Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032490.1

Orthogroup ID

OG0003143

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1985

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032490.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

cttttcttcaaaatttcgatccaagaacaagggaaaacatctctgatggcagggaggcaccgcattccgcgtgaagccatgattgaccggcgtggctaccctcttgaaggaccttatggtagagcccctcctgtgccccggcagctgccccatcctgcattgttggaggaagaacttgaaatgcagcatgctgagattcggaggctcttagctgataaccggaggctggtggaggaccgaatggcattgcagcatgatcttggcgctgccaaggaggaaattcatcgcatgaatgttgccttttctgatattcgcgctgaggaagaactgcagtcgagggagctctttgagaaagcaagaaaattggaagctgatcttcggggagctgagccgtttaaaaatgaggctaaacaactacgcggtgaaattcagaagctgaatggtgttaggaaggaactttccacacaagtgcagactctcacacaggacctcgtaaagttgcaatctgataatcaacagattcctttgctaaagtctgagattgatggtctgcaccaggagcttatgcatgctagaagtgcaattgattatgaaaagaaggcaaatattgagcttatggaacagagacaggcaatggagaataacctagtttctatggctcgtgaagttgagaaacttcgtgcagaacttgctagagttgatggtagacagtggagtgcaggtggacaatacgggatgagtttcagcagcccagatggaagctttcctgctccatatggagatggatatgggatgcatatgggtatgcctgataaaggaccgatgtatgggcaaggcccaggcccaggcccaactttgtggggaagttcggaaaagctgcgcatgcctcgtcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.89

Weight (kDa)

6.81

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55170
fragaria_vesca	FvH4_6g33160 FvH4_6g33160
malus_domestica	MD17G1175100.v1.1
prunus_persica	Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1 Prupe.3G051000_v2.0.a1
pyrus_communis	pycom09g11110 pycom17g18140
rosa_chinensis	RchiOBHm_Chr2g0142861 RchiOBHm_Chr2g0146461 RchiOBHm_Chr7g0199571
rosa_laevigata	RLG00000002681 RLG00000019994
rosa_multiflora	Rmu_sc0003940.1_g000005 Rmu_sc0032490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012120 Rroxscaffold_2G00102250 Rroxscaffold_2G00103290 Rroxscaffold_7G00201140
rosa_rugosa	Rorug02G0376100 Rorug02G0376200 Rorug02G0376300 Rorug02G0376400 Rorug02G0376500
rosa_samantha	Rh2AG429300 Rh2BG438500 Rh2CG414800 Rh2DG448500 Rh3CG305700 Rh5DG449800 Rh7DG182900
rosa_wichuraiana	Rw2G035090 Rw5G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc16I	TGCGCA	1 cut(s)	881
Acc36I	ACCTGC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	3 cut(s)	70, 315, 420
AciI	CCGC	3 cut(s)	61, 68, 420
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	3 cut(s)	12, 279, 426
AfiI	CCNNNNNNNGG	5 cut(s)	107, 226, 815, 827, 845
AgsI	TTSAA	3 cut(s)	10, 107, 179
AjnI	CCWGG	3 cut(s)	555, 838, 844
AleI	CACNNNNGTG	1 cut(s)	467
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	835, 841, 847
ApeKI	GCWGC	7 cut(s)	142, 145, 184, 250, 266, 747, 877
ApoI	RAATTY	3 cut(s)	12, 279, 426
AspLEI	GCGC	3 cut(s)	266, 317, 882
AspS9I	GGNCC	7 cut(s)	110, 235, 487, 818, 836, 842, 848
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	4 cut(s)	110, 235, 487, 818
BaeGI	GKGCMC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	127, 345
BauI	CACGAG	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	7 cut(s)	132, 154, 196, 253, 262, 759, 864
BccI	CCATC	6 cut(s)	40, 159, 539, 695, 749, 776
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	557, 840, 846
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	3 cut(s)	573, 647, 693
BfmI	CTRYAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	710
BisI	GCNGC	7 cut(s)	143, 146, 185, 251, 267, 748, 878
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	7 cut(s)	144, 147, 186, 252, 268, 749, 879
Bme1390I	CCNGG	4 cut(s)	139, 557, 840, 846
Bme18I	GGWCC	4 cut(s)	110, 235, 487, 818
BmgT120I	GGNCC	7 cut(s)	110, 235, 487, 818, 836, 842, 848
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	4 cut(s)	139, 557, 840, 846
BmsI	GCATC	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	4 cut(s)	137, 270, 838, 844
BsaWI	WCCGGW	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 226, 815, 827, 845
Bse118I	RCCGGY	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	245, 639
BseBI	CCWGG	3 cut(s)	557, 840, 846
BseDI	CCNNGG	4 cut(s)	137, 270, 838, 844
BseGI	GGATG	3 cut(s)	151, 741, 798
BseLI	CCNNNNNNNGG	5 cut(s)	107, 226, 815, 827, 845
BseMI	GCAATG	2 cut(s)	245, 639
BseMII	CTCAG	4 cut(s)	183, 309, 378, 528
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	7 cut(s)	132, 154, 196, 253, 262, 759, 864
BsgI	GTGCAG	4 cut(s)	491, 536, 702, 738
Bsh1236I	CGCG	3 cut(s)	70, 315, 420
BshFI	GGCC	3 cut(s)	837, 843, 849
BshNI	GGYRCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	88, 139, 220
BslI	CCNNNNNNNGG	5 cut(s)	107, 226, 815, 827, 845
BsmAI	GTCTC	1 cut(s)	619
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	837, 843, 849
Bsp1286I	GDGCHC	3 cut(s)	127, 138, 345
Bsp143I	GATC	3 cut(s)	18, 256, 373
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	61, 68, 420
BspANI	GGCC	3 cut(s)	837, 843, 849
BspCNI	CTCAG	4 cut(s)	184, 310, 379, 529
BspFNI	CGCG	3 cut(s)	70, 315, 420
BspLI	GGNNCC	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	245, 639
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	4 cut(s)	137, 270, 838, 844
BssMI	GATC	3 cut(s)	18, 256, 373
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	3 cut(s)	557, 840, 846
Bst4CI	ACNGT	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	3 cut(s)	189, 570, 884
BstDEI	CTNAG	5 cut(s)	192, 208, 318, 387, 537
BstENI	CCTNNNNNAGG	2 cut(s)	105, 813
BstF5I	GGATG	3 cut(s)	151, 741, 798
BstFNI	CGCG	3 cut(s)	70, 315, 420
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	266, 317, 882
BstKTI	GATC	3 cut(s)	21, 259, 376
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	3 cut(s)	18, 256, 373
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 559, 578, 689, 883
BstNI	CCWGG	3 cut(s)	557, 840, 846
BstNSI	RCATGY	3 cut(s)	191, 572, 886
BstSCI	CCNGG	4 cut(s)	137, 555, 838, 844
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	3 cut(s)	70, 315, 420
BstV1I	GCAGC	7 cut(s)	132, 154, 196, 253, 262, 759, 864
BstXI	CCANNNNNNTGG	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	837, 843, 849
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	151, 741, 798
BtsIMutI	CAGTG	1 cut(s)	716
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	189, 570, 884
CaiI	CAGNNNCTG	1 cut(s)	436
CfoI	GCGC	3 cut(s)	266, 317, 882
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	7 cut(s)	110, 235, 487, 818, 836, 842, 848
CviAII	CATG	6 cut(s)	79, 188, 254, 289, 569, 883
DdeI	CTNAG	5 cut(s)	192, 208, 318, 387, 537
DpnI	GATC	3 cut(s)	20, 258, 375
DpnII	GATC	3 cut(s)	18, 256, 373
DraI	TTTAAA	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	127, 345
Eco47I	GGWCC	4 cut(s)	110, 235, 487, 818
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	2 cut(s)	105, 813
EcoO109I	RGGNCCY	2 cut(s)	110, 487
EcoRII	CCWGG	3 cut(s)	555, 838, 844
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	2 cut(s)	570, 798
EcoT38I	GRGCYC	2 cut(s)	127, 345
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	6 cut(s)	82, 191, 257, 292, 572, 886
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	6 cut(s)	78, 187, 253, 288, 568, 882
FauNDI	CATATG	2 cut(s)	775, 798
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	7 cut(s)	143, 146, 185, 251, 267, 748, 878
FokI	GGATG	3 cut(s)	138, 748, 805
FriOI	GRGCYC	2 cut(s)	127, 345
Fsp4HI	GCNGC	7 cut(s)	143, 146, 185, 251, 267, 748, 878
FspBI	CTAG	3 cut(s)	573, 647, 693
FspI	TGCGCA	1 cut(s)	881
GlaI	GCGC	3 cut(s)	265, 316, 881
GluI	GCNGC	7 cut(s)	143, 146, 185, 251, 267, 748, 878
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	837, 843, 849
HapII	CCGG	3 cut(s)	88, 139, 220
HhaI	GCGC	3 cut(s)	266, 317, 882
Hin1II	CATG	6 cut(s)	82, 191, 257, 292, 572, 886
Hin6I	GCGC	3 cut(s)	264, 315, 880
HinP1I	GCGC	3 cut(s)	264, 315, 880
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	3 cut(s)	196, 475, 520
HpaII	CCGG	3 cut(s)	88, 139, 220
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	707, 725
Hpy188I	TCNGA	7 cut(s)	45, 201, 307, 432, 508, 538, 871
Hpy188III	TCNNGA	2 cut(s)	104, 662
Hpy8I	GTNNAC	2 cut(s)	707, 725
Hpy99I	CGWCG	1 cut(s)	894
HpyAV	CCTTC	3 cut(s)	101, 445, 592
HpyCH4III	ACNGT	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 559, 578, 689, 883
HpyF3I	CTNAG	5 cut(s)	192, 208, 318, 387, 537
Hsp92II	CATG	6 cut(s)	82, 191, 257, 292, 572, 886
HspAI	GCGC	3 cut(s)	264, 315, 880
Kzo9I	GATC	3 cut(s)	18, 256, 373
LmnI	GCTCC	4 cut(s)	340, 383, 559, 775
Lsp1109I	GCAGC	7 cut(s)	132, 154, 196, 253, 262, 759, 864
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	3 cut(s)	573, 647, 693
MalI	GATC	3 cut(s)	20, 258, 375
MboI	GATC	3 cut(s)	18, 256, 373
MboII	GAAGA	3 cut(s)	182, 335, 368
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	3 cut(s)	127, 138, 345
MluCI	AATT	5 cut(s)	12, 279, 362, 426, 582
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	144
Mph1103I	ATGCAT	2 cut(s)	570, 798
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	3 cut(s)	88, 139, 220
MspR9I	CCNGG	4 cut(s)	139, 557, 840, 846
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	3 cut(s)	557, 840, 846
MvnI	CGCG	3 cut(s)	70, 315, 420
MwoI	GCNNNNNNNGC	5 cut(s)	142, 559, 578, 689, 883
NciI	CCSGG	1 cut(s)	139
NdeI	CATATG	2 cut(s)	775, 798
NdeII	GATC	3 cut(s)	18, 256, 373
NlaIII	CATG	6 cut(s)	82, 191, 257, 292, 572, 886
NlaIV	GGNNCC	1 cut(s)	59
NsbI	TGCGCA	1 cut(s)	881
NsiI	ATGCAT	2 cut(s)	570, 798
NspI	RCATGY	3 cut(s)	191, 572, 886
OliI	CACNNNNGTG	1 cut(s)	467
PaeI	GCATGC	3 cut(s)	191, 572, 886
PaqCI	CACCTGC	1 cut(s)	710
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	196, 520
PkrI	GCNGC	7 cut(s)	144, 147, 186, 252, 268, 749, 879
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PpuMI	RGGWCCY	2 cut(s)	110, 487
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	2 cut(s)	110, 487
Psp6I	CCWGG	3 cut(s)	555, 838, 844
PspGI	CCWGG	3 cut(s)	555, 838, 844
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	7 cut(s)	110, 235, 487, 818, 836, 842, 848
PspPPI	RGGWCCY	2 cut(s)	110, 487
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	7 cut(s)	143, 146, 185, 251, 267, 748, 878
Sau3AI	GATC	3 cut(s)	18, 256, 373
Sau96I	GGNCC	7 cut(s)	110, 235, 487, 818, 836, 842, 848
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	4 cut(s)	139, 557, 840, 846
SduI	GDGCHC	3 cut(s)	127, 138, 345
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	4 cut(s)	110, 235, 487, 818
SmiMI	CAYNNNNRTG	1 cut(s)	467
SphI	GCATGC	3 cut(s)	191, 572, 886
Sse9I	AATT	5 cut(s)	12, 279, 362, 426, 582
SsiI	CCGC	3 cut(s)	61, 68, 420
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	573, 647, 693
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	4 cut(s)	137, 555, 838, 844
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	711
TaqI	TCGA	2 cut(s)	17, 335
TaqII	GACCGA	2 cut(s)	252, 835
TasI	AATT	5 cut(s)	12, 279, 362, 426, 582
TfiI	GAWTC	2 cut(s)	196, 520
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	716
TseI	GCWGC	7 cut(s)	142, 145, 184, 250, 266, 747, 877
TspDTI	ATGAA	3 cut(s)	272, 305, 606
TspRI	CASTG	1 cut(s)	716
VpaK11BI	GGWCC	4 cut(s)	110, 235, 487, 818
XagI	CCTNNNNNAGG	2 cut(s)	105, 813
XapI	RAATTY	3 cut(s)	12, 279, 426
XceI	RCATGY	3 cut(s)	191, 572, 886
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	3 cut(s)	573, 647, 693
Zsp2I	ATGCAT	2 cut(s)	570, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.