Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000897

Physical Location & Seq

Genomic Coordinates Reverse (-)

1436249 .. 1437394

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACAGGATTGAGTCTGGCTGGACGAATGGCACTCAGCATCATTGCTTTGCTGGTTTTCTGGAGCTACAAACTGTATTGGAAAAAGTTCCGGCAGGATGATAAGGCCGTTGAAGAATTCTTGGATGCGTACAAGAATATTATGCCAAGCAGGTATTCATATTCAGAAATTAAGACGGTGACGAATGATTTCAAAGATAAACTTGGTCAGGGAGGTTTTGGCTCTGTTTATAAAGGCCAGCTATCAGATGGTCATGTTGTTGCAGTAAAGATGTTGAATGATTCCAAAGGTAAAGGGCAAGATTTCATCAATGAAGTTGCTACAATAGGAAGAATTCATCATGTCAATGTAGTGCAACTAATTGGATTCTGTTCCCAGGGGTCAAAAAGAGCTCTTGTTTATGATTTCATGCCTAATGGATCTCTCGACAAATATATCTTGCGAGATGCAGAAAATAATCCTACTCTAAGTTGGGATAGAATGCATGAGATAGCTCTAGGAGTGGCTCGTGCAATTGAATATCTACACCGGGGATGTGATATTCAAATTCTACATTTTGATATTAAGCCCCACAACATTCTCCTTGACGAAAACTTTACTTCCAAAATTTCAGACTTCGGGCTTGCAAGATTTTACCCTAGAGATCAGAACACTATTTCTGTTACTGCAGCAAGAGGCACAAGGGGATATATAGCTCCAGAAATGTTCTACAATACTATTGGTGGTGTTTCCTACAAAGCTGATGTTTATAGGTTTGGAATGTTGTTACTGGAAATGGCAGGGAGGAGGAAAAACTTGAATGCATATGCAGAACATTCGAGCCAAATATATTTCCCTTCGTGGATCTATGATCAACTGGAAAAGGGATTGAGCATTGAAATTGAGGATGCCTGTGAGCATGACAAGAGAAGAGCCAAGAAGATGCTCATCGTTGCTTTGTGGTGCATACAACTCATGCCTGTGGACCGCCCTTCGATGACCAAGGTTTTAGAGATGCTTGAAGGTGAAGATGAAGTCTTGCAAATGCCTCCAAAACCGTTCTTTTGTCCCCAACAGATGCCAACTGAGGATTTACCTGATGACAGCGATGAGACAGATATTGAAGAGGATGCAGAGAGTGCTACAGAATCTACTTCCATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

381

Amino Acids

43.39

Weight (kDa)

5.39

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	64 - 333	2.2e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	65 - 331	2.5e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15690 AT1G15690
fragaria_vesca	FvH4_1g02190 FvH4_1g02190 FvH4_1g02190 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g07370 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320 FvH4_6g29320
malus_domestica	MD02G1020700.v1.1 MD04G1194100.v1.1 MD12G1206600.v1.1 MD15G1163900.v1.1 MD17G1215700.v1.1
prunus_persica	Prupe.3G091900_v2.0.a1 Prupe.6G313800_v2.0.a1 Prupe.7G250800_v2.0.a1
pyrus_communis	pycom02g01810 pycom04g17150 pycom12g19440 pycom15g14710 pycom17g22030 pycom808g00300
rosa_chinensis	RchiOBHm_Chr2g0087281 RchiOBHm_Chr2g0134531 RchiOBHm_Chr3g0456971
rosa_laevigata	RLG00000015850 RLG00000019400 RLG00000025258
rosa_multiflora	Rmu_sc0004670.1_g000006 Rmu_sc0016008.1_g000005 Rmu_sc0017477.1_g000001 Rmu_sc0017478.1_g000001 Rmu_sc0017479.1_g000001 Rmu_sc0042014.1_g000001 Rmu_ssc0000438.1_g000050
rosa_roxburghii	Rroxscaffold_2G00110050 Rroxscaffold_2G00153750 Rroxscaffold_6G00422310
rosa_rugosa	Rorug01G0473600 Rorug02G0318400 Rorug03G0017900
rosa_samantha	Rh2AG027400 Rh2AG375000 Rh2AG375100 Rh2BG026600 Rh2BG376300 Rh2CG027700 Rh2CG354500 Rh2DG027300 Rh2DG393700 Rh3AG077800 Rh3BG079700 Rh3CG079600 Rh3DG081400
rosa_wichuraiana	Rw2G002150 Rw2G030190 Rw3G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	1 cut(s)	967
AclWI	GGATC	2 cut(s)	427, 851
AcsI	RAATTY	4 cut(s)	116, 333, 546, 606
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	9 cut(s)	113, 193, 277, 518, 545, 799, 878, 1001, 1103
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	6 cut(s)	66, 241, 392, 494, 695, 740
AluI	AGCT	6 cut(s)	66, 241, 392, 494, 695, 740
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	1085
AlwI	GGATC	2 cut(s)	427, 851
AoxI	GGCC	2 cut(s)	105, 235
ApeKI	GCWGC	1 cut(s)	668
ApoI	RAATTY	4 cut(s)	116, 333, 546, 606
Asp700I	GAANNNNTTC	2 cut(s)	86, 188
AspS9I	GGNCC	1 cut(s)	964
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	190, 1016
AvaII	GGWCC	1 cut(s)	964
BanII	GRGCYC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	798, 832
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	1085
BfaI	CTAG	2 cut(s)	497, 639
BfmI	CTRYAG	2 cut(s)	666, 1122
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	669
BlsI	GCNGC	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	377, 530
Bme18I	GGWCC	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	964
BmrFI	CCNGG	2 cut(s)	377, 530
BmsI	GCATC	8 cut(s)	48, 115, 436, 877, 912, 984, 1047, 1099
BpmI	CTGGAG	2 cut(s)	82, 681
BpuMI	CCSGG	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	926
BsaJI	CCNNGG	5 cut(s)	375, 376, 529, 981, 1137
Bse1I	ACTGG	2 cut(s)	774, 861
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	5 cut(s)	375, 376, 529, 981, 1137
BseGI	GGATG	5 cut(s)	103, 130, 539, 892, 1114
BseJI	GATNNNNATC	1 cut(s)	926
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	49, 1056
BseNI	ACTGG	2 cut(s)	774, 861
BseRI	GAGGAG	1 cut(s)	799
BseXI	GCAGC	1 cut(s)	680
BshFI	GGCC	2 cut(s)	107, 237
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	91, 529
BslFI	GGGAC	1 cut(s)	1032
BsmAI	GTCTC	1 cut(s)	1085
BsmFI	GGGAC	1 cut(s)	1032
BsmI	GAATGC	2 cut(s)	486, 805
BsnI	GGCC	2 cut(s)	107, 237
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	419, 643, 843, 850
Bsp19I	CCATGG	1 cut(s)	1137
BspACI	CCGC	1 cut(s)	967
BspANI	GGCC	2 cut(s)	107, 237
BspCNI	CTCAG	2 cut(s)	48, 1057
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	427, 851
BspQI	GCTCTTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	774, 861
BssECI	CCNNGG	5 cut(s)	375, 376, 529, 981, 1137
BssMI	GATC	4 cut(s)	419, 643, 843, 850
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	2 cut(s)	981, 1137
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	75, 178, 1038
Bst6I	CTCTTC	2 cut(s)	904, 1098
BstAPI	GCANNNNNTGC	1 cut(s)	1118
BstC8I	GCNNGC	2 cut(s)	239, 624
BstDEI	CTNAG	3 cut(s)	35, 467, 1065
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	5 cut(s)	103, 130, 539, 892, 1114
BstKTI	GATC	4 cut(s)	422, 646, 846, 853
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	4 cut(s)	419, 643, 843, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	1118
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	375, 528
BstSFI	CTRYAG	2 cut(s)	666, 1122
BstV1I	GCAGC	1 cut(s)	680
BstX2I	RGATCY	2 cut(s)	419, 843
BstYI	RGATCY	2 cut(s)	419, 843
BsuRI	GGCC	2 cut(s)	107, 237
BtgI	CCRYGG	1 cut(s)	1137
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	5 cut(s)	103, 130, 539, 892, 1114
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	239, 624
Cfr13I	GGNCC	1 cut(s)	964
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	7 cut(s)	254, 341, 409, 485, 899, 955, 1138
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	35, 467, 1065
DpnI	GATC	4 cut(s)	421, 645, 845, 852
DpnII	GATC	4 cut(s)	419, 643, 843, 850
Eam1104I	CTCTTC	2 cut(s)	904, 1098
EarI	CTCTTC	2 cut(s)	904, 1098
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	981, 1137
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	964
Eco53kI	GAGCTC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	392
EcoRI	GAATTC	2 cut(s)	116, 333
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	981, 1137
EcoT22I	ATGCAT	2 cut(s)	486, 805
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	981, 1137
FaeI	CATG	7 cut(s)	257, 344, 412, 488, 902, 958, 1141
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	1032
FatI	CATG	7 cut(s)	253, 340, 408, 484, 898, 954, 1137
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	1 cut(s)	669
FokI	GGATG	5 cut(s)	110, 137, 546, 899, 1121
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	669
FspBI	CTAG	2 cut(s)	497, 639
GluI	GCNGC	1 cut(s)	669
GsuI	CTGGAG	2 cut(s)	82, 681
HaeIII	GGCC	2 cut(s)	107, 237
HapII	CCGG	2 cut(s)	91, 529
Hin1II	CATG	7 cut(s)	257, 344, 412, 488, 902, 958, 1141
HinfI	GANTC	4 cut(s)	13, 281, 366, 1127
HpaII	CCGG	2 cut(s)	91, 529
HphI	GGTGA	2 cut(s)	190, 1016
Hpy166II	GTNNAC	1 cut(s)	964
Hpy188I	TCNGA	4 cut(s)	166, 247, 613, 648
Hpy188III	TCNNGA	3 cut(s)	61, 425, 698
Hpy8I	GTNNAC	1 cut(s)	964
HpyAV	CCTTC	3 cut(s)	846, 981, 995
HpyCH4III	ACNGT	3 cut(s)	75, 178, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1118
HpyF3I	CTNAG	3 cut(s)	35, 467, 1065
Hsp92II	CATG	7 cut(s)	257, 344, 412, 488, 902, 958, 1141
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	4 cut(s)	419, 643, 843, 850
LguI	GCTCTTC	1 cut(s)	904
LmnI	GCTCC	2 cut(s)	63, 700
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	8 cut(s)	48, 115, 436, 877, 912, 984, 1047, 1099
MaeI	CTAG	2 cut(s)	497, 639
MaeIII	GTNAC	3 cut(s)	178, 661, 765
MalI	GATC	4 cut(s)	421, 645, 845, 852
MboI	GATC	4 cut(s)	419, 643, 843, 850
MboII	GAAGA	6 cut(s)	125, 342, 921, 931, 1019, 1115
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	2 cut(s)	419, 843
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	8 cut(s)	116, 168, 333, 360, 513, 546, 606, 879
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	8 cut(s)	206, 668, 777, 780, 877, 1038, 1060, 1099
Mph1103I	ATGCAT	2 cut(s)	486, 805
MroXI	GAANNNNTTC	2 cut(s)	86, 188
MseI	TTAA	2 cut(s)	171, 564
MslI	CAYNNNNRTG	2 cut(s)	345, 959
MspI	CCGG	2 cut(s)	91, 529
MspR9I	CCNGG	2 cut(s)	377, 530
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	486, 805
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	1118
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	1137
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	4 cut(s)	419, 643, 843, 850
NlaIII	CATG	7 cut(s)	257, 344, 412, 488, 902, 958, 1141
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	486, 805
PasI	CCCWGGG	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	904
PctI	GAATGC	2 cut(s)	486, 805
PdmI	GAANNNNTTC	2 cut(s)	86, 188
PfeI	GAWTC	3 cut(s)	281, 366, 1127
PkrI	GCNGC	1 cut(s)	670
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	964
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	2 cut(s)	419, 843
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	345, 959
SacI	GAGCTC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	904
SaqAI	TTAA	2 cut(s)	171, 564
SatI	GCNGC	1 cut(s)	669
Sau3AI	GATC	4 cut(s)	419, 643, 843, 850
Sau96I	GGNCC	1 cut(s)	964
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	377, 530
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	8 cut(s)	48, 115, 436, 877, 912, 984, 1047, 1099
SfcI	CTRYAG	2 cut(s)	666, 1122
SinI	GGWCC	1 cut(s)	964
SmiMI	CAYNNNNRTG	2 cut(s)	345, 959
Sse9I	AATT	8 cut(s)	116, 168, 333, 360, 513, 546, 606, 879
SsiI	CCGC	1 cut(s)	967
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	497, 639
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	2 cut(s)	375, 528
StyI	CCWWGG	2 cut(s)	981, 1137
TaaI	ACNGT	3 cut(s)	75, 178, 1038
TaqI	TCGA	3 cut(s)	426, 818, 974
TasI	AATT	8 cut(s)	116, 168, 333, 360, 513, 546, 606, 879
TfiI	GAWTC	3 cut(s)	281, 366, 1127
Tru1I	TTAA	2 cut(s)	171, 564
Tru9I	TTAA	2 cut(s)	171, 564
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	668
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	6 cut(s)	147, 295, 326, 327, 397, 1026
VpaK11BI	GGWCC	1 cut(s)	964
XapI	RAATTY	4 cut(s)	116, 333, 546, 606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmnI	GAANNNNTTC	2 cut(s)	86, 188
XspI	CTAG	2 cut(s)	497, 639
Zsp2I	ATGCAT	2 cut(s)	486, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.