Rh1BG190300

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002548
Physical Location & Seq
Reverse (-)
30474594 .. 30476234
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG190300.1

Sequence Viewer

Length: 858 bp
ATGGAGAACTACTTGTGGGCAATGGGGATTAGTCATGAGCCCCAATCCTCAGAATGCAGGATAGGCCTCACCAAGTTTGTGTGCATATTAACAGTCATTGATGACATGTATGATGTATATGGATTCCTGGATGAGCTCGAGTGCTTTACAGATGCAGTAATTCAATGGAATATGGAAGCAAAGGAGGTACTTCCCGAGTACATGAAGCCGGTCTATATTGCCATGCTCGAGTTTGGCAATGAATTGTCTGATAACGCATTCAAAAATACTGGTTTAAACCCCCTCCCTTATATTAAGAACGAGTGGCTTAATCTTTGTACAGCCTATATGGTGGAAGCACGGTGGTTCTATGGCGGATACACACCAACTCTGGAAGAGTATTTAAAGAATGCATGGACTTCAGTGGGTGGTCCTGGAGCAATGCTCCATGCTTATTTGTTAACCGATGGATGCCAACTAACAGAAGCTTCACTCGAGTCCTTTAACCATGGCTTTCAACTGATATATTGGTCATCCATCTTGACTCGACTCAGTGACGATCTGGGCACTTCCAAGGCTGAGGGCGAGAGAGGTGATGTCGCAAAATCTATTCAGTGCTACATGGAAGAAAAAGGTGTATCGGAAGGAGAAGCACAAGATTACATAAAGGGTTTAATCAGCTATGCATGGAAGAAAATCAACCAAGAGAGTGCCAAAACTAGCATACCAAAATCCATTGTGAACCTGTCTCTGAATATGGCTCGGACTGTTCACTGCATTTTTGAACATGGGGATGGTATTGGAAACTCAATTGGGGTGACTAAGGATCATTTGATCTCTTTGATTGCAAATCCTATCCCCCTCGATGATGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

285

Amino Acids

32.03

Weight (kDa)

4.57

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 225 1.2e-74 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 25 - 225 3e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 354
AclWI GGATC 1 cut(s) 813
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 189, 200, 319
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 4 cut(s) 164, 262, 497, 764
AjnI CCWGG 2 cut(s) 126, 412
AluBI AGCT 3 cut(s) 136, 467, 660
AluI AGCT 3 cut(s) 136, 467, 660
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 1 cut(s) 813
Ama87I CYCGRG 4 cut(s) 137, 194, 227, 473
AoxI GGCC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 61, 584, 808
AvaI CYCGRG 4 cut(s) 137, 194, 227, 473
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 548
BanII GRGCYC 2 cut(s) 42, 138
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 558
BccI CCATC 3 cut(s) 440, 524, 767
BciT130I CCWGG 2 cut(s) 128, 414
BciVI GTATCC 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 1 cut(s) 699
BfuI GTATCC 1 cut(s) 350
Bme1390I CCNGG 2 cut(s) 128, 414
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 4 cut(s) 137, 194, 227, 473
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 128, 414
BmsI GCATC 2 cut(s) 142, 440
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 487, 552
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 3 cut(s) 27, 244, 426
BseBI CCWGG 2 cut(s) 128, 414
BseDI CCNNGG 2 cut(s) 487, 552
BseGI GGATG 4 cut(s) 136, 455, 512, 778
BseMI GCAATG 3 cut(s) 27, 244, 426
BseMII CTCAG 3 cut(s) 63, 544, 549
BseNI ACTGG 1 cut(s) 274
BseSI GKGCMC 1 cut(s) 548
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 4 cut(s) 137, 194, 227, 473
BsiSI CCGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 732
BsmI GAATGC 3 cut(s) 59, 257, 394
BsnI GGCC 1 cut(s) 66
BsoBI CYCGRG 4 cut(s) 137, 194, 227, 473
Bsp1286I GDGCHC 3 cut(s) 42, 138, 548
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 3 cut(s) 538, 805, 813
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 354
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 62, 543, 550
BspHI TCATGA 1 cut(s) 34
BspPI GGATC 1 cut(s) 813
BsrDI GCAATG 3 cut(s) 27, 244, 426
BsrFI RCCGGY 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 487, 552
BssMI GATC 3 cut(s) 538, 805, 813
BssT1I CCWWGG 2 cut(s) 487, 552
Bst2UI CCWGG 2 cut(s) 128, 414
Bst4CI ACNGT 3 cut(s) 94, 342, 748
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 49, 530, 558, 801
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 4 cut(s) 136, 455, 512, 778
BstKTI GATC 3 cut(s) 541, 808, 816
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 3 cut(s) 538, 805, 813
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 2 cut(s) 128, 414
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 126, 412
BstSLI GKGCMC 1 cut(s) 548
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 4 cut(s) 136, 455, 512, 778
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 4 cut(s) 408, 538, 599, 751
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 3 cut(s) 188, 199, 318
CviQI GTAC 3 cut(s) 188, 199, 318
DdeI CTNAG 4 cut(s) 49, 530, 558, 801
DpnI GATC 3 cut(s) 540, 807, 815
DpnII GATC 3 cut(s) 538, 805, 813
DraI TTTAAA 2 cut(s) 276, 384
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 487, 552
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 42, 138
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 4 cut(s) 137, 194, 227, 473
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 126, 412
EcoT14I CCWWGG 2 cut(s) 487, 552
EcoT22I ATGCAT 2 cut(s) 394, 667
EcoT38I GRGCYC 2 cut(s) 42, 138
ErhI CCWWGG 2 cut(s) 487, 552
FokI GGATG 4 cut(s) 143, 462, 499, 785
FriOI GRGCYC 2 cut(s) 42, 138
FspBI CTAG 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 209
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 4 cut(s) 123, 476, 523, 528
HpaI GTTAAC 1 cut(s) 441
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 61, 584, 808
Hpy166II GTNNAC 3 cut(s) 441, 721, 751
Hpy188I TCNGA 5 cut(s) 52, 250, 622, 732, 744
Hpy188III TCNNGA 4 cut(s) 35, 194, 371, 520
Hpy8I GTNNAC 3 cut(s) 441, 721, 751
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 3 cut(s) 94, 342, 748
HpyCH4V TGCA 7 cut(s) 57, 84, 155, 392, 665, 756, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 4 cut(s) 49, 530, 558, 801
KspAI GTTAAC 1 cut(s) 441
Kzo9I GATC 3 cut(s) 538, 805, 813
LmnI GCTCC 2 cut(s) 416, 429
LweI GCATC 2 cut(s) 142, 440
MaeI CTAG 1 cut(s) 699
MaeIII GTNAC 2 cut(s) 533, 796
MalI GATC 3 cut(s) 540, 807, 815
MboI GATC 3 cut(s) 538, 805, 813
MboII GAAGA 3 cut(s) 386, 617, 682
MfeI CAATTG 1 cut(s) 789
MhlI GDGCHC 3 cut(s) 42, 138, 548
MluCI AATT 3 cut(s) 159, 242, 789
MlyI GAGTC 3 cut(s) 485, 517, 522
MnlI CCTC 7 cut(s) 58, 77, 178, 293, 553, 563, 851
Mph1103I ATGCAT 2 cut(s) 394, 667
MseI TTAA 8 cut(s) 89, 275, 294, 309, 383, 440, 483, 653
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 128, 414
MssI GTTTAAAC 1 cut(s) 276
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 3 cut(s) 59, 257, 394
MvaI CCWGG 2 cut(s) 128, 414
MwoI GCNNNNNNNGC 1 cut(s) 63
NcoI CCATGG 1 cut(s) 487
NdeII GATC 3 cut(s) 538, 805, 813
NmuCI GTSAC 2 cut(s) 533, 796
NsiI ATGCAT 2 cut(s) 394, 667
NspI RCATGY 1 cut(s) 109
PaeR7I CTCGAG 3 cut(s) 137, 227, 473
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 66
PciI ACATGT 1 cut(s) 105
PctI GAATGC 3 cut(s) 59, 257, 394
PfeI GAWTC 1 cut(s) 123
PfoI TCCNGGA 2 cut(s) 126, 412
PleI GAGTC 3 cut(s) 484, 517, 522
PmeI GTTTAAAC 1 cut(s) 276
PpsI GAGTC 3 cut(s) 484, 517, 522
PscI ACATGT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 126, 412
PspGI CCWGG 2 cut(s) 126, 412
PspPI GGNCC 1 cut(s) 410
PspXI VCTCGAGB 3 cut(s) 137, 227, 473
RsaI GTAC 3 cut(s) 189, 200, 319
RsaNI GTAC 3 cut(s) 188, 199, 318
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 8 cut(s) 89, 275, 294, 309, 383, 440, 483, 653
Sau3AI GATC 3 cut(s) 538, 805, 813
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 3 cut(s) 485, 517, 522
ScrFI CCNGG 2 cut(s) 128, 414
SduI GDGCHC 3 cut(s) 42, 138, 548
SetI ASST 7 cut(s) 138, 189, 469, 574, 616, 662, 726
SfaNI GCATC 2 cut(s) 142, 440
Sfr274I CTCGAG 3 cut(s) 137, 227, 473
SinI GGWCC 1 cut(s) 410
SlaI CTCGAG 3 cut(s) 137, 227, 473
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 3 cut(s) 137, 227, 473
SmoI CTYRAG 3 cut(s) 137, 227, 473
Sse9I AATT 3 cut(s) 159, 242, 789
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 1 cut(s) 354
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 126, 412
StyI CCWWGG 2 cut(s) 487, 552
TaaI ACNGT 3 cut(s) 94, 342, 748
TaqI TCGA 5 cut(s) 138, 228, 474, 526, 843
TasI AATT 3 cut(s) 159, 242, 789
TatI WGTACW 2 cut(s) 198, 317
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 8 cut(s) 89, 275, 294, 309, 383, 440, 483, 653
Tru9I TTAA 8 cut(s) 89, 275, 294, 309, 383, 440, 483, 653
TscAI CASTG 4 cut(s) 408, 538, 599, 758
TseFI GTSAC 2 cut(s) 533, 796
Tsp45I GTSAC 2 cut(s) 533, 796
TspDTI ATGAA 2 cut(s) 218, 255
TspRI CASTG 4 cut(s) 408, 538, 599, 758
VpaK11BI GGWCC 1 cut(s) 410
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 3 cut(s) 137, 227, 473
XspI CTAG 1 cut(s) 699
Zsp2I ATGCAT 2 cut(s) 394, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.