Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Forward (+)

47988201 .. 47988458

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAACCCTCTTAACGGGCTCGCCCATCCCTCGCTGATTACATGCACCCACTCCAGATCAATCTTGGTCAAGCTCACCTTCGGCAGCGACCCGGCCTCCAGGACCTTGGTCCCACGCTCGCTTTCCAGCACCACGAGATCGACAAGAACCCCGTCGTCCGGCTCAATCAGCGAGCTCTTGATCGTGGATCGAGCCAGCTCATGCATTGTTGTGGTTTTCTGTTTATACACGAGGGACAATAATGAGTCAGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.25

Weight (kDa)

8.66

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	14, 158
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	73, 175, 198
AluI	AGCT	3 cut(s)	73, 175, 198
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	102, 109
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	102, 109
BanII	GRGCYC	2 cut(s)	21, 177
BauI	CACGAG	2 cut(s)	133, 229
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	92, 100
Bme18I	GGWCC	2 cut(s)	102, 109
BmgT120I	GGNCC	2 cut(s)	102, 109
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	92, 100
BoxI	GACNNNNGTC	1 cut(s)	107
BpmI	CTGGAG	2 cut(s)	37, 82
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 158
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	14, 158
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	92, 159
BslFI	GGGAC	2 cut(s)	95, 248
BslI	CCNNNNNNNGG	2 cut(s)	14, 158
BsmFI	GGGAC	2 cut(s)	95, 248
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	21, 177
Bsp143I	GATC	4 cut(s)	56, 137, 180, 187
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	56, 137, 180, 187
BssSI	CACGAG	2 cut(s)	133, 229
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	2 cut(s)	133, 229
Bst2UI	CCWGG	1 cut(s)	100
BstC8I	GCNNGC	4 cut(s)	21, 119, 173, 196
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	4 cut(s)	59, 140, 183, 190
BstMBI	GATC	4 cut(s)	56, 137, 180, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	45
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	90, 98
BstV1I	GCAGC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	4 cut(s)	21, 119, 173, 196
Cfr13I	GGNCC	2 cut(s)	102, 109
CviAII	CATG	2 cut(s)	42, 201
CviJI	RGCY	7 cut(s)	19, 73, 95, 162, 175, 194, 198
CviKI_1	RGCY	7 cut(s)	19, 73, 95, 162, 175, 194, 198
DpnI	GATC	4 cut(s)	58, 139, 182, 189
DpnII	GATC	4 cut(s)	56, 137, 180, 187
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	21, 177
Eco47I	GGWCC	2 cut(s)	102, 109
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	21, 177
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	45, 204
FaiI	YATR	3 cut(s)	43, 202, 226
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	2 cut(s)	95, 248
FatI	CATG	2 cut(s)	41, 200
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	2 cut(s)	21, 177
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	2 cut(s)	37, 82
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	92, 159
Hin1II	CATG	2 cut(s)	45, 204
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	92, 159
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	54, 178
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	45, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	45, 204
Kzo9I	GATC	4 cut(s)	56, 137, 180, 187
LpnPI	CCDG	7 cut(s)	67, 85, 105, 112, 139, 172, 208
Lsp1109I	GCAGC	1 cut(s)	96
MalI	GATC	4 cut(s)	58, 139, 182, 189
MboI	GATC	4 cut(s)	56, 137, 180, 187
MhlI	GDGCHC	2 cut(s)	21, 177
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	18, 40, 106, 225
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	2 cut(s)	92, 159
MspR9I	CCNGG	2 cut(s)	92, 100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	56, 137, 180, 187
NlaIII	CATG	2 cut(s)	45, 204
NlaIV	GGNNCC	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	102, 109
PspPPI	RGGWCCY	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	4 cut(s)	56, 137, 180, 187
Sau96I	GGNCC	2 cut(s)	102, 109
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	92, 100
SduI	GDGCHC	2 cut(s)	21, 177
SetI	ASST	5 cut(s)	75, 80, 107, 177, 200
SinI	GGWCC	2 cut(s)	102, 109
SmiMI	CAYNNNNRTG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	90, 98
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	2 cut(s)	140, 190
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	102, 109
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.