Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042014.1

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Forward (+)

168 .. 476

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgggggcaactattctcccagatctcggggcggagattctgattccgttctgcgcggtggtcggaatcgtgttctcgctgctccagtgggtgtacgtgtcacgcgtccagctctcgccggcgagggactccaactctaactccgccgcaaaaaatggttacaacgattacctgattgaggaggaagagggtgttaacgacaccaacgttgttcagaagtgcgccgaaatccagaacgccatctctgaaggtccgtgttttctaacttgtcttgagttttgtgtccgcttagatccgaacgttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

102

Amino Acids

11.11

Weight (kDa)

4.11

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	56, 105
AciI	CCGC	5 cut(s)	32, 56, 144, 147, 286
AclI	AACGTT	2 cut(s)	207, 300
AclWI	GGATC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	26, 178
AflIII	ACRYGT	2 cut(s)	96, 103
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	56, 224
AspS9I	GGNCC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	2 cut(s)	80, 147
BlsI	GCNGC	2 cut(s)	81, 148
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 178
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	26, 178
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	56, 105
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	26, 178
BsmFI	GGGAC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	22, 292
BspACI	CCGC	5 cut(s)	32, 56, 144, 147, 286
BspFNI	CGCG	2 cut(s)	56, 105
BspPI	GGATC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	2 cut(s)	22, 292
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstFNI	CGCG	2 cut(s)	56, 105
BstHHI	GCGC	2 cut(s)	56, 224
BstKTI	GATC	2 cut(s)	25, 295
BstMBI	GATC	2 cut(s)	22, 292
BstUI	CGCG	2 cut(s)	56, 105
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	22, 292
BstYI	RGATCY	2 cut(s)	22, 292
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	2 cut(s)	56, 224
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	1 cut(s)	112
CviKI_1	RGCY	1 cut(s)	112
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	2 cut(s)	24, 294
DpnII	GATC	2 cut(s)	22, 292
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	2 cut(s)	47, 133
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	80, 147
Fsp4HI	GCNGC	2 cut(s)	80, 147
GlaI	GCGC	2 cut(s)	55, 223
GluI	GCNGC	2 cut(s)	80, 147
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	2 cut(s)	56, 224
Hin6I	GCGC	2 cut(s)	54, 222
HinP1I	GCGC	2 cut(s)	54, 222
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	37, 43, 66, 128
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	94, 196
Hpy188I	TCNGA	5 cut(s)	42, 65, 216, 247, 297
Hpy188III	TCNNGA	2 cut(s)	232, 272
Hpy8I	GTNNAC	2 cut(s)	94, 196
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	3 cut(s)	96, 207, 300
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	3 cut(s)	96, 207, 300
HspAI	GCGC	2 cut(s)	54, 222
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	22, 292
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	33, 98, 122, 132, 185, 245
Lsp1109I	GCAGC	1 cut(s)	66
MaeII	ACGT	3 cut(s)	96, 207, 300
MaeIII	GTNAC	2 cut(s)	99, 158
MalI	GATC	2 cut(s)	24, 294
MboI	GATC	2 cut(s)	22, 292
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	2 cut(s)	22, 292
MluI	ACGCGT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	43, 156
MnlI	CCTC	4 cut(s)	117, 172, 175, 181
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	56, 105
NaeI	GCCGGC	1 cut(s)	120
NdeII	GATC	2 cut(s)	22, 292
NgoMIV	GCCGGC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 204
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	37, 43, 66
PkrI	GCNGC	2 cut(s)	81, 148
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	97
Psp1406I	AACGTT	2 cut(s)	207, 300
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	22, 292
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	80, 147
Sau3AI	GATC	2 cut(s)	22, 292
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	122
SetI	ASST	6 cut(s)	99, 114, 174, 210, 253, 303
SgrAI	CRCCGGYG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	5 cut(s)	32, 56, 144, 147, 286
TaiI	ACGT	3 cut(s)	99, 210, 303
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	37, 43, 66
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	99
TspGWI	ACGGA	2 cut(s)	36, 243
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.