RLG00000021214

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002548
Physical Location & Seq
Forward (+)
72973042 .. 72996948
23907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021214

Sequence Viewer

Length: 1044 bp
ATGCAGCGGTTAGGAGTAGCATACCACTTCAAAAAGGAGATCCGGGCAGCTATAGTTACTCTTGTTTCTTCCAGTACTGCTAGTACCACAATCGATCTTCAAACAGTTGCTTTGCAATTTCGAATACTAGGACAATATGATTTGTTTAACAAGTTTAGAAATGGCGAAGGAAGCTTCAAAGATAGCTTAAGCAACGAAGTGGAGGGACTTTTGAGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGATGCCAAGACAACAATATTGAATGATGATACTCTACTGAAGCGGGTAGAACAATCACTGGAAACTCCTGTACACTGGAGGATGCCTAGGATAGAAGCTCTAAACTTCATCAAAGTGATGATTCTATTGATTTCACTTATGTGCAGGTGGTGGAGAGAGCTGGATTTCAAATCCAAGGCAAGTTTCTCGAGGGATAGATTGATGGAGAACTACTTAATAGGCCTCACAAAATTCATATGCATATTGTTAGCCATTGATGACATGTATGATGTACATGGATTCTTGGATGAGCTTGAGCTGTTTACAGATGCATGGGAAAATCTTTACAAATTGTATATGGTCGAAGCACGGTGGTTTTACAGCCGATGCACACCTACTTTGGAGGAGTATTTAGAGAATGTATGGACTTCAGTGGGTGGCTCTGGAGCAATGCTCCATGCACTTATTTCTTCACTTGAGTCCTATAACCATGGCTCTCAGCTGATATATTGGGCATCTCTCATGACCCGACTCAGCGATGATTTGGGCACTTCCAAGGCTGAGAACGAGAGAGAAGATGTTGCGAAATCCGTTCAGTGCTACATGGAAGAAGAAGGCATATCGAAAGAAGAAGCACATGAATACATTAAGGGCTTAATCTGCTATGCATGGAAGAAAATCAATGAAGAGAATGCCAAAGCTACCATACCAAAATCCATTGTAAACCTGTCCTTGAACATGGCACAGATTGCACACTGCATTTTTCAACATGGTGATGGTATTGGGACATCAGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

348

Amino Acids

39.61

Weight (kDa)

5.11

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 92 4.8e-25 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 141 - 192 8.3e-07 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 189 - 307 6.3e-26 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 191 - 307 9.9e-30 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 399
AciI CCGC 2 cut(s) 7, 307
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 2 cut(s) 323, 657
AfaI GTAC 4 cut(s) 76, 85, 336, 537
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 7 cut(s) 31, 101, 178, 286, 433, 979, 1010
AjnI CCWGG 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 1 cut(s) 403
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 9 cut(s) 50, 174, 186, 362, 424, 556, 562, 745, 944
AluI AGCT 9 cut(s) 50, 174, 186, 362, 424, 556, 562, 745, 944
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 4, 47
ApoI RAATTY 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 255
AspA2I CCTAGG 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 1028
AsuII TTCGAA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 451
AvrII CCTAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 794
BbvI GCAGC 2 cut(s) 16, 59
BccI CCATC 2 cut(s) 460, 1013
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 3 cut(s) 81, 128, 351
BfmI CTRYAG 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 2 cut(s) 5, 48
BlnI CCTAGG 1 cut(s) 350
BlsI GCNGC 2 cut(s) 6, 49
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 44, 246
BmeT110I CYCGRG 1 cut(s) 451
BmrFI CCNGG 2 cut(s) 44, 246
BmsI GCATC 5 cut(s) 256, 336, 562, 620, 767
BplI GAGNNNNNCTC 2 cut(s) 681, 713
BpmI CTGGAG 3 cut(s) 281, 361, 708
Bpu14I TTCGAA 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 578, 740
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 5 cut(s) 235, 350, 438, 733, 798
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bse1I ACTGG 3 cut(s) 72, 327, 344
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 5 cut(s) 235, 350, 438, 733, 798
BseGI GGATG 3 cut(s) 271, 351, 556
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 3 cut(s) 755, 790, 795
BseNI ACTGG 3 cut(s) 72, 327, 344
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 794
BseXI GCAGC 2 cut(s) 16, 59
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 1 cut(s) 486
BshVI ATCGAT 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 2 cut(s) 246, 940
BsnI GGCC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 794
Bsp1407I TGTACA 2 cut(s) 334, 535
Bsp143I GATC 2 cut(s) 39, 94
Bsp19I CCATGG 1 cut(s) 733
BspACI CCGC 2 cut(s) 7, 307
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 3 cut(s) 754, 789, 796
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 765
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 121
BspTI CTTAAG 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 699
BsrGI TGTACA 2 cut(s) 334, 535
BsrI ACTGG 3 cut(s) 72, 327, 344
BssECI CCNNGG 5 cut(s) 235, 350, 438, 733, 798
BssMI GATC 2 cut(s) 39, 94
BssT1I CCWWGG 5 cut(s) 235, 350, 438, 733, 798
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 106, 615
Bst6I CTCTTC 1 cut(s) 924
BstAFI CTTAAG 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 992
BstAUI TGTACA 2 cut(s) 334, 535
BstBI TTCGAA 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 741, 776, 804
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 3 cut(s) 271, 351, 556
BstKTI GATC 2 cut(s) 42, 97
BstMBI GATC 2 cut(s) 39, 94
BstMWI GCNNNNNNNGC 3 cut(s) 171, 903, 992
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 42, 244
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 794
BstV1I GCAGC 2 cut(s) 16, 59
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 486
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 3 cut(s) 271, 351, 556
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 5 cut(s) 320, 337, 681, 845, 997
BveI ACCTGC 1 cut(s) 399
CciI TCATGA 1 cut(s) 765
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 4 cut(s) 75, 84, 335, 536
CviQI GTAC 4 cut(s) 75, 84, 335, 536
DdeI CTNAG 3 cut(s) 741, 776, 804
DpnI GATC 2 cut(s) 41, 96
DpnII GATC 2 cut(s) 39, 94
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 5 cut(s) 235, 350, 438, 733, 798
Eco147I AGGCCT 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 323, 657
Eco88I CYCGRG 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 5 cut(s) 235, 350, 438, 733, 798
EcoT22I ATGCAT 3 cut(s) 506, 577, 913
ErhI CCWWGG 5 cut(s) 235, 350, 438, 733, 798
FaqI GGGAC 1 cut(s) 219
FauI CCCGC 1 cut(s) 300
FauNDI CATATG 1 cut(s) 500
Fnu4HI GCNGC 2 cut(s) 5, 48
FokI GGATG 3 cut(s) 278, 358, 563
Fsp4HI GCNGC 2 cut(s) 5, 48
FspBI CTAG 3 cut(s) 81, 128, 351
GluI GCNGC 2 cut(s) 5, 48
GsuI CTGGAG 3 cut(s) 281, 361, 708
HaeIII GGCC 1 cut(s) 486
HapII CCGG 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 4 cut(s) 385, 543, 722, 774
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 3 cut(s) 337, 567, 967
Hpy188III TCNNGA 4 cut(s) 260, 451, 687, 766
Hpy8I GTNNAC 3 cut(s) 337, 567, 967
HpyAV CCTTC 2 cut(s) 161, 851
HpyCH4III ACNGT 2 cut(s) 106, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 903, 992
HpyF3I CTNAG 3 cut(s) 741, 776, 804
Kzo9I GATC 2 cut(s) 39, 94
LmnI GCTCC 2 cut(s) 689, 702
Lsp1109I GCAGC 2 cut(s) 16, 59
LweI GCATC 5 cut(s) 256, 336, 562, 620, 767
MaeI CTAG 3 cut(s) 81, 128, 351
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 41, 96
MboI GATC 2 cut(s) 39, 94
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 794
MluCI AATT 3 cut(s) 116, 494, 593
MlyI GAGTC 2 cut(s) 731, 768
MnlI CCTC 7 cut(s) 196, 238, 256, 336, 447, 497, 640
Mph1103I ATGCAT 3 cut(s) 506, 577, 913
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 5 cut(s) 147, 188, 479, 891, 899
MslI CAYNNNNRTG 3 cut(s) 377, 403, 1017
MspA1I CMGCKG 2 cut(s) 7, 745
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 44, 246
Mva1269I GAATGC 2 cut(s) 246, 940
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 171, 903, 992
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 733
NdeI CATATG 1 cut(s) 500
NdeII GATC 2 cut(s) 39, 94
NsiI ATGCAT 3 cut(s) 506, 577, 913
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 451
PagI TCATGA 1 cut(s) 765
PaqCI CACCTGC 1 cut(s) 399
PceI AGGCCT 1 cut(s) 486
PciI ACATGT 1 cut(s) 525
PctI GAATGC 2 cut(s) 246, 940
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 385, 543
PkrI GCNGC 2 cut(s) 6, 49
PleI GAGTC 2 cut(s) 730, 768
PpsI GAGTC 2 cut(s) 730, 768
PscI ACATGT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 4 cut(s) 76, 85, 336, 537
RsaNI GTAC 4 cut(s) 75, 84, 335, 536
RseI CAYNNNNRTG 3 cut(s) 377, 403, 1017
SaqAI TTAA 5 cut(s) 147, 188, 479, 891, 899
SatI GCNGC 2 cut(s) 5, 48
Sau3AI GATC 2 cut(s) 39, 94
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 731, 768
ScrFI CCNGG 2 cut(s) 44, 246
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 5 cut(s) 256, 336, 562, 620, 767
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 451
SmiMI CAYNNNNRTG 3 cut(s) 377, 403, 1017
SmlI CTYRAG 4 cut(s) 187, 451, 557, 719
SmoI CTYRAG 4 cut(s) 187, 451, 557, 719
Sse9I AATT 3 cut(s) 116, 494, 593
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 2 cut(s) 7, 307
SspI AATATT 1 cut(s) 282
SspMI CTAG 3 cut(s) 81, 128, 351
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 42, 244
StyI CCWWGG 5 cut(s) 235, 350, 438, 733, 798
TaaI ACNGT 2 cut(s) 106, 615
TaqI TCGA 5 cut(s) 93, 121, 452, 606, 866
TasI AATT 3 cut(s) 116, 494, 593
TatI WGTACW 3 cut(s) 74, 334, 535
TfiI GAWTC 2 cut(s) 385, 543
Tru1I TTAA 5 cut(s) 147, 188, 479, 891, 899
Tru9I TTAA 5 cut(s) 147, 188, 479, 891, 899
TscAI CASTG 5 cut(s) 327, 344, 681, 845, 1004
TseI GCWGC 2 cut(s) 4, 47
TspDTI ATGAA 5 cut(s) 237, 361, 487, 897, 942
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 5 cut(s) 327, 344, 681, 845, 1004
Vha464I CTTAAG 1 cut(s) 187
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 451
XmaJI CCTAGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 81, 128, 351
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 3 cut(s) 506, 577, 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.