Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Reverse (-)

26218245 .. 26220743

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTGGGGAGACACCGTGTTCTGCGTGAACCCATGATTGACCGGCGTGGCTACCCTCTTGATGGACCGTATGGTCGAGGCCCTCCTATGCCTCGGCAGGTGCCACATCCTGCAATGTTGGAGGAAGAACTTGAAATGCAGCATGCTGAAATCCGGAGGCTCTTAGCTGATAATCGGAGGCTGGTTGAGGACAGGATGGCATTGCAGCATGATCTTGGTGCTGCGAAGGAAGAAATTCATCGCATGAATGTTGCCTTTTCTGCTATTCGCGCTGAAGAAGAACTGCAATCCAGGGAGCTCTTTGAGAAGGCGAGAAGATTGGAAGCTGATCTTCGGGCAACCGAGCCATTGAAAAACGAGGCTAAGCAACTGCGTGGTGAAGTTCAGAAGCTGAATGGCATCAGGAAGGAACTTTCCACACAAGTTCAGACTCTCACACAGGACCTGTCAAAGTTGCAATCTGATAATCAACAGATTCCTTTGCTAAAATCTGAGATTGATGGTCTGCGCCAGGAGCTTATGCATGCTAGAAACACAGTTGATTATGAAAAGAAGGCAAATATTGAGCTTATGAAACAGAGACAAGCGATGGAGAATAACCTAGTTTCTATGGCACGTGAGGTTGAGAAACTTCGTGCAGAACTTGCTAGAATCGATGGTAGACCGTGGGGTGCAGGTGGACAATATGGGATGAGTTTCAGCAGCCCAGATGGGGGCTTTCCTGCTCCATATGGAGATGGATATGGGATGCACATGGGTATGCCTAATAATGGATCGATGTATGGGGCAGGCCCAGCTTCGTGGGGAGGTTCGGAAAAGCCTCGCATGGCTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.68

Weight (kDa)

8.73

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	88, 665
AasI	GACNNNNNNGTC	1 cut(s)	72
Acc36I	ACCTGC	2 cut(s)	88, 665
AccB1I	GGYRCC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	153
AclWI	GGATC	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	294
AcvI	CACGTG	1 cut(s)	617
AfiI	CCNNNNNNNGG	4 cut(s)	62, 712, 713, 770
AgsI	TTSAA	2 cut(s)	134, 352
AjnI	CCWGG	2 cut(s)	290, 510
AluBI	AGCT	7 cut(s)	167, 298, 326, 391, 517, 568, 797
AluI	AGCT	7 cut(s)	167, 298, 326, 391, 517, 568, 797
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	4, 574
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	2 cut(s)	391, 445
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	2 cut(s)	79, 790
ApeKI	GCWGC	4 cut(s)	139, 205, 221, 702
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	272, 510
AspS9I	GGNCC	4 cut(s)	65, 80, 442, 791
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	65, 442
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	151, 208, 217, 714
BccI	CCATC	7 cut(s)	56, 190, 494, 583, 650, 704, 731
BciT130I	CCWGG	2 cut(s)	292, 512
BcoDI	GTCTC	2 cut(s)	4, 574
BfaI	CTAG	3 cut(s)	528, 602, 648
BfuAI	ACCTGC	2 cut(s)	88, 665
BisI	GCNGC	4 cut(s)	140, 206, 222, 703
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	4 cut(s)	141, 207, 223, 704
Bme1390I	CCNGG	2 cut(s)	292, 512
Bme18I	GGWCC	2 cut(s)	65, 442
BmgT120I	GGNCC	4 cut(s)	65, 80, 442, 791
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	292, 512
BmsI	GCATC	2 cut(s)	408, 738
Bpu1102I	GCTNAGC	1 cut(s)	363
Bsa29I	ATCGAT	2 cut(s)	654, 776
BsaAI	YACGTR	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	92, 291, 665
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 712, 713, 770
Bse118I	RCCGGY	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	120, 200
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	292, 512
BseCI	ATCGAT	2 cut(s)	654, 776
BseDI	CCNNGG	3 cut(s)	92, 291, 665
BseGI	GGATG	4 cut(s)	106, 201, 696, 753
BseLI	CCNNNNNNNGG	4 cut(s)	62, 712, 713, 770
BseMI	GCAATG	2 cut(s)	120, 200
BseMII	CTCAG	1 cut(s)	483
BseXI	GCAGC	4 cut(s)	151, 208, 217, 714
BseYI	CCCAGC	1 cut(s)	793
BsgI	GTGCAG	2 cut(s)	657, 693
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	81, 792
BshNI	GGYRCC	1 cut(s)	100
BshVI	ATCGAT	2 cut(s)	654, 776
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	43, 154
BslI	CCNNNNNNNGG	4 cut(s)	62, 712, 713, 770
BsmAI	GTCTC	2 cut(s)	4, 574
BsnI	GGCC	2 cut(s)	81, 792
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	211, 328, 773
Bsp1720I	GCTNAGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	81, 792
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	2 cut(s)	654, 776
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	2 cut(s)	88, 665
BspPI	GGATC	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	120, 200
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	92, 291, 665
BssMI	GATC	3 cut(s)	211, 328, 773
Bst2UI	CCWGG	2 cut(s)	292, 512
Bst4CI	ACNGT	4 cut(s)	17, 69, 538, 666
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	144, 525, 790
BstDEI	CTNAG	3 cut(s)	163, 363, 492
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	4 cut(s)	106, 201, 696, 753
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	272, 510
BstKTI	GATC	3 cut(s)	214, 331, 776
BstMAI	GTCTC	2 cut(s)	4, 574
BstMBI	GATC	3 cut(s)	211, 328, 773
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 269, 514, 644, 794
BstNI	CCWGG	2 cut(s)	292, 512
BstNSI	RCATGY	2 cut(s)	146, 527
BstSCI	CCNGG	2 cut(s)	290, 510
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	151, 208, 217, 714
BstXI	CCANNNNNNTGG	1 cut(s)	801
Bsu15I	ATCGAT	2 cut(s)	654, 776
BsuRI	GGCC	2 cut(s)	81, 792
BsuTUI	ATCGAT	2 cut(s)	654, 776
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	2 cut(s)	224, 602
BtsCI	GGATG	4 cut(s)	106, 201, 696, 753
BveI	ACCTGC	2 cut(s)	88, 665
Cac8I	GCNNGC	3 cut(s)	144, 525, 790
CaiI	CAGNNNCTG	2 cut(s)	391, 445
CfoI	GCGC	2 cut(s)	272, 510
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	4 cut(s)	65, 80, 442, 791
ClaI	ATCGAT	2 cut(s)	654, 776
CviAII	CATG	7 cut(s)	34, 143, 209, 244, 524, 754, 826
DdeI	CTNAG	3 cut(s)	163, 363, 492
DpnI	GATC	3 cut(s)	213, 330, 775
DpnII	GATC	3 cut(s)	211, 328, 773
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	65, 442
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	294
Eco72I	CACGTG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	80, 442
EcoRII	CCWGG	2 cut(s)	290, 510
EcoT22I	ATGCAT	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	7 cut(s)	37, 146, 212, 247, 527, 757, 829
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	7 cut(s)	33, 142, 208, 243, 523, 753, 825
FauNDI	CATATG	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	140, 206, 222, 703
FokI	GGATG	4 cut(s)	93, 208, 703, 760
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	4 cut(s)	140, 206, 222, 703
FspBI	CTAG	3 cut(s)	528, 602, 648
GlaI	GCGC	2 cut(s)	271, 509
GluI	GCNGC	4 cut(s)	140, 206, 222, 703
GsaI	CCCAGC	1 cut(s)	797
HaeIII	GGCC	2 cut(s)	81, 792
HapII	CCGG	2 cut(s)	43, 154
HhaI	GCGC	2 cut(s)	272, 510
Hin1II	CATG	7 cut(s)	37, 146, 212, 247, 527, 757, 829
Hin6I	GCGC	2 cut(s)	270, 508
HinP1I	GCGC	2 cut(s)	270, 508
HinfI	GANTC	3 cut(s)	430, 475, 651
HpaII	CCGG	2 cut(s)	43, 154
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	29, 662, 680
Hpy188I	TCNGA	6 cut(s)	177, 387, 429, 463, 493, 814
Hpy188III	TCNNGA	3 cut(s)	59, 154, 403
Hpy8I	GTNNAC	3 cut(s)	29, 662, 680
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	4 cut(s)	220, 301, 400, 547
HpyCH4III	ACNGT	4 cut(s)	17, 69, 538, 666
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	9 cut(s)	113, 139, 205, 286, 457, 523, 638, 674, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 269, 514, 644, 794
HpyF3I	CTNAG	3 cut(s)	163, 363, 492
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	7 cut(s)	37, 146, 212, 247, 527, 757, 829
HspAI	GCGC	2 cut(s)	270, 508
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	211, 328, 773
LmnI	GCTCC	3 cut(s)	295, 514, 730
Lsp1109I	GCAGC	4 cut(s)	151, 208, 217, 714
LweI	GCATC	2 cut(s)	408, 738
MaeI	CTAG	3 cut(s)	528, 602, 648
MaeII	ACGT	1 cut(s)	616
MalI	GATC	3 cut(s)	213, 330, 775
MboI	GATC	3 cut(s)	211, 328, 773
MboII	GAAGA	6 cut(s)	137, 242, 287, 290, 323, 327
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	525
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	2 cut(s)	43, 154
MspR9I	CCNGG	2 cut(s)	292, 512
MvaI	CCWGG	2 cut(s)	292, 512
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	260, 269, 514, 644, 794
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	3 cut(s)	211, 328, 773
NlaIII	CATG	7 cut(s)	37, 146, 212, 247, 527, 757, 829
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	2 cut(s)	146, 527
PaeI	GCATGC	2 cut(s)	146, 527
PaqCI	CACCTGC	2 cut(s)	88, 665
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	475, 651
PkrI	GCNGC	4 cut(s)	141, 207, 223, 704
PleI	GAGTC	1 cut(s)	424
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	290, 510
PspCI	CACGTG	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	793
PspGI	CCWGG	2 cut(s)	290, 510
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	4 cut(s)	65, 80, 442, 791
PspPPI	RGGWCCY	1 cut(s)	442
PstNI	CAGNNNCTG	2 cut(s)	391, 445
RseI	CAYNNNNRTG	1 cut(s)	758
SacI	GAGCTC	1 cut(s)	300
SatI	GCNGC	4 cut(s)	140, 206, 222, 703
Sau3AI	GATC	3 cut(s)	211, 328, 773
Sau96I	GGNCC	4 cut(s)	65, 80, 442, 791
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	292, 512
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	408, 738
SinI	GGWCC	2 cut(s)	65, 442
SmiMI	CAYNNNNRTG	1 cut(s)	758
SphI	GCATGC	2 cut(s)	146, 527
Sse9I	AATT	1 cut(s)	234
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	3 cut(s)	528, 602, 648
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	290, 510
TaaI	ACNGT	4 cut(s)	17, 69, 538, 666
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	3 cut(s)	76, 654, 776
TasI	AATT	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	475, 651
TseI	GCWGC	4 cut(s)	139, 205, 221, 702
TspDTI	ATGAA	4 cut(s)	227, 260, 561, 587
VpaK11BI	GGWCC	2 cut(s)	65, 442
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	2 cut(s)	146, 527
XmiI	GTMKAC	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	528, 602, 648
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.