Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Reverse (-)

1904263 .. 1907327

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG027400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGGGCAACTATTCTCCCAGATCTCGGGGCGGAGATTCTGATTCCGTTCTGCGCGGTGGTCGGAATCGTGTTCTCGCTGCTCCAGTGGGTGTACGTGTCACGCGTCCAGCTCTCGCCGGCGAGGGACTCCAACTCTAACTCCGCCGCAAAAAATGGTTACAACGATTACCTGATTGAGGAGGAAGAGGGTGTTAACGACACCAACGTTGTTCAGAAGTGCGCCGAAATCCAGAACGCCATCTCTGAAGGAGCAACATCATTCCTTTTCACGGAATATAAGTATGTTGGTGCTTTTATGGTGGCTTTTGCAGTCTTGATATTTGTTTTCCTTGGCTCTGTGGAGGGATTTAGCACTAGTAGCCATACATGTGCTTATGATGAAACAAAGATATGCAAACCTGCTCTTGCAACTGCCATATTCAGTACCATTTCCTTTTTGCTTGGTGCTATAACTTCAGTGGTTTCTGGATTCCTTGGTATGAAGATTGCCACGTATGCAAATGCCAGAACTACTTTGGAGGCAAGAAAAGGTGTTGGGAAGGCTTTTATAGTAGCATTTAGATCAGGTGCTGTCATGGGATTTCTCCTTGCTGCAAATGGTTTATTAGTTTTATACATTGTGATCCTTGTCTTCAAGATGTTCTATGGTGAGGATTGGGGTGGTCTTTTTGAGTCCATAACTGGGTATGGTCTTGGTGGATCTTCCATGGCTCTTTTTGGCAGAGTTGGTGGAGGCATCTATACCAAAGCTGCTGATGTTGGTGCTGATCTAGTTGGCAAAGTTGAAAGGAATATTCCTGAGGATGACCCAAGGAACCCAGCTGCAGCTGTTCTTGTGCGTGTGTGTTGGGTTGTGGGCTGGGCTTATCATCGGATTTGTGACAGAGTATTATACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

300

Amino Acids

32.2

Weight (kDa)

5.32

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	59 - 276	3.3e-64	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccII	CGCG	2 cut(s)	56, 105
AciI	CCGC	4 cut(s)	32, 56, 144, 147
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	2 cut(s)	619, 709
AcuI	CTGAAG	2 cut(s)	267, 441
AfaI	GTAC	2 cut(s)	95, 427
AfiI	CCNNNNNNNGG	4 cut(s)	26, 178, 271, 684
AflIII	ACRYGT	3 cut(s)	96, 103, 368
AgsI	TTSAA	2 cut(s)	637, 788
AhlI	ACTAGT	1 cut(s)	356
AluBI	AGCT	4 cut(s)	112, 752, 824, 830
AluI	AGCT	4 cut(s)	112, 752, 824, 830
AlwI	GGATC	2 cut(s)	619, 709
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	26
ApeKI	GCWGC	5 cut(s)	79, 593, 752, 824, 827
AspLEI	GCGC	2 cut(s)	56, 224
AsuHPI	GGTGA	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	625
BbvI	GCAGC	5 cut(s)	66, 580, 739, 811, 839
BccI	CCATC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 773
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	6 cut(s)	80, 147, 594, 753, 825, 828
BlsI	GCNGC	6 cut(s)	81, 148, 595, 754, 826, 829
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	818
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	68
BsaAI	YACGTR	2 cut(s)	97, 495
BsaJI	CCNNGG	4 cut(s)	331, 475, 708, 812
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 178, 271, 684
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	85, 688, 898
Bse21I	CCTNAGG	1 cut(s)	801
BseDI	CCNNGG	4 cut(s)	331, 475, 708, 812
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	4 cut(s)	26, 178, 271, 684
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	3 cut(s)	85, 688, 898
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	66, 580, 739, 811, 839
BseYI	CCCAGC	2 cut(s)	820, 861
Bsh1236I	CGCG	2 cut(s)	56, 105
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	26, 178, 271, 684
BsmFI	GGGAC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	22, 563, 624, 701, 769
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	4 cut(s)	32, 56, 144, 147
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	2 cut(s)	56, 105
BspLI	GGNNCC	1 cut(s)	818
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	2 cut(s)	619, 709
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	85, 688, 898
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	331, 475, 708, 812
BssMI	GATC	5 cut(s)	22, 563, 624, 701, 769
BssT1I	CCWWGG	4 cut(s)	331, 475, 708, 812
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	2 cut(s)	97, 495
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	801
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	2 cut(s)	56, 105
BstHHI	GCGC	2 cut(s)	56, 224
BstKTI	GATC	5 cut(s)	25, 566, 627, 704, 772
BstMBI	GATC	5 cut(s)	22, 563, 624, 701, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 497
BstNSI	RCATGY	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	56, 105
BstV1I	GCAGC	5 cut(s)	66, 580, 739, 811, 839
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	2 cut(s)	22, 701
BstYI	RGATCY	2 cut(s)	22, 701
Bsu36I	CCTNAGG	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	2 cut(s)	92, 465
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	2 cut(s)	56, 224
Cfr10I	RCCGGY	1 cut(s)	118
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	94, 426
CviAII	CATG	3 cut(s)	369, 577, 709
CviQI	GTAC	2 cut(s)	94, 426
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	5 cut(s)	24, 565, 626, 703, 771
DpnII	GATC	5 cut(s)	22, 563, 624, 701, 769
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	2 cut(s)	47, 133
Eco130I	CCWWGG	4 cut(s)	331, 475, 708, 812
Eco57I	CTGAAG	2 cut(s)	267, 441
Eco81I	CCTNAGG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoT14I	CCWWGG	4 cut(s)	331, 475, 708, 812
ErhI	CCWWGG	4 cut(s)	331, 475, 708, 812
FaeI	CATG	3 cut(s)	372, 580, 712
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	368, 576, 708
Fnu4HI	GCNGC	6 cut(s)	80, 147, 594, 753, 825, 828
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	6 cut(s)	80, 147, 594, 753, 825, 828
FspBI	CTAG	2 cut(s)	357, 773
GlaI	GCGC	2 cut(s)	55, 223
GluI	GCNGC	6 cut(s)	80, 147, 594, 753, 825, 828
GsaI	CCCAGC	2 cut(s)	824, 865
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	2 cut(s)	56, 224
Hin1II	CATG	3 cut(s)	372, 580, 712
Hin6I	GCGC	2 cut(s)	54, 222
HinP1I	GCGC	2 cut(s)	54, 222
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	6 cut(s)	37, 43, 66, 128, 471, 674
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	2 cut(s)	94, 196
Hpy188I	TCNGA	5 cut(s)	42, 65, 216, 247, 876
Hpy188III	TCNNGA	5 cut(s)	232, 316, 468, 637, 800
Hpy8I	GTNNAC	2 cut(s)	94, 196
HpyAV	CCTTC	2 cut(s)	242, 535
HpyCH4IV	ACGT	3 cut(s)	96, 207, 494
HpyCH4V	TGCA	6 cut(s)	311, 396, 410, 500, 596, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 497
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	3 cut(s)	96, 207, 494
Hsp92II	CATG	3 cut(s)	372, 580, 712
HspAI	GCGC	2 cut(s)	54, 222
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	22, 563, 624, 701, 769
LmnI	GCTCC	2 cut(s)	87, 251
Lsp1109I	GCAGC	5 cut(s)	66, 580, 739, 811, 839
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	2 cut(s)	357, 773
MaeII	ACGT	3 cut(s)	96, 207, 494
MaeIII	GTNAC	3 cut(s)	99, 158, 881
MalI	GATC	5 cut(s)	24, 565, 626, 703, 771
MboI	GATC	5 cut(s)	22, 563, 624, 701, 769
MboII	GAAGA	4 cut(s)	197, 496, 625, 696
MflI	RGATCY	2 cut(s)	22, 701
MluI	ACGCGT	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	122, 683
MmeI	TCCRAC	2 cut(s)	43, 156
MnlI	CCTC	9 cut(s)	117, 172, 175, 181, 337, 514, 646, 728, 796
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	824, 830
MspI	CCGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	56, 105
MwoI	GCNNNNNNNGC	2 cut(s)	360, 497
NaeI	GCCGGC	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	5 cut(s)	22, 563, 624, 701, 769
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	372, 580, 712
NlaIV	GGNNCC	1 cut(s)	818
NmuCI	GTSAC	2 cut(s)	99, 881
NspI	RCATGY	1 cut(s)	372
PciI	ACATGT	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 204
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	37, 43, 66, 471
PkrI	GCNGC	6 cut(s)	81, 148, 595, 754, 826, 829
PleI	GAGTC	2 cut(s)	122, 682
PpsI	GAGTC	2 cut(s)	122, 682
Ppu21I	YACGTR	2 cut(s)	97, 495
PscI	ACATGT	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	207
PspFI	CCCAGC	2 cut(s)	820, 861
PspN4I	GGNNCC	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	22, 701
PvuII	CAGCTG	2 cut(s)	824, 830
RsaI	GTAC	2 cut(s)	95, 427
RsaNI	GTAC	2 cut(s)	94, 426
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	6 cut(s)	80, 147, 594, 753, 825, 828
Sau3AI	GATC	5 cut(s)	22, 563, 624, 701, 769
SchI	GAGTC	2 cut(s)	122, 683
SfaNI	GCATC	1 cut(s)	747
SfcI	CTRYAG	1 cut(s)	825
SgrAI	CRCCGGYG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	369
SpeI	ACTAGT	1 cut(s)	356
SsiI	CCGC	4 cut(s)	32, 56, 144, 147
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	357, 773
StyI	CCWWGG	4 cut(s)	331, 475, 708, 812
TaiI	ACGT	3 cut(s)	99, 210, 497
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	4 cut(s)	37, 43, 66, 471
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	92, 465
TseFI	GTSAC	2 cut(s)	99, 881
TseI	GCWGC	5 cut(s)	79, 593, 752, 824, 827
Tsp45I	GTSAC	2 cut(s)	99, 881
TspDTI	ATGAA	2 cut(s)	396, 497
TspGWI	ACGGA	2 cut(s)	36, 287
TspRI	CASTG	2 cut(s)	92, 465
XagI	CCTNNNNNAGG	1 cut(s)	176
XceI	RCATGY	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	2 cut(s)	357, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.