Rw5G039600

FLX-like 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003143
Physical Location & Seq
Forward (+)
69852379 .. 69853732
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039600.1

Sequence Viewer

Length: 375 bp
ATGGTTGGTTCAAAGCATATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATACTAGAAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAATGGAGAATAACCTAGTTTCTATGGTTTGTGAAGTTGATAAACTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGGGTGCAGTTTTTGGTGGCAAAAAAGCTCGTACTAGTGCACCTGCTGTCGCTCCTACTGTGGCTCACGCTCTCAAGAAAGAGGGTGCTCCCGAAGTCTGTCAACCTCAGAGACCTAAACCCATGCAATCTGCAGGGAGTGATCTCTTGACCAGGGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.6

Weight (kDa)

8.62

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 205
AfaI GTAC 1 cut(s) 244
AgsI TTSAA 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 2 cut(s) 54, 362
AluBI AGCT 3 cut(s) 61, 112, 239
AluI AGCT 3 cut(s) 61, 112, 239
Alw21I GWGCWC 2 cut(s) 253, 301
Alw26I GTCTC 2 cut(s) 118, 316
Alw44I GTGCAC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 253, 301
BccI CCATC 2 cut(s) 38, 194
BciT130I CCWGG 2 cut(s) 56, 364
BcoDI GTCTC 2 cut(s) 118, 316
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 4 cut(s) 72, 146, 192, 246
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 56, 364
BmrFI CCNGG 2 cut(s) 56, 364
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 209, 363
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 2 cut(s) 56, 364
BseDI CCNNGG 2 cut(s) 209, 363
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 27, 332
BseSI GKGCMC 1 cut(s) 253
BsgI GTGCAG 3 cut(s) 35, 201, 237
BsiHKAI GWGCWC 2 cut(s) 253, 301
BsmAI GTCTC 2 cut(s) 118, 316
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 253, 301
Bsp143I GATC 1 cut(s) 352
BspCNI CTCAG 2 cut(s) 28, 331
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 209, 363
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 2 cut(s) 56, 364
Bst4CI ACNGT 2 cut(s) 210, 271
BstAPI GCANNNNNTGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 36, 318
BstDSI CCRYGG 1 cut(s) 209
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 118, 316
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 58, 188
BstNI CCWGG 2 cut(s) 56, 364
BstSCI CCNGG 2 cut(s) 54, 362
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 243
CviAII CATG 1 cut(s) 334
CviJI RGCY 4 cut(s) 61, 112, 239, 275
CviKI_1 RGCY 4 cut(s) 61, 112, 239, 275
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 36, 318
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 54, 362
EcoT22I ATGCAT 1 cut(s) 69
FaeI CATG 1 cut(s) 337
FaiI YATR 8 cut(s) 18, 65, 69, 90, 116, 155, 335, 373
FatI CATG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 205
FspBI CTAG 4 cut(s) 72, 146, 192, 246
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
Hpy166II GTNNAC 3 cut(s) 206, 251, 314
Hpy188I TCNGA 2 cut(s) 37, 321
Hpy188III TCNNGA 3 cut(s) 286, 302, 358
Hpy8I GTNNAC 3 cut(s) 206, 251, 314
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 210, 271
HpyCH4V TGCA 8 cut(s) 52, 67, 80, 182, 218, 251, 337, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 188
HpyF3I CTNAG 2 cut(s) 36, 318
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 58, 268, 304
LpnPI CCDG 6 cut(s) 41, 68, 113, 267, 330, 349
MaeI CTAG 4 cut(s) 72, 146, 192, 246
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 253, 301
MluCI AATT 1 cut(s) 81
MnlI CCTC 2 cut(s) 286, 327
Mph1103I ATGCAT 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 56, 364
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 2 cut(s) 56, 364
MwoI GCNNNNNNNGC 2 cut(s) 58, 188
NdeII GATC 1 cut(s) 352
NlaIII CATG 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 54, 362
PspGI CCWGG 2 cut(s) 54, 362
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 56, 364
SduI GDGCHC 2 cut(s) 253, 301
SetI ASST 7 cut(s) 63, 114, 147, 241, 256, 319, 328
SfcI CTRYAG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 1 cut(s) 81
SspI AATATT 1 cut(s) 106
SspMI CTAG 4 cut(s) 72, 146, 192, 246
StyD4I CCNGG 2 cut(s) 54, 362
TaaI ACNGT 2 cut(s) 210, 271
TasI AATT 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 105
VneI GTGCAC 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 205
XspI CTAG 4 cut(s) 72, 146, 192, 246
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.