FvH4_6g43710

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002548
Physical Location & Seq
Forward (+)
33761956 .. 33763374
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43710.t2

Sequence Viewer

Length: 321 bp
ATGAGTCTTCTGTTCTGCTCCTCCTCTCCCTCAATCTTGTTCACAAAACTCACTAGGGCTACTAGATATTTAAGAATGCTAATGCCAGCACCGGCACTGGTGCATGTACATCATACAACAGCAACAAAGCAATCCTCCTTCACCCTCTCAAACTCGTCAGCCAAGGTTATTGATCCTCCGGTAGCTCATCAACGCCGACTAGCTCAATATCATCCTACCATTTGGGGTCCCAAGCTCATCGATTCCTTCTCCACTCACTACACTGTACATTACTCTTTTCTCATATTATTTTGGTTGACACATACTCTGGCAACACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

10.22

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 75 - 143 2.9e-12 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AfaI GTAC 2 cut(s) 108, 267
AluBI AGCT 3 cut(s) 185, 203, 235
AluI AGCT 3 cut(s) 185, 203, 235
AlwI GGATC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 227
BfaI CTAG 3 cut(s) 54, 63, 200
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 228, 229
Bsa29I ATCGAT 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 10, 13
BshVI ATCGAT 1 cut(s) 240
BsiSI CCGG 2 cut(s) 92, 179
BslFI GGGAC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 81
Bsp1407I TGTACA 2 cut(s) 106, 265
Bsp143I GATC 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 228, 229
BspPI GGATC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 2 cut(s) 106, 265
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 2 cut(s) 106, 265
BstC8I GCNNGC 1 cut(s) 87
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 107
Bsu15I ATCGAT 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 240
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 95, 261
Cac8I GCNNGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 107, 266
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 59, 161, 185, 203, 235
CviKI_1 RGCY 5 cut(s) 59, 161, 185, 203, 235
CviQI GTAC 2 cut(s) 107, 266
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 107
FaiI YATR 4 cut(s) 105, 114, 284, 303
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 103
FokI GGATG 1 cut(s) 198
FspBI CTAG 3 cut(s) 54, 63, 200
HapII CCGG 2 cut(s) 92, 179
Hin1II CATG 1 cut(s) 107
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 4, 242
HpaII CCGG 2 cut(s) 92, 179
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 42, 297
Hpy8I GTNNAC 2 cut(s) 42, 297
HpyAV CCTTC 2 cut(s) 148, 256
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 103
Hsp92II CATG 1 cut(s) 107
KflI GGGWCCC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 83, 99, 105, 192, 293
MaeI CTAG 3 cut(s) 54, 63, 200
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 6 cut(s) 31, 34, 40, 145, 155, 186
MseI TTAA 1 cut(s) 71
MspI CCGG 2 cut(s) 92, 179
Mva1269I GAATGC 1 cut(s) 81
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 228, 229
NspI RCATGY 1 cut(s) 107
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 242
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 228, 229
PspPI GGNCC 1 cut(s) 227
PspPPI RGGWCCY 1 cut(s) 227
RsaI GTAC 2 cut(s) 108, 267
RsaNI GTAC 2 cut(s) 107, 266
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 168, 187, 205, 237
SinI GGWCC 1 cut(s) 227
SspMI CTAG 3 cut(s) 54, 63, 200
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 240
TatI WGTACW 2 cut(s) 106, 265
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 102, 268
TspRI CASTG 2 cut(s) 102, 268
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 107
XspI CTAG 3 cut(s) 54, 63, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.