Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Reverse (-)

62078119 .. 62092429

Gene Structure 14311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG438500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAGGGAGGCACCGCATTCCGCGTGAAGCCATGATTGACCGGCGTGGCTACCCTCTTGAAGGACCTTATGGTAGAGCCCCTCCTGTGCCCCGGCAGCTGCCCCATCCTGCATTGTTGGAGGAAGAACTTGAAATGCAGCATGCTGAGATTCGGAGGCTCTTAGCTGATAACCGGAGGCTGGTGGAGGACCGAATGGCATTGCAGCATGATCTTGGTGCTGCCAAGGAGGAAATTCATCGCATGAATGTTGCCTTTTCTGATATTCGCGCCGAGGAAGAACTGCAGTCAAGGGAGCTCTTTGAGAAAGCAAGAAAATTGGAAGCTGATCTTCGGGGAGCTGAGCCATTTAAAAATGAGGCTAAACAACTACGCGGTGAAATTCAGAAGCTGAATGGTGTTAGGAAGGAACTTTCCACACAAGTGCAGACTCTCACACAGGACCTCGTAAAGTTGCAAGCTGATAATCAACAGATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATGCTAGAAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAATGGAGAATAACCTAGTTTCTATGGCTCGTGAAGTTGAGAAACTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGAGTGCAGGTGGACAATACGGGATGAGTTTCAGCAGCCCAGATGGAAGCTTTCCTGCTCCATATGGAGATGGATATGGGATGCATATGGGTATGCCTGATAAAGGACCGATGTATGGGCAAGGCCCAGGCCCAGGCCCAACTTTGTGGGGAGGTTCGGAAAAGCTGCGCATGCCTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

32.09

Weight (kDa)

6.48

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	665
Acc16I	TGCGCA	1 cut(s)	836
Acc36I	ACCTGC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	3 cut(s)	25, 270, 375
AciI	CCGC	3 cut(s)	16, 23, 375
AcsI	RAATTY	2 cut(s)	234, 381
AfiI	CCNNNNNNNGG	5 cut(s)	62, 181, 770, 782, 800
AgsI	TTSAA	2 cut(s)	62, 134
AjnI	CCWGG	3 cut(s)	510, 793, 799
AleI	CACNNNNGTG	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	790, 796, 802
ApeKI	GCWGC	7 cut(s)	97, 100, 139, 205, 221, 702, 832
ApoI	RAATTY	2 cut(s)	234, 381
AspLEI	GCGC	2 cut(s)	272, 837
AspS9I	GGNCC	7 cut(s)	65, 190, 442, 773, 791, 797, 803
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	4 cut(s)	65, 190, 442, 773
BaeGI	GKGCMC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	82, 300
BauI	CACGAG	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 819
BccI	CCATC	5 cut(s)	114, 494, 650, 704, 731
BciT130I	CCWGG	3 cut(s)	512, 795, 801
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	528, 602, 648
BfmI	CTRYAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	665
BisI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 833
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	7 cut(s)	99, 102, 141, 207, 223, 704, 834
Bme1390I	CCNGG	4 cut(s)	94, 512, 795, 801
Bme18I	GGWCC	4 cut(s)	65, 190, 442, 773
BmgT120I	GGNCC	7 cut(s)	65, 190, 442, 773, 791, 797, 803
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	4 cut(s)	94, 512, 795, 801
BmsI	GCATC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	6 cut(s)	92, 225, 273, 665, 793, 799
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	661, 691
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 181, 770, 782, 800
Bse118I	RCCGGY	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	200, 594
BseBI	CCWGG	3 cut(s)	512, 795, 801
BseDI	CCNNGG	6 cut(s)	92, 225, 273, 665, 793, 799
BseGI	GGATG	3 cut(s)	106, 696, 753
BseLI	CCNNNNNNNGG	5 cut(s)	62, 181, 770, 782, 800
BseMI	GCAATG	2 cut(s)	200, 594
BseMII	CTCAG	3 cut(s)	138, 333, 483
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 819
BsgI	GTGCAG	4 cut(s)	446, 491, 657, 693
Bsh1236I	CGCG	3 cut(s)	25, 270, 375
BshFI	GGCC	3 cut(s)	792, 798, 804
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	43, 94, 175
BslI	CCNNNNNNNGG	5 cut(s)	62, 181, 770, 782, 800
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	792, 798, 804
Bsp1286I	GDGCHC	3 cut(s)	82, 93, 300
Bsp143I	GATC	2 cut(s)	211, 328
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	16, 23, 375
BspANI	GGCC	3 cut(s)	792, 798, 804
BspCNI	CTCAG	3 cut(s)	139, 334, 484
BspFNI	CGCG	3 cut(s)	25, 270, 375
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	200, 594
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	6 cut(s)	92, 225, 273, 665, 793, 799
BssMI	GATC	2 cut(s)	211, 328
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	3 cut(s)	512, 795, 801
Bst4CI	ACNGT	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	144, 459, 525, 839
BstDEI	CTNAG	4 cut(s)	147, 163, 342, 492
BstDSI	CCRYGG	1 cut(s)	665
BstENI	CCTNNNNNAGG	2 cut(s)	60, 768
BstF5I	GGATG	3 cut(s)	106, 696, 753
BstFNI	CGCG	3 cut(s)	25, 270, 375
BstHHI	GCGC	2 cut(s)	272, 837
BstKTI	GATC	2 cut(s)	214, 331
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	2 cut(s)	211, 328
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 838
BstNI	CCWGG	3 cut(s)	512, 795, 801
BstNSI	RCATGY	3 cut(s)	146, 527, 841
BstSCI	CCNGG	4 cut(s)	92, 510, 793, 799
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	93
BstUI	CGCG	3 cut(s)	25, 270, 375
BstV1I	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 819
BstXI	CCANNNNNNTGG	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	792, 798, 804
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	106, 696, 753
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	4 cut(s)	144, 459, 525, 839
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	2 cut(s)	272, 837
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	7 cut(s)	65, 190, 442, 773, 791, 797, 803
CviAII	CATG	6 cut(s)	34, 143, 209, 244, 524, 838
DdeI	CTNAG	4 cut(s)	147, 163, 342, 492
DpnI	GATC	2 cut(s)	213, 330
DpnII	GATC	2 cut(s)	211, 328
DraI	TTTAAA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	82, 300
Eco47I	GGWCC	4 cut(s)	65, 190, 442, 773
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	2 cut(s)	60, 768
EcoO109I	RGGNCCY	2 cut(s)	65, 442
EcoRII	CCWGG	3 cut(s)	510, 793, 799
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	2 cut(s)	525, 753
EcoT38I	GRGCYC	2 cut(s)	82, 300
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	6 cut(s)	37, 146, 212, 247, 527, 841
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	6 cut(s)	33, 142, 208, 243, 523, 837
FauNDI	CATATG	2 cut(s)	730, 753
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 833
FokI	GGATG	3 cut(s)	93, 703, 760
FriOI	GRGCYC	2 cut(s)	82, 300
Fsp4HI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 833
FspBI	CTAG	3 cut(s)	528, 602, 648
FspI	TGCGCA	1 cut(s)	836
GlaI	GCGC	2 cut(s)	271, 836
GluI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 833
HaeIII	GGCC	3 cut(s)	792, 798, 804
HapII	CCGG	3 cut(s)	43, 94, 175
HhaI	GCGC	2 cut(s)	272, 837
Hin1II	CATG	6 cut(s)	37, 146, 212, 247, 527, 841
Hin6I	GCGC	2 cut(s)	270, 835
HinP1I	GCGC	2 cut(s)	270, 835
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	3 cut(s)	151, 430, 475
HpaII	CCGG	3 cut(s)	43, 94, 175
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	662, 680
Hpy188I	TCNGA	5 cut(s)	156, 262, 387, 493, 826
Hpy188III	TCNNGA	2 cut(s)	59, 617
Hpy8I	GTNNAC	2 cut(s)	662, 680
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	3 cut(s)	56, 400, 547
HpyCH4III	ACNGT	1 cut(s)	666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 838
HpyF3I	CTNAG	4 cut(s)	147, 163, 342, 492
Hsp92II	CATG	6 cut(s)	37, 146, 212, 247, 527, 841
HspAI	GCGC	2 cut(s)	270, 835
Kzo9I	GATC	2 cut(s)	211, 328
LmnI	GCTCC	4 cut(s)	295, 338, 514, 730
Lsp1109I	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 819
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	3 cut(s)	528, 602, 648
MalI	GATC	2 cut(s)	213, 330
MboI	GATC	2 cut(s)	211, 328
MboII	GAAGA	3 cut(s)	137, 290, 323
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	3 cut(s)	82, 93, 300
MluCI	AATT	4 cut(s)	234, 317, 381, 537
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	525, 753
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	3 cut(s)	43, 94, 175
MspR9I	CCNGG	4 cut(s)	94, 512, 795, 801
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	3 cut(s)	512, 795, 801
MvnI	CGCG	3 cut(s)	25, 270, 375
MwoI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 838
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	2 cut(s)	730, 753
NdeII	GATC	2 cut(s)	211, 328
NlaIII	CATG	6 cut(s)	37, 146, 212, 247, 527, 841
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	836
NsiI	ATGCAT	2 cut(s)	525, 753
NspI	RCATGY	3 cut(s)	146, 527, 841
OliI	CACNNNNGTG	1 cut(s)	422
PaeI	GCATGC	3 cut(s)	146, 527, 841
PaqCI	CACCTGC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	151, 475
PkrI	GCNGC	7 cut(s)	99, 102, 141, 207, 223, 704, 834
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	2 cut(s)	65, 442
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	2 cut(s)	65, 442
Psp6I	CCWGG	3 cut(s)	510, 793, 799
PspGI	CCWGG	3 cut(s)	510, 793, 799
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	7 cut(s)	65, 190, 442, 773, 791, 797, 803
PspPPI	RGGWCCY	2 cut(s)	65, 442
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 833
Sau3AI	GATC	2 cut(s)	211, 328
Sau96I	GGNCC	7 cut(s)	65, 190, 442, 773, 791, 797, 803
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	4 cut(s)	94, 512, 795, 801
SduI	GDGCHC	3 cut(s)	82, 93, 300
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	4 cut(s)	65, 190, 442, 773
SmiMI	CAYNNNNRTG	1 cut(s)	422
SphI	GCATGC	3 cut(s)	146, 527, 841
Sse9I	AATT	4 cut(s)	234, 317, 381, 537
SsiI	CCGC	3 cut(s)	16, 23, 375
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	3 cut(s)	528, 602, 648
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	4 cut(s)	92, 510, 793, 799
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	666
TaqII	GACCGA	2 cut(s)	207, 790
TasI	AATT	4 cut(s)	234, 317, 381, 537
TfiI	GAWTC	2 cut(s)	151, 475
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	7 cut(s)	97, 100, 139, 205, 221, 702, 832
TspDTI	ATGAA	3 cut(s)	227, 260, 561
VpaK11BI	GGWCC	4 cut(s)	65, 190, 442, 773
XagI	CCTNNNNNAGG	2 cut(s)	60, 768
XapI	RAATTY	2 cut(s)	234, 381
XceI	RCATGY	3 cut(s)	146, 527, 841
XmiI	GTMKAC	1 cut(s)	661
XspI	CTAG	3 cut(s)	528, 602, 648
Zsp2I	ATGCAT	2 cut(s)	525, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.