RchiOBHm_Chr2g0160441

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002548
Physical Location & Seq
Forward (+)
76289609 .. 76291225
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52890

Sequence Viewer

Length: 912 bp
ATGTACAGGTGGTGGAGAGAGTTGGATTTTAAATCGAAGGCAAGTTTCTCAAGGGACAGACTGATGGAGAACTACTTGTGGTCAATGGGGATTTGTCACGAGCCCCAATTCTCAGAATGCAGGATAGGCCTCACCAAGTTTGTGTGCATATTAACAGTCATTGATGACATGTATGATGTATATGGATTCCTGGATGAGCTTGAGTGCTTTACAGATGCAGTAATTCAATGGAATATGGAAGCAAAGGAGGAACTTCCCGAGTACATGAAGCCAATCTATATTGCCATGCTCGAGTTTGGCAATGAATTGGCTGATAATATATTCACAAATAATGGTTTAAACACCCTCCCTTATATTAAGAACGAGTGGGTTAATCTTTGTACAGCCTATATGGTGGAAGCAAGGTGGTTCTACGGCCGATACACACCAACTCTGGAAGAGTATTTAAAGAATGCATGGACTTCAGTGGGTGGCCCTGGAGCAATGCTCCATGCTTATTTGTTAACGCAAGGATCCCAACTAACAGAAGCTTCACTTGAGTCCTATAACCATGGCTCTCAGCTGGTATATTGGGCATCTCTCATGACTCGACTCAGCGATGATTTGGGCACTTCCAAGGCTGAGGGTGAGAGAGGTGATGTCGCGAAATCCATTCAGTGCTACATGGAAGAAAAAGGCGTATCGGAAGAAGAAGCACAGGATTACATAAAGGGTTTAATCAGCTATTCATGGAAGAAAATGAACCAAGAGAGTGCCAAACCTAGCATACCAAAATCTATTGTAAACACGTGTCTGAATATGGCTCGTACTGCTCACTGCATTTTTGAGCACGGGGATGGTATTGGAAACTCAATTGGGGTGACTAAGGATCGTTTGATCTCTTTGATTGCAAATCCTATCCCCCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

303

Amino Acids

34.76

Weight (kDa)

4.93

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 6 - 246 5.1e-84 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 46 - 246 7.1e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 644
AclWI GGATC 3 cut(s) 507, 520, 876
AcoI YGGCCR 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 447
AcvI CACGTG 1 cut(s) 789
AfaI GTAC 4 cut(s) 5, 263, 382, 808
AflIII ACRYGT 3 cut(s) 168, 786, 788
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 2 cut(s) 189, 475
AluBI AGCT 4 cut(s) 199, 530, 562, 723
AluI AGCT 4 cut(s) 199, 530, 562, 723
Alw21I GWGCWC 1 cut(s) 831
AlwI GGATC 3 cut(s) 507, 520, 876
Ama87I CYCGRG 2 cut(s) 257, 290
AoxI GGCC 3 cut(s) 127, 415, 472
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 4 cut(s) 124, 638, 647, 871
AvaI CYCGRG 2 cut(s) 257, 290
BaeGI GKGCMC 1 cut(s) 611
BamHI GGATCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 831
BbvCI CCTCAGC 1 cut(s) 621
BccI CCATC 2 cut(s) 58, 830
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 191, 477
BfaI CTAG 1 cut(s) 762
Bme1390I CCNGG 2 cut(s) 191, 477
BmeT110I CYCGRG 2 cut(s) 257, 290
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 2 cut(s) 191, 477
BmsI GCATC 2 cut(s) 205, 584
BplI GAGNNNNNCTC 2 cut(s) 471, 503
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 621
BpuEI CTTGAG 3 cut(s) 34, 221, 557
BsaAI YACGTR 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 475, 550, 615
Bse3DI GCAATG 2 cut(s) 307, 489
BseBI CCWGG 2 cut(s) 191, 477
BseDI CCNNGG 3 cut(s) 475, 550, 615
BseGI GGATG 2 cut(s) 199, 841
BseMI GCAATG 2 cut(s) 307, 489
BseMII CTCAG 4 cut(s) 126, 572, 607, 612
BseSI GKGCMC 1 cut(s) 611
BseX3I CGGCCG 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 3 cut(s) 129, 417, 474
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 2 cut(s) 257, 290
BslFI GGGAC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 2 cut(s) 122, 457
BsnI GGCC 3 cut(s) 129, 417, 474
BsoBI CYCGRG 2 cut(s) 257, 290
Bsp1286I GDGCHC 3 cut(s) 105, 611, 831
Bsp1407I TGTACA 2 cut(s) 3, 380
Bsp143I GATC 3 cut(s) 512, 868, 876
Bsp19I CCATGG 1 cut(s) 550
Bsp68I TCGCGA 1 cut(s) 644
BspANI GGCC 3 cut(s) 129, 417, 474
BspCNI CTCAG 4 cut(s) 125, 571, 606, 613
BspFNI CGCG 1 cut(s) 644
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 514
BspPI GGATC 3 cut(s) 507, 520, 876
BsrDI GCAATG 2 cut(s) 307, 489
BsrGI TGTACA 2 cut(s) 3, 380
BssECI CCNNGG 3 cut(s) 475, 550, 615
BssMI GATC 3 cut(s) 512, 868, 876
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 2 cut(s) 550, 615
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 191, 477
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 432
BstAUI TGTACA 2 cut(s) 3, 380
BstBAI YACGTR 1 cut(s) 789
BstDEI CTNAG 6 cut(s) 112, 558, 593, 621, 864, 905
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 199, 841
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 3 cut(s) 515, 871, 879
BstMBI GATC 3 cut(s) 512, 868, 876
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 2 cut(s) 126, 809
BstNI CCWGG 2 cut(s) 191, 477
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 189, 475
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BstZI CGGCCG 1 cut(s) 415
BsuRI GGCC 3 cut(s) 129, 417, 474
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 2 cut(s) 199, 841
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 3 cut(s) 471, 662, 814
BtuMI TCGCGA 1 cut(s) 644
CciI TCATGA 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 4 cut(s) 4, 262, 381, 807
CviAII CATG 9 cut(s) 169, 265, 286, 456, 491, 551, 583, 664, 729
CviQI GTAC 4 cut(s) 4, 262, 381, 807
DdeI CTNAG 6 cut(s) 112, 558, 593, 621, 864, 905
DpnI GATC 3 cut(s) 514, 870, 878
DpnII GATC 3 cut(s) 512, 868, 876
DraI TTTAAA 3 cut(s) 31, 339, 447
EaeI YGGCCR 1 cut(s) 415
EagI CGGCCG 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EclXI CGGCCG 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 550, 615
Eco147I AGGCCT 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 447
Eco72I CACGTG 1 cut(s) 789
Eco88I CYCGRG 2 cut(s) 257, 290
EcoRII CCWGG 2 cut(s) 189, 475
EcoT14I CCWWGG 2 cut(s) 550, 615
EcoT22I ATGCAT 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 550, 615
FaeI CATG 9 cut(s) 172, 268, 289, 459, 494, 554, 586, 667, 732
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 68
FatI CATG 9 cut(s) 168, 264, 285, 455, 490, 550, 582, 663, 728
FokI GGATG 2 cut(s) 206, 848
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 3 cut(s) 129, 417, 474
Hin1II CATG 9 cut(s) 172, 268, 289, 459, 494, 554, 586, 667, 732
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 186, 539, 586, 591
HpaI GTTAAC 1 cut(s) 504
HphI GGTGA 4 cut(s) 124, 638, 647, 871
Hpy166II GTNNAC 2 cut(s) 504, 784
Hpy188I TCNGA 4 cut(s) 115, 685, 795, 908
Hpy188III TCNNGA 5 cut(s) 98, 257, 434, 583, 643
Hpy8I GTNNAC 2 cut(s) 504, 784
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 6 cut(s) 120, 147, 218, 455, 819, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 809
HpyF3I CTNAG 6 cut(s) 112, 558, 593, 621, 864, 905
HpySE526I ACGT 1 cut(s) 788
Hsp92II CATG 9 cut(s) 172, 268, 289, 459, 494, 554, 586, 667, 732
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 512, 868, 876
LmnI GCTCC 2 cut(s) 479, 492
LpnPI CCDG 8 cut(s) 106, 176, 203, 419, 462, 489, 548, 683
LweI GCATC 2 cut(s) 205, 584
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 2 cut(s) 95, 859
MalI GATC 3 cut(s) 514, 870, 878
MboI GATC 3 cut(s) 512, 868, 876
MboII GAAGA 5 cut(s) 449, 680, 698, 701, 745
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 3 cut(s) 105, 611, 831
MluCI AATT 4 cut(s) 107, 222, 305, 852
MlyI GAGTC 3 cut(s) 548, 580, 585
MnlI CCTC 5 cut(s) 140, 241, 356, 616, 626
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 8 cut(s) 30, 152, 338, 357, 372, 446, 503, 716
MslI CAYNNNNRTG 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 191, 477
MssI GTTTAAAC 1 cut(s) 339
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 2 cut(s) 122, 457
MvaI CCWGG 2 cut(s) 191, 477
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 2 cut(s) 126, 809
NcoI CCATGG 1 cut(s) 550
NdeII GATC 3 cut(s) 512, 868, 876
NlaIII CATG 9 cut(s) 172, 268, 289, 459, 494, 554, 586, 667, 732
NlaIV GGNNCC 1 cut(s) 514
NmuCI GTSAC 2 cut(s) 95, 859
NruI TCGCGA 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 457
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 1 cut(s) 582
PceI AGGCCT 1 cut(s) 129
PciI ACATGT 1 cut(s) 168
PctI GAATGC 2 cut(s) 122, 457
PfeI GAWTC 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 189
PleI GAGTC 3 cut(s) 547, 580, 585
PmaCI CACGTG 1 cut(s) 789
PmeI GTTTAAAC 1 cut(s) 339
PmlI CACGTG 1 cut(s) 789
PpsI GAGTC 3 cut(s) 547, 580, 585
Ppu21I YACGTR 1 cut(s) 789
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 189, 475
PspCI CACGTG 1 cut(s) 789
PspGI CCWGG 2 cut(s) 189, 475
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 473
PspXI VCTCGAGB 1 cut(s) 290
PsuI RGATCY 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 562
RruI TCGCGA 1 cut(s) 644
RsaI GTAC 4 cut(s) 5, 263, 382, 808
RsaNI GTAC 4 cut(s) 4, 262, 381, 807
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 8 cut(s) 30, 152, 338, 357, 372, 446, 503, 716
Sau3AI GATC 3 cut(s) 512, 868, 876
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 3 cut(s) 548, 580, 585
ScrFI CCNGG 2 cut(s) 191, 477
SduI GDGCHC 3 cut(s) 105, 611, 831
SetI ASST 9 cut(s) 11, 201, 407, 532, 564, 637, 725, 763, 791
SfaNI GCATC 2 cut(s) 205, 584
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 4 cut(s) 49, 200, 290, 536
SmoI CTYRAG 4 cut(s) 49, 200, 290, 536
Sse9I AATT 4 cut(s) 107, 222, 305, 852
SseBI AGGCCT 1 cut(s) 129
SspMI CTAG 1 cut(s) 762
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 189, 475
StyI CCWWGG 2 cut(s) 550, 615
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 791
TaqI TCGA 3 cut(s) 35, 291, 589
TasI AATT 4 cut(s) 107, 222, 305, 852
TatI WGTACW 3 cut(s) 3, 261, 380
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 8 cut(s) 30, 152, 338, 357, 372, 446, 503, 716
Tru9I TTAA 8 cut(s) 30, 152, 338, 357, 372, 446, 503, 716
TscAI CASTG 3 cut(s) 471, 662, 821
TseFI GTSAC 2 cut(s) 95, 859
Tsp45I GTSAC 2 cut(s) 95, 859
TspDTI ATGAA 4 cut(s) 281, 318, 717, 755
TspRI CASTG 3 cut(s) 471, 662, 821
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.