Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Reverse (-)

38874496 .. 38874830

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTTCTTGTGGTGTTTCTGGGTTCGATTCAGTTTCTCAAGATTTCTCATTCTTGTTTTGAAACTGATCTTGAAATAATGATATTTGGGCTATATTTTGGATGGGAATTAAATTACATCGATTTTGGTCTAATTTTTTGCTTGCAGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

79

Amino Acids

9.03

Weight (kDa)

5.09

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	62, 74
AhlI	ACTAGT	1 cut(s)	175
AluBI	AGCT	2 cut(s)	155, 163
AluI	AGCT	2 cut(s)	155, 163
Alw26I	GTCTC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	228
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	156
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	120
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	150, 224
BseXI	GCAGC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	151, 223
BspDI	ATCGAT	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	159, 210
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	120
CviJI	RGCY	4 cut(s)	91, 155, 163, 215
CviKI_1	RGCY	4 cut(s)	91, 155, 163, 215
DdeI	CTNAG	2 cut(s)	159, 210
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	228
FaiI	YATR	2 cut(s)	94, 198
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	191
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	40, 71, 225
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	159, 210
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	5, 131, 197, 204
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	176
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MluCI	AATT	3 cut(s)	107, 112, 132
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	188
SetI	ASST	4 cut(s)	150, 157, 165, 232
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	3 cut(s)	107, 112, 132
SspMI	CTAG	1 cut(s)	176
TaqI	TCGA	3 cut(s)	26, 120, 226
TasI	AATT	3 cut(s)	107, 112, 132
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseI	GCWGC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	188
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.