Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Forward (+)

3593063 .. 3600309

Gene Structure 7247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G051000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCAGGGAGACATCGTGTTCCACGTGAAGCGATTAATGACCGGCGCGGCTACCCTCTTGAAGGACCTTTTGGTCGAGGTCCTCCAATGCGACCACTTCCTCATCCTGCAGTGTTGGAGGAAGAACTTGAAATGCAACATGCTGAAATTCGAAGACTCTTGGCTGATAACCGGAGGCTGGTTGAGGACCGAATGACATTGCAGCGTGAGCTTGGTGCTGCCAAGGAGGAAATTCATAGGATGAATGTTGCCTTTTCAGATATTCGTGCTGAAGAAGAATTGCAATCAAGGGAGCTCTTTGAGAAAGGCAGGAAATTGGAGGCTGATCTTCGGGCCACTGAGCCCTTGAAAAATGAGGCTAAACAACTTCGTTCTGAAGTTCAGAAGCTGACTAATGTTAGGAAGGAACTTTCCACTCAAGTTCAGACCCTCACACAGGACGTTGCGAGGTTGCAATCTGATAATCAACAGATTCCTCTACTAAGGGCTGACATTGATGGTCTGCATCAGGAGCTTATGCATGCTAGAAATGCAATCGATTATGAGAAGAAGGCGAATGTTGAGCTTATGGAACAAAGACAGGCAATGGAGAAGAACCTAGTTTCTATGGCTCGTGAAGTTGAGAAACTACGCGCAGATCTTGCTAGGACAGATGGTAGACCATGGGGTGCAGGTGGACAATATGGGATTAATTTCAGCAGCCCAGAGGTTGCTTTTCCTGCTGCATATGGAGATGGCTATGGGATGCGCATGGGTGTTGCTGATAAAGGGCCTATGTATGGGCCAGGTCCAGCTTCATGGGGAGGACCTGAAAAGCCTCGCATGACTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.61

Weight (kDa)

7.96

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
AasI	GACNNNNNNGTC	1 cut(s)	72
Acc16I	TGCGCA	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	658
AccII	CGCG	2 cut(s)	48, 633
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	147, 231
AcuI	CTGAAG	2 cut(s)	291, 396
AcvI	CACGTG	1 cut(s)	26
AfiI	CCNNNNNNNGG	4 cut(s)	62, 178, 436, 779
AgsI	TTSAA	3 cut(s)	62, 131, 349
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	6 cut(s)	211, 295, 388, 514, 565, 794
AluI	AGCT	6 cut(s)	211, 295, 388, 514, 565, 794
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	4
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	333, 770, 782
ApeKI	GCWGC	4 cut(s)	202, 218, 699, 722
ApoI	RAATTY	2 cut(s)	147, 231
AseI	ATTAAT	2 cut(s)	36, 690
AspLEI	GCGC	3 cut(s)	48, 635, 750
AspS9I	GGNCC	8 cut(s)	65, 80, 187, 333, 770, 782, 788, 806
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	5 cut(s)	65, 80, 187, 788, 806
BanII	GRGCYC	2 cut(s)	297, 345
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	205, 214, 709, 711
BccI	CCATC	3 cut(s)	491, 647, 728
BciT130I	CCWGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	3 cut(s)	525, 599, 645
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	5 cut(s)	49, 203, 219, 700, 723
BlsI	GCNGC	5 cut(s)	50, 204, 220, 701, 724
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	5 cut(s)	65, 80, 187, 788, 806
BmgT120I	GGNCC	8 cut(s)	65, 80, 187, 333, 770, 782, 788, 806
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	2 cut(s)	514, 735
BpiI	GAAGAC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	222, 662
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 178, 436, 779
Bse118I	RCCGGY	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	197, 591
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	222, 662
BseGI	GGATG	3 cut(s)	103, 246, 750
BseLI	CCNNNNNNNGG	4 cut(s)	62, 178, 436, 779
BseMI	GCAATG	2 cut(s)	197, 591
BseMII	CTCAG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	205, 214, 709, 711
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	2 cut(s)	48, 633
BshFI	GGCC	3 cut(s)	335, 772, 784
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	43, 172
BslI	CCNNNNNNNGG	4 cut(s)	62, 178, 436, 779
BsmAI	GTCTC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	335, 772, 784
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	297, 345
Bsp143I	GATC	2 cut(s)	325, 637
Bsp19I	CCATGG	1 cut(s)	662
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	335, 772, 784
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	537
BspFNI	CGCG	2 cut(s)	48, 633
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	662
BspT104I	TTCGAA	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	197, 591
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	222, 662
BssMI	GATC	2 cut(s)	325, 637
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	222, 662
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	786
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	339, 482
BstDSI	CCRYGG	1 cut(s)	662
BstENI	CCTNNNNNAGG	2 cut(s)	60, 434
BstF5I	GGATG	3 cut(s)	103, 246, 750
BstFNI	CGCG	2 cut(s)	48, 633
BstHHI	GCGC	3 cut(s)	48, 635, 750
BstKTI	GATC	2 cut(s)	328, 640
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	325, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 511, 530, 641, 719
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	2 cut(s)	143, 524
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	48, 633
BstV1I	GCAGC	4 cut(s)	205, 214, 709, 711
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	335, 772, 784
BsuTUI	ATCGAT	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	3 cut(s)	103, 246, 750
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 336
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	3 cut(s)	48, 635, 750
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	8 cut(s)	65, 80, 187, 333, 770, 782, 788, 806
ClaI	ATCGAT	1 cut(s)	537
CviAII	CATG	6 cut(s)	140, 521, 663, 751, 798, 823
DdeI	CTNAG	2 cut(s)	339, 482
DpnI	GATC	2 cut(s)	327, 639
DpnII	GATC	2 cut(s)	325, 637
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	222, 662
Eco24I	GRGCYC	2 cut(s)	297, 345
Eco47I	GGWCC	5 cut(s)	65, 80, 187, 788, 806
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	291, 396
Eco72I	CACGTG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	2 cut(s)	60, 434
EcoO109I	RGGNCCY	4 cut(s)	65, 80, 770, 806
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	2 cut(s)	222, 662
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	297, 345
ErhI	CCWWGG	2 cut(s)	222, 662
FaeI	CATG	6 cut(s)	143, 524, 666, 754, 801, 826
FatI	CATG	6 cut(s)	139, 520, 662, 750, 797, 822
FauNDI	CATATG	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	5 cut(s)	49, 203, 219, 700, 723
FokI	GGATG	3 cut(s)	90, 253, 757
FriOI	GRGCYC	2 cut(s)	297, 345
Fsp4HI	GCNGC	5 cut(s)	49, 203, 219, 700, 723
FspAI	RTGCGCAY	1 cut(s)	749
FspBI	CTAG	3 cut(s)	525, 599, 645
FspI	TGCGCA	1 cut(s)	749
GlaI	GCGC	3 cut(s)	47, 634, 749
GluI	GCNGC	5 cut(s)	49, 203, 219, 700, 723
HaeIII	GGCC	3 cut(s)	335, 772, 784
HapII	CCGG	2 cut(s)	43, 172
HhaI	GCGC	3 cut(s)	48, 635, 750
Hin1II	CATG	6 cut(s)	143, 524, 666, 754, 801, 826
Hin6I	GCGC	3 cut(s)	46, 633, 748
HinP1I	GCGC	3 cut(s)	46, 633, 748
HinfI	GANTC	3 cut(s)	156, 472, 826
HpaII	CCGG	2 cut(s)	43, 172
Hpy166II	GTNNAC	2 cut(s)	659, 677
Hpy188I	TCNGA	5 cut(s)	259, 376, 384, 426, 460
Hpy188III	TCNNGA	3 cut(s)	59, 509, 614
Hpy8I	GTNNAC	2 cut(s)	659, 677
Hpy99I	CGWCG	1 cut(s)	834
HpyAV	CCTTC	3 cut(s)	56, 397, 544
HpyCH4IV	ACGT	2 cut(s)	25, 441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 511, 530, 641, 719
HpyF3I	CTNAG	2 cut(s)	339, 482
HpySE526I	ACGT	2 cut(s)	25, 441
Hsp92II	CATG	6 cut(s)	143, 524, 666, 754, 801, 826
HspAI	GCGC	3 cut(s)	46, 633, 748
Kzo9I	GATC	2 cut(s)	325, 637
LmnI	GCTCC	2 cut(s)	292, 511
Lsp1109I	GCAGC	4 cut(s)	205, 214, 709, 711
LweI	GCATC	2 cut(s)	514, 735
MaeI	CTAG	3 cut(s)	525, 599, 645
MaeII	ACGT	2 cut(s)	25, 441
MalI	GATC	2 cut(s)	327, 639
MboI	GATC	2 cut(s)	325, 637
MboII	GAAGA	7 cut(s)	134, 165, 284, 287, 320, 559, 604
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	297, 345
MluCI	AATT	5 cut(s)	147, 231, 278, 314, 691
MlyI	GAGTC	2 cut(s)	150, 820
MmeI	TCCRAC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	522
MseI	TTAA	2 cut(s)	36, 690
MspI	CCGG	2 cut(s)	43, 172
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	48, 633
MwoI	GCNNNNNNNGC	5 cut(s)	208, 511, 530, 641, 719
NcoI	CCATGG	1 cut(s)	662
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	2 cut(s)	325, 637
NlaIII	CATG	6 cut(s)	143, 524, 666, 754, 801, 826
NsbI	TGCGCA	1 cut(s)	749
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	2 cut(s)	143, 524
NspV	TTCGAA	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 826
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	50, 204, 220, 701, 724
PleI	GAGTC	2 cut(s)	150, 820
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	150, 820
Ppu21I	YACGTR	1 cut(s)	26
PpuMI	RGGWCCY	3 cut(s)	65, 80, 806
PshBI	ATTAAT	2 cut(s)	36, 690
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	3 cut(s)	65, 80, 806
Psp6I	CCWGG	1 cut(s)	784
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	784
PspPI	GGNCC	8 cut(s)	65, 80, 187, 333, 770, 782, 788, 806
PspPPI	RGGWCCY	3 cut(s)	65, 80, 806
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	36, 690
SatI	GCNGC	5 cut(s)	49, 203, 219, 700, 723
Sau3AI	GATC	2 cut(s)	325, 637
Sau96I	GGNCC	8 cut(s)	65, 80, 187, 333, 770, 782, 788, 806
SchI	GAGTC	2 cut(s)	150, 820
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	297, 345
SfaNI	GCATC	2 cut(s)	514, 735
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	5 cut(s)	65, 80, 187, 788, 806
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	5 cut(s)	147, 231, 278, 314, 691
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	3 cut(s)	525, 599, 645
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	2 cut(s)	222, 662
TaiI	ACGT	2 cut(s)	28, 444
TaqI	TCGA	3 cut(s)	76, 151, 537
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	5 cut(s)	147, 231, 278, 314, 691
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	2 cut(s)	36, 690
Tru9I	TTAA	2 cut(s)	36, 690
TscAI	CASTG	2 cut(s)	117, 343
TseI	GCWGC	4 cut(s)	202, 218, 699, 722
TspDTI	ATGAA	3 cut(s)	224, 257, 786
TspRI	CASTG	2 cut(s)	117, 343
VpaK11BI	GGWCC	5 cut(s)	65, 80, 187, 788, 806
VspI	ATTAAT	2 cut(s)	36, 690
XagI	CCTNNNNNAGG	2 cut(s)	60, 434
XapI	RAATTY	2 cut(s)	147, 231
XceI	RCATGY	2 cut(s)	143, 524
XmiI	GTMKAC	1 cut(s)	658
XspI	CTAG	3 cut(s)	525, 599, 645
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.