Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Reverse (-)

63671916 .. 63684600

Gene Structure 12685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG429300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTCAATCTGGAGGGTTGTTTTTTTGGTCTAAAGTTTTGTGGGTTTTCAGGGAAAACATCTCTGATGGCAGGGAGGCACCGCATTCCGCGTGAAGCCATGATTGACCGGCGTGGCTACCCTCTTGAAGGACCTTATGGTAGAGCCCCTCCTGTGCCTCGGCAGCTGCCCCATCCTGCATTGTTGGAGGAAGAACTTGAAATGCAGCATGCTGAGATTCGGAGGCTCTTAGCTGATAACCGGAGGCTGGTGGAGGACCGAATGGCATTGCAGCATGATCTTGGCGCTGCCAAGGAGGAAATTCATCGCATGAATGTTGCCTTTTCTGATATTCACGCCGAGGAAGAACTGCAGTCGAGGGAGCTCTTTGAGAAAGCAAGAAAATTGGAAGCTGATCTTCGGGGAGCTGAGCCGTTTAAAAATGAGGCTAAACAACTACGCAGTGAAGTTCAGAAGCTGAATGGTGTTAGGAAGGAACTTTCCACACAAGTGCAGACTCTCACACAGGACCTTGTAAAGTTGCAAGCTGATAATCAACAGATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATGCTAGAAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAATGGAGAATAACCTAGTTTCTATGGCTCGTGAAGTTGAGAAGCTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGGGTGCAGGTGGACAATACGGGATGAGTTTCAGCAGCCCAGATGGAAGCTTTCCTGCTCCATATGGAGATGGATATGGGATGCATGTGGGTATGCCTGATAAAGGACTGATGTATGGGCAAGGCCCAGGCCCAGGCCCAACTTTGTGGGGAGGTTCGGAAAAGCTGCGCATGCCTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

34.42

Weight (kDa)

6.53

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc16I	TGCGCA	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	727
AccII	CGCG	1 cut(s)	91
AciI	CCGC	2 cut(s)	82, 89
AcsI	RAATTY	1 cut(s)	300
AfiI	CCNNNNNNNGG	4 cut(s)	128, 247, 836, 866
AgsI	TTSAA	2 cut(s)	128, 200
AjnI	CCWGG	3 cut(s)	576, 859, 865
AleI	CACNNNNGTG	1 cut(s)	488
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	640
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	3 cut(s)	856, 862, 868
ApeKI	GCWGC	7 cut(s)	163, 166, 205, 271, 287, 768, 898
ApoI	RAATTY	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	287, 903
AspS9I	GGNCC	6 cut(s)	131, 256, 508, 857, 863, 869
AvaII	GGWCC	3 cut(s)	131, 256, 508
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	2 cut(s)	148, 366
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	7 cut(s)	153, 175, 217, 274, 283, 780, 885
BccI	CCATC	6 cut(s)	61, 180, 560, 716, 770, 797
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	3 cut(s)	578, 861, 867
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	3 cut(s)	594, 668, 714
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	7 cut(s)	164, 167, 206, 272, 288, 769, 899
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	7 cut(s)	165, 168, 207, 273, 289, 770, 900
Bme1390I	CCNGG	3 cut(s)	578, 861, 867
Bme18I	GGWCC	3 cut(s)	131, 256, 508
BmgT120I	GGNCC	6 cut(s)	131, 256, 508, 857, 863, 869
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	578, 861, 867
BmsI	GCATC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	6 cut(s)	158, 291, 339, 731, 859, 865
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 247, 836, 866
Bse118I	RCCGGY	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	266, 660
BseBI	CCWGG	3 cut(s)	578, 861, 867
BseDI	CCNNGG	6 cut(s)	158, 291, 339, 731, 859, 865
BseGI	GGATG	3 cut(s)	172, 762, 819
BseLI	CCNNNNNNNGG	4 cut(s)	128, 247, 836, 866
BseMI	GCAATG	2 cut(s)	266, 660
BseMII	CTCAG	3 cut(s)	204, 399, 549
BseXI	GCAGC	7 cut(s)	153, 175, 217, 274, 283, 780, 885
BsgI	GTGCAG	4 cut(s)	512, 557, 723, 759
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	858, 864, 870
BshNI	GGYRCC	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	109, 241
BslI	CCNNNNNNNGG	4 cut(s)	128, 247, 836, 866
BsmAI	GTCTC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	3 cut(s)	858, 864, 870
Bsp1286I	GDGCHC	2 cut(s)	148, 366
Bsp143I	GATC	2 cut(s)	277, 394
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	82, 89
BspANI	GGCC	3 cut(s)	858, 864, 870
BspCNI	CTCAG	3 cut(s)	205, 400, 550
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	266, 660
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	6 cut(s)	158, 291, 339, 731, 859, 865
BssMI	GATC	2 cut(s)	277, 394
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	3 cut(s)	578, 861, 867
Bst4CI	ACNGT	1 cut(s)	732
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	4 cut(s)	210, 525, 591, 905
BstDEI	CTNAG	4 cut(s)	213, 229, 408, 558
BstDSI	CCRYGG	1 cut(s)	731
BstENI	CCTNNNNNAGG	2 cut(s)	126, 834
BstF5I	GGATG	3 cut(s)	172, 762, 819
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	287, 903
BstKTI	GATC	2 cut(s)	280, 397
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	2 cut(s)	277, 394
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 580, 599, 710, 904
BstNI	CCWGG	3 cut(s)	578, 861, 867
BstNSI	RCATGY	4 cut(s)	212, 593, 821, 907
BstSCI	CCNGG	3 cut(s)	576, 859, 865
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	7 cut(s)	153, 175, 217, 274, 283, 780, 885
BstXI	CCANNNNNNTGG	1 cut(s)	879
BsuRI	GGCC	3 cut(s)	858, 864, 870
BtgI	CCRYGG	1 cut(s)	731
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	172, 762, 819
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	4 cut(s)	210, 525, 591, 905
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	287, 903
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	6 cut(s)	131, 256, 508, 857, 863, 869
CviAII	CATG	7 cut(s)	100, 209, 275, 310, 590, 818, 904
DdeI	CTNAG	4 cut(s)	213, 229, 408, 558
DpnI	GATC	2 cut(s)	279, 396
DpnII	GATC	2 cut(s)	277, 394
DraI	TTTAAA	1 cut(s)	418
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	2 cut(s)	148, 366
Eco47I	GGWCC	3 cut(s)	131, 256, 508
Eco53kI	GAGCTC	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	2 cut(s)	126, 834
EcoO109I	RGGNCCY	2 cut(s)	131, 508
EcoRII	CCWGG	3 cut(s)	576, 859, 865
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	2 cut(s)	591, 819
EcoT38I	GRGCYC	2 cut(s)	148, 366
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	7 cut(s)	103, 212, 278, 313, 593, 821, 907
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	7 cut(s)	99, 208, 274, 309, 589, 817, 903
FauNDI	CATATG	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	727
Fnu4HI	GCNGC	7 cut(s)	164, 167, 206, 272, 288, 769, 899
FokI	GGATG	3 cut(s)	159, 769, 826
FriOI	GRGCYC	2 cut(s)	148, 366
Fsp4HI	GCNGC	7 cut(s)	164, 167, 206, 272, 288, 769, 899
FspBI	CTAG	3 cut(s)	594, 668, 714
FspI	TGCGCA	1 cut(s)	902
GlaI	GCGC	2 cut(s)	286, 902
GluI	GCNGC	7 cut(s)	164, 167, 206, 272, 288, 769, 899
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	858, 864, 870
HapII	CCGG	2 cut(s)	109, 241
HhaI	GCGC	2 cut(s)	287, 903
Hin1II	CATG	7 cut(s)	103, 212, 278, 313, 593, 821, 907
Hin6I	GCGC	2 cut(s)	285, 901
HinP1I	GCGC	2 cut(s)	285, 901
HindIII	AAGCTT	2 cut(s)	695, 781
HinfI	GANTC	3 cut(s)	217, 496, 541
HpaII	CCGG	2 cut(s)	109, 241
Hpy166II	GTNNAC	2 cut(s)	728, 746
Hpy188I	TCNGA	6 cut(s)	66, 222, 328, 453, 559, 892
Hpy188III	TCNNGA	3 cut(s)	11, 125, 683
Hpy8I	GTNNAC	2 cut(s)	728, 746
Hpy99I	CGWCG	1 cut(s)	915
HpyAV	CCTTC	3 cut(s)	122, 466, 613
HpyCH4III	ACNGT	1 cut(s)	732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 580, 599, 710, 904
HpyF3I	CTNAG	4 cut(s)	213, 229, 408, 558
Hsp92II	CATG	7 cut(s)	103, 212, 278, 313, 593, 821, 907
HspAI	GCGC	2 cut(s)	285, 901
Kzo9I	GATC	2 cut(s)	277, 394
LmnI	GCTCC	4 cut(s)	361, 404, 580, 796
Lsp1109I	GCAGC	7 cut(s)	153, 175, 217, 274, 283, 780, 885
LweI	GCATC	1 cut(s)	804
MaeI	CTAG	3 cut(s)	594, 668, 714
MalI	GATC	2 cut(s)	279, 396
MboI	GATC	2 cut(s)	277, 394
MboII	GAAGA	3 cut(s)	203, 356, 389
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	148, 366
MluCI	AATT	3 cut(s)	300, 383, 603
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	165
Mph1103I	ATGCAT	2 cut(s)	591, 819
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	2 cut(s)	109, 241
MspR9I	CCNGG	3 cut(s)	578, 861, 867
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	3 cut(s)	578, 861, 867
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	163, 580, 599, 710, 904
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	2 cut(s)	277, 394
NlaIII	CATG	7 cut(s)	103, 212, 278, 313, 593, 821, 907
NlaIV	GGNNCC	1 cut(s)	80
NmeAIII	GCCGAG	2 cut(s)	139, 364
NsbI	TGCGCA	1 cut(s)	902
NsiI	ATGCAT	2 cut(s)	591, 819
NspI	RCATGY	4 cut(s)	212, 593, 821, 907
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	3 cut(s)	212, 593, 907
PaqCI	CACCTGC	1 cut(s)	731
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	217, 541
PkrI	GCNGC	7 cut(s)	165, 168, 207, 273, 289, 770, 900
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	2 cut(s)	131, 508
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	2 cut(s)	131, 508
Psp6I	CCWGG	3 cut(s)	576, 859, 865
PspGI	CCWGG	3 cut(s)	576, 859, 865
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	6 cut(s)	131, 256, 508, 857, 863, 869
PspPPI	RGGWCCY	2 cut(s)	131, 508
PstI	CTGCAG	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	7 cut(s)	164, 167, 206, 272, 288, 769, 899
Sau3AI	GATC	2 cut(s)	277, 394
Sau96I	GGNCC	6 cut(s)	131, 256, 508, 857, 863, 869
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	3 cut(s)	578, 861, 867
SduI	GDGCHC	2 cut(s)	148, 366
SfaNI	GCATC	1 cut(s)	804
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	131, 256, 508
SmiMI	CAYNNNNRTG	1 cut(s)	488
SphI	GCATGC	3 cut(s)	212, 593, 907
Sse9I	AATT	3 cut(s)	300, 383, 603
SsiI	CCGC	2 cut(s)	82, 89
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	594, 668, 714
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	576, 859, 865
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	356
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	300, 383, 603
TfiI	GAWTC	2 cut(s)	217, 541
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	7 cut(s)	163, 166, 205, 271, 287, 768, 898
TspDTI	ATGAA	3 cut(s)	293, 326, 627
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	131, 256, 508
XagI	CCTNNNNNAGG	2 cut(s)	126, 834
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	4 cut(s)	212, 593, 821, 907
XmiI	GTMKAC	1 cut(s)	727
XspI	CTAG	3 cut(s)	594, 668, 714
Zsp2I	ATGCAT	2 cut(s)	591, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.