Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Forward (+)

20452846 .. 20455384

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCAGTTCTGCTCTCAACTCTCGCGACGGAGATTGTGATCCCCGTCGCCGCTGTCGTGGGGATCGTGTTCTCGCTCGTCCAGTGGTTCCTGGTCTCGCTCGTGAAGATCACGCCCGAGCGCAACGCGCCGCCGTCCGGCCCCAACAGTAACAAGAACGGTTGCAATGATTACCTAATCGAGGAGGAGGAAGGCTTGAATGACCAGAACGTCGTCGTTAAGTGCGCTGAGATACAGAACGCTATCTCTGAAGGTTCAACATCCTTTCTTTTCACCATGTACCAGTATGTTGGGGTCTTCATGGTTGTATTTGCAATCCTGATCTTCCTCTTCCTCGGGTCTGTGGAGGGCTTCAGCACAAAGAGCCAGCCCTGCACCTATGATGCCGCAAAGACCTGCAAGCCAGCACTTGCAACTGCAATTTTCAGCACTGTAGCTTTTGTACTTGGTGGTATAACCTCTGTCCTGTCTGGTTTTCTTGGCATGAAAATTGCCACTTATGCCAATGCTAGGACAACATTGGAGGCCAGAAAAGGTGTTGGGAAGGCCTTTATCACTGCATTTAGGTCTGGTGCAGTTATGGGTTTCCTCCTTGCAGCAAATGGTCTTTTAGTACTTTTCATTACTATCAATCTCTTTAAGCTGTACTATGGTGATGACTGGGAAGGACTTTTTGAGTCCATTACTGGCTATGGTCTTGGTGGATCATCTATGGCTCTCTTTGGGAGAGTCGGTGGTGGTATCTATACCAAGGCTGCCGATGTTGGGGCTGACCTGGTAGGAAAGGTTGAAAGAAACATTCCTGAAGATGACCCAAGAAACCCAGCTGTCATTGCTGACAACGTTGGTGACAATGTTGGGGATATTGCTGGTATGGGATCTGATCTCTTTGGCTCATATGCCGAATCATCTTGTGCTGCCTTGGTTGTTGCTTCCATTTCCTCATTTGGAATCAACCATGAGTTCACCCCTATGTTGTATCCTCTCCTCATCAGTTCTGTGGGCATCATTGTTTGTTTAATCACAACCCTATTTGCCACTGATTTCTTTGAGATCAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

355

Amino Acids

37.49

Weight (kDa)

4.61

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	404
AccII	CGCG	2 cut(s)	26, 128
AciI	CCGC	3 cut(s)	51, 131, 387
AclI	AACGTT	1 cut(s)	843
AclWI	GGATC	4 cut(s)	34, 71, 712, 886
AcuI	CTGAAG	3 cut(s)	270, 337, 825
AfaI	GTAC	4 cut(s)	281, 444, 615, 647
AfiI	CCNNNNNNNGG	4 cut(s)	137, 181, 510, 765
AgsI	TTSAA	3 cut(s)	199, 258, 791
AjnI	CCWGG	2 cut(s)	90, 774
AluBI	AGCT	3 cut(s)	437, 643, 827
AluI	AGCT	3 cut(s)	437, 643, 827
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	4 cut(s)	34, 71, 712, 886
Ama87I	CYCGRG	2 cut(s)	116, 335
AoxI	GGCC	3 cut(s)	139, 525, 546
ApeKI	GCWGC	3 cut(s)	596, 755, 917
AspLEI	GCGC	3 cut(s)	123, 130, 227
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	4 cut(s)	265, 665, 860, 958
AvaI	CYCGRG	2 cut(s)	116, 335
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	3 cut(s)	608, 742, 904
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	92, 776
BciVI	GTATCC	1 cut(s)	990
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	990
BisI	GCNGC	6 cut(s)	51, 131, 387, 597, 756, 918
BlsI	GCNGC	6 cut(s)	52, 132, 388, 598, 757, 919
BmcAI	AGTACT	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	92, 776
BmeT110I	CYCGRG	2 cut(s)	116, 335
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	89, 142
BmrFI	CCNGG	2 cut(s)	92, 776
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	2 cut(s)	373, 1014
BmuI	ACTGGG	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	3 cut(s)	334, 750, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 181, 510, 765
Bse1I	ACTGG	4 cut(s)	82, 283, 665, 691
Bse3DI	GCAATG	2 cut(s)	172, 831
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	92, 776
BseDI	CCNNGG	3 cut(s)	334, 750, 921
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	4 cut(s)	137, 181, 510, 765
BseMI	GCAATG	2 cut(s)	172, 831
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	4 cut(s)	82, 283, 665, 691
BseRI	GAGGAG	3 cut(s)	197, 200, 977
BseXI	GCAGC	3 cut(s)	608, 742, 904
BseYI	CCCAGC	1 cut(s)	823
BsgI	GTGCAG	2 cut(s)	358, 594
Bsh1236I	CGCG	2 cut(s)	26, 128
BshFI	GGCC	3 cut(s)	141, 527, 548
BsiHKCI	CYCGRG	2 cut(s)	116, 335
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	4 cut(s)	137, 181, 510, 765
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	141, 527, 548
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	2 cut(s)	116, 335
Bsp143I	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
Bsp68I	TCGCGA	1 cut(s)	26
BspACI	CCGC	3 cut(s)	51, 131, 387
BspANI	GGCC	3 cut(s)	141, 527, 548
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	26, 128
BspLI	GGNNCC	2 cut(s)	89, 142
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	4 cut(s)	34, 71, 712, 886
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	172, 831
BsrI	ACTGG	4 cut(s)	82, 283, 665, 691
BssECI	CCNNGG	3 cut(s)	334, 750, 921
BssMI	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	750, 921
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	92, 776
Bst4CI	ACNGT	3 cut(s)	149, 161, 433
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	368, 401, 405
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	2 cut(s)	26, 128
BstHHI	GCGC	3 cut(s)	123, 130, 227
BstKTI	GATC	8 cut(s)	42, 66, 111, 324, 707, 881, 886, 1056
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 363, 372, 500, 833
BstNI	CCWGG	2 cut(s)	92, 776
BstSCI	CCNGG	2 cut(s)	90, 774
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	26, 128
BstV1I	GCAGC	3 cut(s)	608, 742, 904
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	878
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	878
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	141, 527, 548
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	4 cut(s)	89, 429, 555, 1038
BtuMI	TCGCGA	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	3 cut(s)	368, 401, 405
CfoI	GCGC	3 cut(s)	123, 130, 227
Cfr13I	GGNCC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	774
Csp6I	GTAC	4 cut(s)	280, 443, 614, 646
CviAII	CATG	4 cut(s)	277, 301, 484, 959
CviQI	GTAC	4 cut(s)	280, 443, 614, 646
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	8 cut(s)	41, 65, 110, 323, 706, 880, 885, 1055
DpnII	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	750, 921
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	270, 337, 825
Eco88I	CYCGRG	2 cut(s)	116, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	90, 774
EcoT14I	CCWWGG	2 cut(s)	750, 921
ErhI	CCWWGG	2 cut(s)	750, 921
FaeI	CATG	4 cut(s)	280, 304, 487, 962
FatI	CATG	4 cut(s)	276, 300, 483, 958
FauNDI	CATATG	1 cut(s)	898
Fnu4HI	GCNGC	6 cut(s)	51, 131, 387, 597, 756, 918
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	6 cut(s)	51, 131, 387, 597, 756, 918
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	3 cut(s)	122, 129, 226
GluI	GCNGC	6 cut(s)	51, 131, 387, 597, 756, 918
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	3 cut(s)	141, 527, 548
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	3 cut(s)	123, 130, 227
Hin1II	CATG	4 cut(s)	280, 304, 487, 962
Hin6I	GCGC	3 cut(s)	121, 128, 225
HinP1I	GCGC	3 cut(s)	121, 128, 225
HinfI	GANTC	4 cut(s)	677, 729, 905, 951
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	265, 665, 860, 958
Hpy166II	GTNNAC	1 cut(s)	966
Hpy188I	TCNGA	2 cut(s)	250, 883
Hpy188III	TCNNGA	4 cut(s)	25, 103, 319, 803
Hpy8I	GTNNAC	1 cut(s)	966
Hpy99I	CGWCG	4 cut(s)	31, 50, 215, 218
HpyAV	CCTTC	4 cut(s)	185, 245, 538, 659
HpyCH4III	ACNGT	3 cut(s)	149, 161, 433
HpyCH4IV	ACGT	2 cut(s)	210, 843
HpyCH4V	TGCA	9 cut(s)	165, 314, 375, 399, 413, 419, 560, 575, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 363, 372, 500, 833
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	210, 843
Hsp92II	CATG	4 cut(s)	280, 304, 487, 962
HspAI	GCGC	3 cut(s)	121, 128, 225
Kzo9I	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
Lsp1109I	GCAGC	3 cut(s)	608, 742, 904
LweI	GCATC	2 cut(s)	373, 1014
MabI	ACCWGGT	1 cut(s)	774
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	210, 843
MaeIII	GTNAC	2 cut(s)	149, 848
MalI	GATC	8 cut(s)	41, 65, 110, 323, 706, 880, 885, 1055
MboI	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
MboII	GAAGA	5 cut(s)	118, 289, 316, 322, 818
MflI	RGATCY	1 cut(s)	878
MluCI	AATT	2 cut(s)	420, 489
MlyI	GAGTC	2 cut(s)	686, 738
MseI	TTAA	3 cut(s)	219, 639, 1019
MslI	CAYNNNNRTG	1 cut(s)	971
MspA1I	CMGCKG	2 cut(s)	53, 827
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	92, 776
MvaI	CCWGG	2 cut(s)	92, 776
MvnI	CGCG	2 cut(s)	26, 128
MwoI	GCNNNNNNNGC	5 cut(s)	127, 363, 372, 500, 833
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
NlaIII	CATG	4 cut(s)	280, 304, 487, 962
NlaIV	GGNNCC	2 cut(s)	89, 142
NmuCI	GTSAC	1 cut(s)	848
NruI	TCGCGA	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 63
PfeI	GAWTC	2 cut(s)	905, 951
PkrI	GCNGC	6 cut(s)	52, 132, 388, 598, 757, 919
PleI	GAGTC	2 cut(s)	685, 737
PpsI	GAGTC	2 cut(s)	685, 737
Psp1406I	AACGTT	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	90, 774
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	2 cut(s)	90, 774
PspN4I	GGNNCC	2 cut(s)	89, 142
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	878
PvuII	CAGCTG	1 cut(s)	827
RruI	TCGCGA	1 cut(s)	26
RsaI	GTAC	4 cut(s)	281, 444, 615, 647
RsaNI	GTAC	4 cut(s)	280, 443, 614, 646
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	3 cut(s)	219, 639, 1019
SatI	GCNGC	6 cut(s)	51, 131, 387, 597, 756, 918
Sau3AI	GATC	8 cut(s)	39, 63, 108, 321, 704, 878, 883, 1053
Sau96I	GGNCC	1 cut(s)	140
ScaI	AGTACT	1 cut(s)	615
SchI	GAGTC	2 cut(s)	686, 738
ScrFI	CCNGG	2 cut(s)	92, 776
SexAI	ACCWGGT	1 cut(s)	774
SfaNI	GCATC	2 cut(s)	373, 1014
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	971
Sse9I	AATT	2 cut(s)	420, 489
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	51, 131, 387
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	90, 774
StyI	CCWWGG	2 cut(s)	750, 921
TaaI	ACNGT	3 cut(s)	149, 161, 433
TaiI	ACGT	2 cut(s)	213, 846
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	420, 489
TatI	WGTACW	3 cut(s)	442, 613, 645
TauI	GCSGC	3 cut(s)	53, 133, 389
TfiI	GAWTC	2 cut(s)	905, 951
Tru1I	TTAA	3 cut(s)	219, 639, 1019
Tru9I	TTAA	3 cut(s)	219, 639, 1019
TscAI	CASTG	4 cut(s)	89, 436, 562, 1045
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	3 cut(s)	596, 755, 917
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	3 cut(s)	289, 500, 610
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	89, 436, 562, 1045
XagI	CCTNNNNNAGG	1 cut(s)	179
XspI	CTAG	1 cut(s)	510
ZrmI	AGTACT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.