Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Reverse (-)

38056206 .. 38062817

Gene Structure 6612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAACTGGATGGGGGAAATTTCAGTAAGAGACGGTGGTTGACGGTGGATGGGAGGATGGATCCCAGTTTGGTAAGTCATCTCTCATCGGAATCTGGCATTGATGGGGCCCCTGATTTAATGGAGGAATTGATGAGAGACGAGTCTCCTTCAGGGGATTTGAATTCAAAGGTTGAGATTGTGTTAAATAAGGTGGAGTTAATAGGGGTTGGGACAGCTGGAGCATGTACTAGCGACATTATTGCTCCTGTGTCGAAAAAGGGTGGCCTGGATGGATCTATTGCTTTGGATGTTGGGCTGAATAAGGAAGGGAAGGGCCTTGATGATAAGCTGAATGGCGTTAGGAAGGAGCTTTCCACGCAAGTGCAGACTCTCACACAGGACCTTGTAAAGTTGGAATCTGATAATCAACAGATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATGCTAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAACGGAGAAGAACCTAGTTTCTATGGCTCGTGAAGTTGAGAAACTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGGGTGCAGCGCGTACTAGTGCACCTGCTGTCGCTTCTACTGTGGCTCACACTCTCAAGAAAGAGGATGCTCGCGAAGTCCGTCAACCTCAGAGACCTAAACCCATGCAATCTGCAGGGAGTGATCTCTTGACCAGGGAAGCATATAATTTGAGTATTCCAACTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

27.97

Weight (kDa)

5.51

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	2 cut(s)	616, 678
AclWI	GGATC	3 cut(s)	56, 69, 283
AcsI	RAATTY	2 cut(s)	19, 163
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	229, 619
AgsI	TTSAA	2 cut(s)	163, 168
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	267, 450, 737
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	5 cut(s)	218, 331, 352, 457, 505
AluI	AGCT	5 cut(s)	218, 331, 352, 457, 505
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	5 cut(s)	25, 132, 150, 511, 691
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	56, 69, 283
AoxI	GGCC	3 cut(s)	108, 265, 316
ApaI	GGGCCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	19, 163
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	4 cut(s)	108, 109, 316, 382
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	2 cut(s)	112, 628
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	7 cut(s)	5, 44, 52, 98, 266, 434, 587
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	3 cut(s)	269, 452, 739
BcoDI	GTCTC	5 cut(s)	25, 132, 150, 511, 691
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	5 cut(s)	231, 468, 539, 585, 621
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	3 cut(s)	269, 452, 739
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	4 cut(s)	108, 109, 316, 382
BmiI	GGNNCC	4 cut(s)	63, 109, 110, 111
BmrFI	CCNGG	3 cut(s)	269, 452, 739
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	602, 738
Bse1I	ACTGG	2 cut(s)	12, 66
BseBI	CCWGG	3 cut(s)	269, 452, 739
BseDI	CCNNGG	2 cut(s)	602, 738
BseGI	GGATG	6 cut(s)	16, 55, 63, 277, 295, 676
BseMII	CTCAG	2 cut(s)	423, 707
BseNI	ACTGG	2 cut(s)	12, 66
BseSI	GKGCMC	2 cut(s)	112, 628
BseXI	GCAGC	1 cut(s)	623
BsgI	GTGCAG	4 cut(s)	386, 431, 594, 630
Bsh1236I	CGCG	2 cut(s)	616, 678
BshFI	GGCC	3 cut(s)	110, 267, 318
BsiHKAI	GWGCWC	1 cut(s)	628
BslFI	GGGAC	1 cut(s)	226
BsmAI	GTCTC	5 cut(s)	25, 132, 150, 511, 691
BsmBI	CGTCTC	2 cut(s)	25, 132
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	110, 267, 318
Bso31I	GGTCTC	1 cut(s)	691
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	112, 628
Bsp143I	GATC	3 cut(s)	61, 275, 727
Bsp68I	TCGCGA	1 cut(s)	678
BspANI	GGCC	3 cut(s)	110, 267, 318
BspCNI	CTCAG	2 cut(s)	424, 706
BspFNI	CGCG	2 cut(s)	616, 678
BspLI	GGNNCC	4 cut(s)	63, 109, 110, 111
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	3 cut(s)	56, 69, 283
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	12, 66
BssECI	CCNNGG	2 cut(s)	602, 738
BssMI	GATC	3 cut(s)	61, 275, 727
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	3 cut(s)	269, 452, 739
Bst4CI	ACNGT	4 cut(s)	36, 46, 603, 646
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	465, 676
BstDEI	CTNAG	2 cut(s)	432, 693
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	6 cut(s)	16, 55, 63, 277, 295, 676
BstFNI	CGCG	2 cut(s)	616, 678
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	3 cut(s)	64, 278, 730
BstMAI	GTCTC	5 cut(s)	25, 132, 150, 511, 691
BstMBI	GATC	3 cut(s)	61, 275, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 454, 581
BstNI	CCWGG	3 cut(s)	269, 452, 739
BstNSI	RCATGY	2 cut(s)	228, 467
BstSCI	CCNGG	3 cut(s)	267, 450, 737
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	2 cut(s)	112, 628
BstUI	CGCG	2 cut(s)	616, 678
BstV1I	GCAGC	1 cut(s)	623
BstX2I	RGATCY	2 cut(s)	61, 275
BstYI	RGATCY	2 cut(s)	61, 275
BsuRI	GGCC	3 cut(s)	110, 267, 318
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	6 cut(s)	16, 55, 63, 277, 295, 676
BtuMI	TCGCGA	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	2 cut(s)	465, 676
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	4 cut(s)	108, 109, 316, 382
Csp6I	GTAC	2 cut(s)	228, 618
CviAII	CATG	3 cut(s)	225, 464, 709
CviQI	GTAC	2 cut(s)	228, 618
DdeI	CTNAG	2 cut(s)	432, 693
DpnI	GATC	3 cut(s)	63, 277, 729
DpnII	GATC	3 cut(s)	61, 275, 727
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	4 cut(s)	108, 109, 316, 382
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	267, 450, 737
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	112
Esp3I	CGTCTC	2 cut(s)	25, 132
FaeI	CATG	3 cut(s)	228, 467, 712
FaiI	YATR	9 cut(s)	226, 461, 465, 483, 509, 548, 710, 748, 750
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	224, 463, 708
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	6 cut(s)	23, 62, 70, 284, 302, 683
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	5 cut(s)	231, 468, 539, 585, 621
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	110, 267, 318
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	3 cut(s)	228, 467, 712
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	2 cut(s)	42, 689
HindII	GTYRAC	2 cut(s)	42, 689
HinfI	GANTC	5 cut(s)	92, 143, 370, 398, 415
Hpy166II	GTNNAC	4 cut(s)	42, 599, 626, 689
Hpy188I	TCNGA	4 cut(s)	91, 403, 433, 696
Hpy188III	TCNNGA	4 cut(s)	554, 661, 677, 733
Hpy8I	GTNNAC	4 cut(s)	42, 599, 626, 689
HpyAV	CCTTC	5 cut(s)	159, 302, 307, 340, 484
HpyCH4III	ACNGT	4 cut(s)	36, 46, 603, 646
HpyCH4V	TGCA	9 cut(s)	367, 448, 463, 473, 575, 611, 626, 712, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 454, 581
HpyF3I	CTNAG	2 cut(s)	432, 693
Hsp92II	CATG	3 cut(s)	228, 467, 712
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	3 cut(s)	61, 275, 727
LmnI	GCTCC	4 cut(s)	221, 250, 349, 454
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	5 cut(s)	231, 468, 539, 585, 621
MalI	GATC	3 cut(s)	63, 277, 729
MboI	GATC	3 cut(s)	61, 275, 727
MboII	GAAGA	1 cut(s)	544
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	2 cut(s)	61, 275
MhlI	GDGCHC	2 cut(s)	112, 628
MluCI	AATT	5 cut(s)	19, 128, 163, 474, 751
MlyI	GAGTC	2 cut(s)	152, 364
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	48, 118, 661, 702
Mph1103I	ATGCAT	1 cut(s)	465
MseI	TTAA	4 cut(s)	119, 185, 200, 772
MslI	CAYNNNNRTG	2 cut(s)	362, 468
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	269, 452, 739
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	3 cut(s)	269, 452, 739
MvnI	CGCG	2 cut(s)	616, 678
MwoI	GCNNNNNNNGC	3 cut(s)	358, 454, 581
NdeII	GATC	3 cut(s)	61, 275, 727
NlaIII	CATG	3 cut(s)	228, 467, 712
NlaIV	GGNNCC	4 cut(s)	63, 109, 110, 111
NruI	TCGCGA	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	465
NspI	RCATGY	2 cut(s)	228, 467
OliI	CACNNNNGTG	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	92, 398, 415
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	151, 364
PpsI	GAGTC	2 cut(s)	151, 364
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	3 cut(s)	267, 450, 737
PspGI	CCWGG	3 cut(s)	267, 450, 737
PspN4I	GGNNCC	4 cut(s)	63, 109, 110, 111
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	4 cut(s)	108, 109, 316, 382
PspPPI	RGGWCCY	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	61, 275
PvuII	CAGCTG	1 cut(s)	218
RruI	TCGCGA	1 cut(s)	678
RsaI	GTAC	2 cut(s)	229, 619
RsaNI	GTAC	2 cut(s)	228, 618
RseI	CAYNNNNRTG	2 cut(s)	362, 468
SaqAI	TTAA	4 cut(s)	119, 185, 200, 772
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	3 cut(s)	61, 275, 727
Sau96I	GGNCC	4 cut(s)	108, 109, 316, 382
SchI	GAGTC	2 cut(s)	152, 364
ScrFI	CCNGG	3 cut(s)	269, 452, 739
SduI	GDGCHC	2 cut(s)	112, 628
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	362, 468
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	620
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	5 cut(s)	19, 128, 163, 474, 751
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	5 cut(s)	231, 468, 539, 585, 621
StyD4I	CCNGG	3 cut(s)	267, 450, 737
TaaI	ACNGT	4 cut(s)	36, 46, 603, 646
TaqI	TCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	19, 128, 163, 474, 751
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	92, 398, 415
Tru1I	TTAA	4 cut(s)	119, 185, 200, 772
Tru9I	TTAA	4 cut(s)	119, 185, 200, 772
TseI	GCWGC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	17, 498
TspGWI	ACGGA	2 cut(s)	542, 674
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	19, 163
XceI	RCATGY	2 cut(s)	228, 467
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	5 cut(s)	231, 468, 539, 585, 621
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.