Rh2AG375100

Pyrophosphate-energized vacuolar membrane proton

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
56114571 .. 56114909
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG375100.1

Sequence Viewer

Length: 339 bp
ATGGGATCCGATCTTTTTGGCTCATATGCTGAATCATCTTGTGCTGCTCTAGTTGTTGCTTCCATTTCCTCATTTGGAATCAACCATGAGTTCACCGCTATGCTGTATCCCCTCCTCGTCAGTTCTATGGGCATTCTTGTTTGTTTAATCACAACCTTGTTTGCCACTGATTTCTTTGAGATCAAGGCGGTCAAGGACATTGAACCAGCTTTGAAAAAGCAGCTTATCATCTCCACTGTTCTTATGACTATTGGAATTGCAATTGTAAGCTGGGTTGCTCTGCCATCATCCTTCACAATTTACAATTTTGGAGTTCAGAAAGTTGTAAAGAACTGGTAA

Protein Analysis

112

Amino Acids

12.15

Weight (kDa)

5.62

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
H_PPase PF03030 1 - 96 7.4e-13 Inorganic H+ pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 96, 188
AclWI GGATC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 203, 214
AluBI AGCT 3 cut(s) 209, 223, 270
AluI AGCT 3 cut(s) 209, 223, 270
AlwI GGATC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 44, 220
AsuHPI GGTGA 1 cut(s) 85
BamHI GGATCC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 31, 232
BccI CCATC 1 cut(s) 292
BciVI GTATCC 1 cut(s) 117
BfaI CTAG 1 cut(s) 50
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 2 cut(s) 45, 221
BlsI GCNGC 2 cut(s) 46, 222
BmiI GGNNCC 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 31, 232
BseYI CCCAGC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 5, 10, 180
BspACI CCGC 2 cut(s) 96, 188
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 338
BssMI GATC 3 cut(s) 5, 10, 180
Bst4CI ACNGT 1 cut(s) 238
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 3 cut(s) 8, 13, 183
BstMBI GATC 3 cut(s) 5, 10, 180
BstV1I GCAGC 2 cut(s) 31, 232
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 165, 234
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 21, 209, 223, 270
CviKI_1 RGCY 4 cut(s) 21, 209, 223, 270
DpnI GATC 3 cut(s) 7, 12, 182
DpnII GATC 3 cut(s) 5, 10, 180
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 25, 27, 87, 101, 128, 245
FatI CATG 1 cut(s) 85
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 45, 221
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 2 cut(s) 45, 221
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 45, 221
GsaI CCCAGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 89
HinfI GANTC 2 cut(s) 32, 78
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 10, 318
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 260
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 3 cut(s) 5, 10, 180
LpnPI CCDG 3 cut(s) 219, 256, 319
Lsp1109I GCAGC 2 cut(s) 31, 232
MaeI CTAG 1 cut(s) 50
MalI GATC 3 cut(s) 7, 12, 182
MboI GATC 3 cut(s) 5, 10, 180
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 5
MluCI AATT 4 cut(s) 255, 261, 297, 304
MnlI CCTC 3 cut(s) 79, 122, 125
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 98
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 132
NdeI CATATG 1 cut(s) 25
NdeII GATC 3 cut(s) 5, 10, 180
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 7
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 32, 78
PkrI GCNGC 2 cut(s) 46, 222
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 45, 221
Sau3AI GATC 3 cut(s) 5, 10, 180
SetI ASST 4 cut(s) 158, 211, 225, 272
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 4 cut(s) 255, 261, 297, 304
SsiI CCGC 2 cut(s) 96, 188
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 238
TasI AATT 4 cut(s) 255, 261, 297, 304
TfiI GAWTC 2 cut(s) 32, 78
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 172, 241
TseI GCWGC 2 cut(s) 44, 220
TspRI CASTG 2 cut(s) 172, 241
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.