Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Forward (+)

15594109 .. 15595791

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAATGACCGGCGTGGTTATCCTTTTGAAGGACCTTATGGCCGAGGTCCTCCTATGCGGTCTCTTCCCCATCCTGCAATGTTGGAGGAAGAACTTGAAATGCAACATGCGGAAATTCGGAGACTCTTGGCTGATAACCGGAGGCTGGTTGAGGACCGGATGGTGTTGCAGCATGAGCTTGGTGCTGCCAAGGAAGAAATTCATCGGATGAATGTTGCCTTTTCAGATATTCGTGCTGAAGAAGAAATGAAATCAAGGGAGCTCTATGAGAAAAGTAGGAAATTGGAGGCTGACCTACAGGCAACTGAGCCCTTGAAAAATGAGGCTAAGCAACTTCGCTCTGAAGTTCAGAAGCTGAATACTGTTAGGAAGGAACTTGCCACACAAGTTCAGACCCTCACGCAGGACCTTGCGAGGTTGCAGTCTGACAATAAGCAGATTCCTATGCTGAGGACTGAGATTGATGGTCTGCATCAGGAGCTTATGTTTTGTCGAAATGCGGTCGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAGCAAAGACAGGCAATGGAGAAGAACCTAGTTTCTATGGCACGTGAAGTTGAAAAACTACGCGCAGAACTTTCTAGGGCTGATGGTAGACCATGGGGTACAGGTGGACAATATGGTATGAATTTCACCAGCCCAGAAGGGGCTTTTCCTGCTGCATATGGAGATGGATATGGGATGCACACGGGTGCTGCCGACAAAGGGCCTATGTATGGCCTGGGTCCAGCTTCATGGGGAGGTTCTGAAAAGCCTCGCATGACTCGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.5

Weight (kDa)

6.36

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	600
AciI	CCGC	3 cut(s)	58, 110, 500
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	3 cut(s)	114, 198, 658
AcuI	CTGAAG	2 cut(s)	258, 363
AcvI	CACGTG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	6 cut(s)	29, 145, 403, 676, 735, 746
AgsI	TTSAA	4 cut(s)	29, 98, 316, 590
AjnI	CCWGG	1 cut(s)	750
AleI	CACNNNNGTG	1 cut(s)	720
AluBI	AGCT	6 cut(s)	178, 262, 355, 481, 532, 761
AluI	AGCT	6 cut(s)	178, 262, 355, 481, 532, 761
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	66, 115
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	40, 737, 748
ApeKI	GCWGC	4 cut(s)	169, 185, 689, 725
ApoI	RAATTY	3 cut(s)	114, 198, 658
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	6 cut(s)	32, 47, 154, 406, 737, 755
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	5 cut(s)	32, 47, 154, 406, 755
BanII	GRGCYC	2 cut(s)	264, 312
BbrPI	CACGTG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	4 cut(s)	172, 181, 676, 712
BccI	CCATC	5 cut(s)	78, 154, 458, 614, 695
BciT130I	CCWGG	1 cut(s)	752
BcoDI	GTCTC	2 cut(s)	66, 115
BfaI	CTAG	2 cut(s)	566, 612
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	4 cut(s)	170, 186, 690, 726
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	4 cut(s)	171, 187, 691, 727
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	5 cut(s)	32, 47, 154, 406, 755
BmgT120I	GGNCC	6 cut(s)	32, 47, 154, 406, 737, 755
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	2 cut(s)	481, 702
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	43, 189, 629, 751
BsaWI	WCCGGW	2 cut(s)	138, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 145, 403, 676, 735, 746
Bse118I	RCCGGY	1 cut(s)	9
Bse3DI	GCAATG	2 cut(s)	84, 558
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	4 cut(s)	43, 189, 629, 751
BseGI	GGATG	4 cut(s)	70, 165, 213, 717
BseLI	CCNNNNNNNGG	6 cut(s)	29, 145, 403, 676, 735, 746
BseMI	GCAATG	2 cut(s)	84, 558
BseMII	CTCAG	3 cut(s)	297, 440, 447
BseXI	GCAGC	4 cut(s)	172, 181, 676, 712
Bsh1236I	CGCG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	3 cut(s)	42, 739, 750
BsiEI	CGRYCG	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	10, 139, 157
BslI	CCNNNNNNNGG	6 cut(s)	29, 145, 403, 676, 735, 746
BsmAI	GTCTC	2 cut(s)	66, 115
BsnI	GGCC	3 cut(s)	42, 739, 750
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	264, 312
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	3 cut(s)	58, 110, 500
BspANI	GGCC	3 cut(s)	42, 739, 750
BspCNI	CTCAG	3 cut(s)	298, 441, 448
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	84, 558
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	4 cut(s)	43, 189, 629, 751
BssT1I	CCWWGG	2 cut(s)	189, 629
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	581
BstDEI	CTNAG	4 cut(s)	306, 327, 449, 456
BstDSI	CCRYGG	1 cut(s)	629
BstENI	CCTNNNNNAGG	2 cut(s)	27, 401
BstF5I	GGATG	4 cut(s)	70, 165, 213, 717
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	602
BstMAI	GTCTC	2 cut(s)	66, 115
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 478, 538, 686
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	172, 181, 676, 712
BstXI	CCANNNNNNTGG	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	42, 739, 750
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	4 cut(s)	70, 165, 213, 717
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	6 cut(s)	32, 47, 154, 406, 737, 755
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	5 cut(s)	107, 173, 630, 765, 790
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	4 cut(s)	306, 327, 449, 456
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	189, 629
Eco24I	GRGCYC	2 cut(s)	264, 312
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	5 cut(s)	32, 47, 154, 406, 755
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	258, 363
Eco72I	CACGTG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	2 cut(s)	27, 401
EcoO109I	RGGNCCY	4 cut(s)	32, 47, 406, 737
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	189, 629
EcoT38I	GRGCYC	2 cut(s)	264, 312
ErhI	CCWWGG	2 cut(s)	189, 629
FaeI	CATG	5 cut(s)	110, 176, 633, 768, 793
FatI	CATG	5 cut(s)	106, 172, 629, 764, 789
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	170, 186, 690, 726
FokI	GGATG	4 cut(s)	57, 172, 220, 724
FriOI	GRGCYC	2 cut(s)	264, 312
Fsp4HI	GCNGC	4 cut(s)	170, 186, 690, 726
FspBI	CTAG	2 cut(s)	566, 612
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	4 cut(s)	170, 186, 690, 726
HaeIII	GGCC	3 cut(s)	42, 739, 750
HapII	CCGG	3 cut(s)	10, 139, 157
HhaI	GCGC	1 cut(s)	602
Hin1II	CATG	5 cut(s)	110, 176, 633, 768, 793
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HinfI	GANTC	3 cut(s)	123, 439, 793
HpaII	CCGG	3 cut(s)	10, 139, 157
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	626, 644
Hpy188I	TCNGA	8 cut(s)	120, 207, 226, 343, 351, 393, 427, 778
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	2 cut(s)	626, 644
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	4 cut(s)	23, 364, 511, 668
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	7 cut(s)	77, 103, 169, 421, 472, 692, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 478, 538, 686
HpyF3I	CTNAG	4 cut(s)	306, 327, 449, 456
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	5 cut(s)	110, 176, 633, 768, 793
HspAI	GCGC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	259, 478, 538
Lsp1109I	GCAGC	4 cut(s)	172, 181, 676, 712
LweI	GCATC	2 cut(s)	481, 702
MaeI	CTAG	2 cut(s)	566, 612
MaeII	ACGT	1 cut(s)	580
MboII	GAAGA	6 cut(s)	56, 101, 206, 251, 254, 571
MhlI	GDGCHC	2 cut(s)	264, 312
MluCI	AATT	4 cut(s)	114, 198, 281, 658
MlyI	GAGTC	2 cut(s)	117, 787
MmeI	TCCRAC	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	720
MspI	CCGG	3 cut(s)	10, 139, 157
MspR9I	CCNGG	1 cut(s)	752
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	4 cut(s)	175, 478, 538, 686
NcoI	CCATGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	694
NlaIII	CATG	5 cut(s)	110, 176, 633, 768, 793
NlaIV	GGNNCC	1 cut(s)	756
NmeAIII	GCCGAG	1 cut(s)	68
NspI	RCATGY	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	171, 187, 691, 727
PleI	GAGTC	2 cut(s)	117, 787
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
PpsI	GAGTC	2 cut(s)	117, 787
Ppu21I	YACGTR	1 cut(s)	581
PpuMI	RGGWCCY	3 cut(s)	32, 47, 406
Psp124BI	GAGCTC	1 cut(s)	264
Psp5II	RGGWCCY	3 cut(s)	32, 47, 406
Psp6I	CCWGG	1 cut(s)	750
PspCI	CACGTG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	6 cut(s)	32, 47, 154, 406, 737, 755
PspPPI	RGGWCCY	3 cut(s)	32, 47, 406
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	264
SatI	GCNGC	4 cut(s)	170, 186, 690, 726
Sau96I	GGNCC	6 cut(s)	32, 47, 154, 406, 737, 755
SchI	GAGTC	2 cut(s)	117, 787
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	2 cut(s)	264, 312
SfaNI	GCATC	2 cut(s)	481, 702
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	5 cut(s)	32, 47, 154, 406, 755
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	4 cut(s)	114, 198, 281, 658
SsiI	CCGC	3 cut(s)	58, 110, 500
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	566, 612
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	2 cut(s)	189, 629
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	493, 504
TasI	AATT	4 cut(s)	114, 198, 281, 658
TfiI	GAWTC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	169, 185, 689, 725
TspDTI	ATGAA	7 cut(s)	17, 191, 224, 263, 525, 671, 753
VpaK11BI	GGWCC	5 cut(s)	32, 47, 154, 406, 755
XagI	CCTNNNNNAGG	2 cut(s)	27, 401
XapI	RAATTY	3 cut(s)	114, 198, 658
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	566, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.