Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Forward (+)

21292776 .. 21294562

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTTGCTCAGTGAGGGACTGACACAGGTTGTGATTCCTTTGGCTGCGGTTGTGGGGCTTGGTTTTGCTTTGTTGCAGTGGTTTTTGGTGTCAAGGGTGAAGGTCTCAGGTGGGCATGGTGAGCGAAATGGGTACAAGGACAAGCTCATTGGAGACGAAGAAGAGGGTGTTAACTCTCTTGATGTTACCATCAAGTGTGCTGAGATCCAGCATGCCATTTCCATTGGGGCGACCTCTTTTCTGTTTACCCAATACAAATACCTCAGCATCTTCGTTGGCGTTTTTAGCGCCATCATCTTCCTCTTCCTTGGCTCAGTGAAGGGTTTCAGCACCAAAAGTGAACCCTGCACATATAACACAGGCAACATGTGCAAACCGGCACTAGCCAACGCCTTCTTCAGTACCGTTGCCTTCTTGCTCGGTGCTTTTACATCTGTTCTCTCTGGCTTTCTTGGGATGAAGATCGCAACGTATGCCAATGCCAGAACAACCCTAGAAGCAAGGAGGGGTGTTGGGAAGGCTTTCATCACCGCTTTTCGCTCGGGTGCTGTGATGGGGTTCCTTCTTTCTGCCAATGGACTTTTGGTGCTGTATGCGTCTATAAACCTATTTAAGCTGTATTATGGTGATGACTGGGAAGGACTGTACGAGTCAATTACTGGTTATGGACTTGGAGGTTCTTCAATGGCACTTTTTGGAAGAGTCGGGGGAGGCATATACACGAAAGCAGCTGATGTCGGTGCTGATCTTGTTGGGAAAGTTGAACGAAATATCCCCGAAGATGATCCACGAAACCCTGCTGTTATTGCAGACAATGTGGGTGACAATGTAGGAGACATTGCCGGGATGGGATCTGATCTGTTCGGATCTTATGCTGAGTCATCTTGTGCAGCATTATTTGTTGCATCCATATCATCCTTTGGCATCGGTCATGACTACACCGCTATGTCGTATCCCTTGATCGATAAGCTCAGTGGGGATTGTGGTTTGTTTGATAACAACCCTTTTTGCAACCGATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

343

Amino Acids

36.15

Weight (kDa)

5.15

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	64 - 322	6.9e-83	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 534, 945
AclWI	GGATC	4 cut(s)	202, 782, 862, 877
AcuI	CTGAAG	1 cut(s)	385
AfaI	GTAC	3 cut(s)	137, 406, 650
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	687, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	4 cut(s)	148, 619, 734, 973
AluI	AGCT	4 cut(s)	148, 619, 734, 973
Alw26I	GTCTC	3 cut(s)	112, 150, 831
AlwI	GGATC	4 cut(s)	202, 782, 862, 877
Ama87I	CYCGRG	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	47, 731, 893
Asp700I	GAANNNNTTC	2 cut(s)	326, 524
AspLEI	GCGC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	5 cut(s)	112, 134, 523, 641, 836
AvaI	CYCGRG	1 cut(s)	544
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	34, 743, 905
BccI	CCATC	4 cut(s)	200, 302, 550, 844
BciVI	GTATCC	1 cut(s)	966
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	112, 150, 831
BfaI	CTAG	2 cut(s)	386, 497
BfoI	RGCGCY	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	966
BisI	GCNGC	3 cut(s)	48, 732, 894
BlsI	GCNGC	3 cut(s)	49, 733, 895
Bme1390I	CCNGG	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	3 cut(s)	279, 917, 936
BmuI	ACTGGG	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	847
Bsa29I	ATCGAT	1 cut(s)	966
BsaBI	GATNNNNATC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	641, 667
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	4 cut(s)	465, 855, 908, 917
BseJI	GATNNNNATC	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	7 cut(s)	25, 123, 195, 280, 330, 870, 988
BseNI	ACTGG	2 cut(s)	641, 667
BseXI	GCAGC	3 cut(s)	34, 743, 905
BsgI	GTGCAG	2 cut(s)	334, 912
BshVI	ATCGAT	1 cut(s)	966
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	380, 846
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	3 cut(s)	112, 150, 831
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	544
Bsp143I	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
BspACI	CCGC	3 cut(s)	50, 534, 945
BspCNI	CTCAG	7 cut(s)	24, 122, 196, 279, 329, 871, 987
BspDI	ATCGAT	1 cut(s)	966
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	1 cut(s)	563
BspPI	GGATC	4 cut(s)	202, 782, 862, 877
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	641, 667
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	409, 648
Bst6I	CTCTTC	3 cut(s)	159, 311, 697
BstAPI	GCANNNNNTGC	2 cut(s)	372, 476
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	7 cut(s)	11, 109, 204, 266, 316, 879, 974
BstF5I	GGATG	4 cut(s)	465, 855, 908, 917
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	9 cut(s)	210, 468, 751, 790, 857, 862, 872, 966, 1022
BstMAI	GTCTC	3 cut(s)	112, 150, 831
BstMBI	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 288, 372, 476, 809
BstNSI	RCATGY	2 cut(s)	218, 373
BstSCI	CCNGG	1 cut(s)	845
BstV1I	GCAGC	3 cut(s)	34, 743, 905
BstX2I	RGATCY	3 cut(s)	207, 854, 869
BstYI	RGATCY	3 cut(s)	207, 854, 869
Bsu15I	ATCGAT	1 cut(s)	966
BsuI	GTATCC	1 cut(s)	966
BsuTUI	ATCGAT	1 cut(s)	966
BtsCI	GGATG	4 cut(s)	465, 855, 908, 917
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	4 cut(s)	19, 86, 324, 982
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	934
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	379
ClaI	ATCGAT	1 cut(s)	966
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	136, 405, 649
CviAII	CATG	4 cut(s)	119, 215, 370, 935
CviQI	GTAC	3 cut(s)	136, 405, 649
DdeI	CTNAG	7 cut(s)	11, 109, 204, 266, 316, 879, 974
DpnI	GATC	9 cut(s)	209, 467, 750, 789, 856, 861, 871, 965, 1021
DpnII	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
Eam1104I	CTCTTC	3 cut(s)	159, 311, 697
EarI	CTCTTC	3 cut(s)	159, 311, 697
Eco130I	CCWWGG	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	4 cut(s)	122, 218, 373, 938
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	118, 214, 369, 934
Fnu4HI	GCNGC	3 cut(s)	48, 732, 894
FokI	GGATG	4 cut(s)	472, 862, 895, 904
Fsp4HI	GCNGC	3 cut(s)	48, 732, 894
FspBI	CTAG	2 cut(s)	386, 497
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	3 cut(s)	48, 732, 894
HaeII	RGCGCY	1 cut(s)	294
HapII	CCGG	2 cut(s)	380, 846
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	122, 218, 373, 938
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	37, 653, 705, 881
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	380, 846
HphI	GGTGA	5 cut(s)	112, 134, 523, 641, 836
Hpy166II	GTNNAC	3 cut(s)	175, 249, 344
Hpy188I	TCNGA	2 cut(s)	859, 869
Hpy188III	TCNNGA	2 cut(s)	182, 935
Hpy8I	GTNNAC	3 cut(s)	175, 249, 344
HpyAV	CCTTC	7 cut(s)	97, 316, 406, 424, 514, 575, 635
HpyCH4III	ACNGT	2 cut(s)	409, 648
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	7 cut(s)	79, 351, 375, 812, 893, 908, 1014
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 288, 372, 476, 809
HpyF3I	CTNAG	7 cut(s)	11, 109, 204, 266, 316, 879, 974
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	122, 218, 373, 938
HspAI	GCGC	1 cut(s)	291
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
Lsp1109I	GCAGC	3 cut(s)	34, 743, 905
LweI	GCATC	3 cut(s)	279, 917, 936
MaeI	CTAG	2 cut(s)	386, 497
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	187, 824
MalI	GATC	9 cut(s)	209, 467, 750, 789, 856, 861, 871, 965, 1021
MboI	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
MflI	RGATCY	3 cut(s)	207, 854, 869
MluCI	AATT	1 cut(s)	657
MlyI	GAGTC	3 cut(s)	662, 714, 890
MnlI	CCTC	8 cut(s)	10, 160, 247, 275, 314, 501, 671, 707
MroXI	GAANNNNTTC	2 cut(s)	326, 524
MseI	TTAA	2 cut(s)	174, 615
MslI	CAYNNNNRTG	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	2 cut(s)	380, 846
MspR9I	CCNGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	5 cut(s)	124, 288, 372, 476, 809
NciI	CCSGG	1 cut(s)	847
NdeII	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
NlaIII	CATG	4 cut(s)	122, 218, 373, 938
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	2 cut(s)	218, 373
PaeI	GCATGC	1 cut(s)	218
PagI	TCATGA	1 cut(s)	934
PciI	ACATGT	1 cut(s)	369
PdmI	GAANNNNTTC	2 cut(s)	326, 524
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	49, 733, 895
PleI	GAGTC	3 cut(s)	661, 713, 889
PpsI	GAGTC	3 cut(s)	661, 713, 889
PscI	ACATGT	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	563
PsuI	RGATCY	3 cut(s)	207, 854, 869
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	3 cut(s)	137, 406, 650
RsaNI	GTAC	3 cut(s)	136, 405, 649
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	174, 615
SatI	GCNGC	3 cut(s)	48, 732, 894
Sau3AI	GATC	9 cut(s)	207, 465, 748, 787, 854, 859, 869, 963, 1019
SchI	GAGTC	3 cut(s)	662, 714, 890
ScrFI	CCNGG	1 cut(s)	847
SfaNI	GCATC	3 cut(s)	279, 917, 936
SmiMI	CAYNNNNRTG	1 cut(s)	947
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	657
SsiI	CCGC	3 cut(s)	50, 534, 945
SspMI	CTAG	2 cut(s)	386, 497
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	409, 648
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	966
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	174, 615
Tru9I	TTAA	2 cut(s)	174, 615
TscAI	CASTG	4 cut(s)	19, 86, 324, 982
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	3 cut(s)	47, 731, 893
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	476, 517
TspRI	CASTG	4 cut(s)	19, 86, 324, 982
XceI	RCATGY	2 cut(s)	218, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmnI	GAANNNNTTC	2 cut(s)	326, 524
XspI	CTAG	2 cut(s)	386, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.