Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Forward (+)

19661330 .. 19663155

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTTGCTGAGTGAGGGACTGACTCAGGTGGTGATTCCCTTGGCTGCGGTTGTGGGGATTGGTTTTGCTTTGCTGCAATGGTTTTTGGTGTCAAAGGTGAAGGTCTCTGGCGTGTATGGTGAGCGAAATGGGTTCAAGGACAAGCTCATTGCAGACGAAGAAGAGGGTGTTAACTCTCTTGAGGTTACCAACAAGTGTGCTGAGATTCAACATGCCATTTCCATAGGGGCGACCTCCTTCCTGTTCACCCAATACAGATACCTCAGCATCTTCGTCGGTGTTTTTAGCACCATAATCTTCCTCTTCCTTGGCTCAGTGAAGGGTTTTAGCACTAAAAGCGAAGCCTGCACATATAACACAGGTAATATGTGCAAACCAGCATTAGCCAACGCCTTCTTTAGTACTGTTGCCTTCTTGCTTGGTGCCTTTACATCCGTCCTCTCTGGATTTCTCGGGATGAAGATTGCAACTTATGCCAATGCTAGAACAACCCTAGAAGCAAGGAGGGGTGTTGGGAAGGCTTTCATTACCGCCTTTCGCTCAGGTGCTGTGATGGGGTTCCTTCTTGCTGCCAATGGCCTATTGGTGCTGTATATCACTATCAATTTGTTTAAGTTGTATTATGGGGATGACTGGGAAGGACTGTATGAGTCAATTACTGGTTATGGACTTGGAGGTTCTTCAATGGCACTCTTTGGGAGAGTTGGGGGAGGTATATACACGAAAGCTGCTGATGTTGGTGCTGATCTTGTCGGGAAAGTTGAACGAAATATCCCTGAAGATGATCCACGAAACCCCGCCGTTATTGCAGACAATGTGGGTGACAATGTAGGAGACATTGCCGGGATGGGATCTGACCTGTTTGGATCTTATGCCGAGTCTTCTTGTGCAGCATTGTTTGTTGCATCCATATCATCCTTTGGCATCGGTCATGACTACACCGCCATGTCGTATCCCTTGATCGATAAGCTCAATGGGGATTGTGGTTTGTTTGGTAACAACCCTTTTCGCAACCGATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

343

Amino Acids

36.3

Weight (kDa)

5.33

Isoelectric Point (pI)

19.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	4 cut(s)	50, 534, 801, 945
AclWI	GGATC	3 cut(s)	782, 862, 877
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	139, 212, 687, 767
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	3 cut(s)	148, 731, 973
AluI	AGCT	3 cut(s)	148, 731, 973
Alw26I	GTCTC	2 cut(s)	112, 831
AlwI	GGATC	3 cut(s)	782, 862, 877
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	5 cut(s)	47, 76, 572, 731, 893
Asp700I	GAANNNNTTC	1 cut(s)	524
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	5 cut(s)	46, 112, 134, 241, 836
AvaI	CYCGRG	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	876
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	5 cut(s)	34, 63, 559, 718, 905
BccI	CCATC	2 cut(s)	550, 844
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciVI	GTATCC	1 cut(s)	966
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	2 cut(s)	112, 831
BfaI	CTAG	2 cut(s)	486, 497
BfuI	GTATCC	1 cut(s)	966
BisI	GCNGC	5 cut(s)	48, 77, 573, 732, 894
BlsI	GCNGC	5 cut(s)	49, 78, 574, 733, 895
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	427, 563
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	3 cut(s)	279, 917, 936
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	876
Bpu10I	CCTNAGC	2 cut(s)	266, 544
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	847
Bsa29I	ATCGAT	1 cut(s)	966
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	42, 310
Bse1I	ACTGG	2 cut(s)	641, 667
Bse3DI	GCAATG	3 cut(s)	86, 150, 840
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	42, 310
BseGI	GGATG	6 cut(s)	434, 465, 637, 855, 908, 917
BseMI	GCAATG	3 cut(s)	86, 150, 840
BseMII	CTCAG	5 cut(s)	41, 195, 280, 330, 558
BseNI	ACTGG	2 cut(s)	641, 667
BseXI	GCAGC	5 cut(s)	34, 63, 559, 718, 905
BsgI	GTGCAG	2 cut(s)	334, 912
BshFI	GGCC	1 cut(s)	582
BshNI	GGYRCC	1 cut(s)	425
BshVI	ATCGAT	1 cut(s)	966
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	112, 831
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	582
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
BspACI	CCGC	4 cut(s)	50, 534, 801, 945
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	5 cut(s)	40, 196, 279, 329, 557
BspDI	ATCGAT	1 cut(s)	966
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	2 cut(s)	427, 563
BspPI	GGATC	3 cut(s)	782, 862, 877
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	3 cut(s)	86, 150, 840
BsrI	ACTGG	2 cut(s)	641, 667
BssECI	CCNNGG	2 cut(s)	42, 310
BssMI	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
BssT1I	CCWWGG	2 cut(s)	42, 310
Bst4CI	ACNGT	2 cut(s)	409, 648
Bst6I	CTCTTC	2 cut(s)	159, 311
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	6 cut(s)	11, 27, 204, 266, 316, 544
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	6 cut(s)	434, 465, 637, 855, 908, 917
BstKTI	GATC	6 cut(s)	751, 790, 857, 872, 966, 1022
BstMAI	GTCTC	2 cut(s)	112, 831
BstMBI	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 348, 476, 809
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	845
BstV1I	GCAGC	5 cut(s)	34, 63, 559, 718, 905
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	2 cut(s)	854, 869
BstYI	RGATCY	2 cut(s)	854, 869
Bsu15I	ATCGAT	1 cut(s)	966
BsuI	GTATCC	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	582
BsuTUI	ATCGAT	1 cut(s)	966
BtsCI	GGATG	6 cut(s)	434, 465, 637, 855, 908, 917
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	1 cut(s)	934
ClaI	ATCGAT	1 cut(s)	966
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	215, 935, 949
CviJI	RGCY	9 cut(s)	47, 148, 315, 347, 389, 524, 582, 731, 973
CviKI_1	RGCY	9 cut(s)	47, 148, 315, 347, 389, 524, 582, 731, 973
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	6 cut(s)	11, 27, 204, 266, 316, 544
DpnI	GATC	6 cut(s)	750, 789, 856, 871, 965, 1021
DpnII	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
Eam1104I	CTCTTC	2 cut(s)	159, 311
EarI	CTCTTC	2 cut(s)	159, 311
Eco130I	CCWWGG	2 cut(s)	42, 310
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	42, 310
ErhI	CCWWGG	2 cut(s)	42, 310
FaeI	CATG	3 cut(s)	218, 938, 952
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	214, 934, 948
FauI	CCCGC	1 cut(s)	808
Fnu4HI	GCNGC	5 cut(s)	48, 77, 573, 732, 894
FokI	GGATG	6 cut(s)	421, 472, 644, 862, 895, 904
Fsp4HI	GCNGC	5 cut(s)	48, 77, 573, 732, 894
FspBI	CTAG	2 cut(s)	486, 497
GluI	GCNGC	5 cut(s)	48, 77, 573, 732, 894
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	3 cut(s)	218, 938, 952
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	25, 37, 208, 653, 881
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	5 cut(s)	46, 112, 134, 241, 836
Hpy166II	GTNNAC	2 cut(s)	175, 249
Hpy188I	TCNGA	1 cut(s)	859
Hpy188III	TCNNGA	5 cut(s)	182, 447, 457, 757, 935
Hpy8I	GTNNAC	2 cut(s)	175, 249
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	8 cut(s)	97, 250, 316, 406, 424, 514, 575, 635
HpyCH4III	ACNGT	2 cut(s)	409, 648
HpyCH4V	TGCA	8 cut(s)	79, 155, 351, 375, 470, 812, 893, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 348, 476, 809
HpyF3I	CTNAG	6 cut(s)	11, 27, 204, 266, 316, 544
Hsp92II	CATG	3 cut(s)	218, 938, 952
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
Lsp1109I	GCAGC	5 cut(s)	34, 63, 559, 718, 905
LweI	GCATC	3 cut(s)	279, 917, 936
MaeI	CTAG	2 cut(s)	486, 497
MaeIII	GTNAC	3 cut(s)	187, 824, 998
MalI	GATC	6 cut(s)	750, 789, 856, 871, 965, 1021
MboI	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
MboII	GAAGA	9 cut(s)	173, 176, 265, 292, 298, 475, 675, 794, 876
MflI	RGATCY	2 cut(s)	854, 869
MluCI	AATT	2 cut(s)	607, 657
MlyI	GAGTC	3 cut(s)	19, 662, 890
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	2 cut(s)	174, 615
MslI	CAYNNNNRTG	1 cut(s)	947
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	4 cut(s)	339, 348, 476, 809
NciI	CCSGG	1 cut(s)	847
NdeII	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
NlaIII	CATG	3 cut(s)	218, 938, 952
NlaIV	GGNNCC	2 cut(s)	427, 563
NmeAIII	GCCGAG	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	1 cut(s)	218
PagI	TCATGA	1 cut(s)	934
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	37, 208
PkrI	GCNGC	5 cut(s)	49, 78, 574, 733, 895
PleI	GAGTC	3 cut(s)	19, 661, 889
PpsI	GAGTC	3 cut(s)	19, 661, 889
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	427, 563
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	854, 869
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	174, 615
SatI	GCNGC	5 cut(s)	48, 77, 573, 732, 894
Sau3AI	GATC	6 cut(s)	748, 787, 854, 869, 963, 1019
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	3 cut(s)	19, 662, 890
ScrFI	CCNGG	1 cut(s)	847
SfaNI	GCATC	3 cut(s)	279, 917, 936
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	607, 657
SsiI	CCGC	4 cut(s)	50, 534, 801, 945
SspMI	CTAG	2 cut(s)	486, 497
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	2 cut(s)	42, 310
TaaI	ACNGT	2 cut(s)	409, 648
TaqI	TCGA	1 cut(s)	966
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	2 cut(s)	607, 657
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	37, 208
Tru1I	TTAA	2 cut(s)	174, 615
Tru9I	TTAA	2 cut(s)	174, 615
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	5 cut(s)	47, 76, 572, 731, 893
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	476, 517
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	324
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	2 cut(s)	486, 497
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.