HinP1I	GCGC	6 cut(s)	51, 80, 100, 128, 225, 573
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	44, 131
HphI	GGTGA	3 cut(s)	265, 448, 665
Hpy166II	GTNNAC	2 cut(s)	199, 375
Hpy188I	TCNGA	2 cut(s)	237, 250
Hpy188III	TCNNGA	4 cut(s)	61, 319, 724, 803
Hpy8I	GTNNAC	2 cut(s)	199, 375
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	6 cut(s)	185, 245, 274, 340, 538, 659
HpyCH4III	ACNGT	2 cut(s)	211, 433
HpyCH4V	TGCA	5 cut(s)	257, 375, 399, 419, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 224, 363, 372, 500
HpyF3I	CTNAG	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	304, 583
HspAI	GCGC	6 cut(s)	51, 80, 100, 128, 225, 573
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	39, 63, 321, 704, 811
Lsp1109I	GCAGC	2 cut(s)	608, 742
MaeIII	GTNAC	2 cut(s)	109, 385
MalI	GATC	5 cut(s)	41, 65, 323, 706, 813
MboI	GATC	5 cut(s)	39, 63, 321, 704, 811
MboII	GAAGA	6 cut(s)	166, 289, 316, 322, 415, 818
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	681, 786
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	9 cut(s)	99, 175, 178, 181, 185, 338, 344, 469, 670
MreI	CGCCGGCG	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	161, 350
MseI	TTAA	1 cut(s)	850
MspA1I	CMGCKG	2 cut(s)	643, 827
MspI	CCGG	2 cut(s)	44, 131
MspR9I	CCNGG	2 cut(s)	44, 511
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	4 cut(s)	80, 100, 102, 128
MwoI	GCNNNNNNNGC	5 cut(s)	134, 224, 363, 372, 500
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	5 cut(s)	39, 63, 321, 704, 811
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	304, 583
NlaIV	GGNNCC	3 cut(s)	142, 340, 769
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	109, 385
PaqCI	CACCTGC	1 cut(s)	404
PceI	AGGCCT	2 cut(s)	548, 669
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 207
PctI	GAATGC	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	2 cut(s)	161, 350
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	12, 136, 598, 757
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	142, 340, 769
PspPI	GGNCC	2 cut(s)	339, 613
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	2 cut(s)	643, 827
RsaI	GTAC	3 cut(s)	20, 89, 647
RsaNI	GTAC	3 cut(s)	19, 88, 646
SaqAI	TTAA	1 cut(s)	850
SatI	GCNGC	4 cut(s)	11, 135, 597, 756
Sau3AI	GATC	5 cut(s)	39, 63, 321, 704, 811
Sau96I	GGNCC	2 cut(s)	339, 613
ScrFI	CCNGG	2 cut(s)	44, 511
SduI	GDGCHC	1 cut(s)	377
SfcI	CTRYAG	1 cut(s)	417
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	2 cut(s)	339, 613
Sse9I	AATT	2 cut(s)	681, 786
SseBI	AGGCCT	2 cut(s)	548, 669
SsiI	CCGC	5 cut(s)	5, 121, 134, 137, 314
StuI	AGGCCT	2 cut(s)	548, 669
StyD4I	CCNGG	2 cut(s)	42, 509
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	211, 433
TaqI	TCGA	1 cut(s)	675
TaqII	GACCGA	1 cut(s)	555
TasI	AATT	2 cut(s)	681, 786
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	850
Tru9I	TTAA	1 cut(s)	850
TscAI	CASTG	2 cut(s)	89, 436
TseFI	GTSAC	2 cut(s)	109, 385
TseI	GCWGC	3 cut(s)	10, 596, 755
Tsp45I	GTSAC	2 cut(s)	109, 385
TspDTI	ATGAA	2 cut(s)	289, 500
TspGWI	ACGGA	2 cut(s)	44, 331
TspRI	CASTG	2 cut(s)	89, 436
VneI	GTGCAC	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	339, 613
XagI	CCTNNNNNAGG	2 cut(s)	179, 674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	517, 607
XmnI	GAANNNNTTC	2 cut(s)	161, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.