Rroxscaffold_2G00089830

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002548
Physical Location & Seq
Reverse (-)
11742436 .. 11743703
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089830.1

Sequence Viewer

Length: 912 bp
ATGAACTCGCAACACTTCGCATTATTCTTGTTGCAGCATGAATCATATGCCTCACAATTGGAGGGTCTAAAGCAGATTGTTTCTAAAGCTTTACTTGTGTCGAGTACTAAAGACGATGCTTGTCCGATTTTAAAGCTCGCAGACTTGATGCAGCGGTTAGGAGTAGCATACCACTTCAAAAAGGAGATCCAGGCAGCTATAGTTACTCTTGTTTCTTCCAGTACTGCTAGTACCACAACCAATCTTCAAAAAGTTGATTTGCAATTTCGAATACTAAGACAATATGGTATTTCAATTAGCTCAGGTAATGATGGGGAAGAAAGCATCAAAGATAGCTTAAGCAACGATGTGGAGGGACTTCTGTGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGAAGCCAAGAGTTTTAGGTCGAAAAAGAAGCAATCCTTAGCAAAATTGAACGATGAAAATCTACTGAAGCGGGTAGAACAATCACTGGAAACTCCTGTACACTGGAGGATGCCTAGGATAGAAGCTCTAAACTTCATCAACATATACCAAAGGGATGATTCTAGTAACCTGGCTCTGCTTGAGTGGTGGAGAGAGCTGGATTTCAAATCCAAGGCAAGTTTCTCGAGGGACAGATTGATGGAGAACTGCTTGTTGGCAATGGCGATTAATTATGAACCCCAATTCTCAGAATGCAGAATAGGCCTCACGAAATTCATCTGCATATTGTCAGCCATTGATGACATGTATGATGTACATGGATTCCTGGATGAGCTTGAGCTGTTTACAGATGCAGTAACTCGGTGGAATCTGAAGGCTACTGAGGACCTTCTTGAGTACATGAAGCCAATCTATTCTGCCATGCTCAAATTTGGCAACGAATTAGCTGACAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

303

Amino Acids

34.55

Weight (kDa)

5.21

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 12 - 167 1.2e-30 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 202 - 302 4.2e-34 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 242 - 301 2.8e-11 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 154, 484
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 2 cut(s) 725, 881
AcuI CTGAAG 2 cut(s) 500, 845
AfaI GTAC 6 cut(s) 106, 223, 232, 513, 768, 851
AflII CTTAAG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 5 cut(s) 178, 248, 294, 463, 619
AjnI CCWGG 4 cut(s) 189, 394, 582, 777
AjuI GAANNNNNNNTTGG 4 cut(s) 617, 649, 650, 682
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 1 cut(s) 715
ApeKI GCWGC 3 cut(s) 34, 151, 194
ApoI RAATTY 2 cut(s) 725, 881
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 405
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 838
AsuII TTCGAA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 637
AvaII GGWCC 1 cut(s) 838
AvrII CCTAGG 1 cut(s) 527
BbvI GCAGC 3 cut(s) 46, 163, 206
BccI CCATC 2 cut(s) 305, 646
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 4 cut(s) 191, 396, 584, 779
BfaI CTAG 3 cut(s) 228, 528, 576
BfmI CTRYAG 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 337
BisI GCNGC 3 cut(s) 35, 152, 195
BlnI CCTAGG 1 cut(s) 527
BlsI GCNGC 3 cut(s) 36, 153, 196
BmcAI AGTACT 2 cut(s) 106, 223
Bme1390I CCNGG 4 cut(s) 191, 396, 584, 779
Bme18I GGWCC 1 cut(s) 838
BmeT110I CYCGRG 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 838
BmrFI CCNGG 4 cut(s) 191, 396, 584, 779
BmsI GCATC 5 cut(s) 106, 138, 333, 513, 793
BpmI CTGGAG 2 cut(s) 431, 538
Bpu10I CCTNAGC 2 cut(s) 301, 451
Bpu14I TTCGAA 1 cut(s) 268
BpuEI CTTGAG 3 cut(s) 614, 809, 866
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 385, 527, 624
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bse1I ACTGG 3 cut(s) 219, 504, 521
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 4 cut(s) 191, 396, 584, 779
BseDI CCNNGG 3 cut(s) 385, 527, 624
BseGI GGATG 3 cut(s) 528, 574, 787
BseJI GATNNNNATC 1 cut(s) 471
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 3 cut(s) 315, 714, 825
BseNI ACTGG 3 cut(s) 219, 504, 521
BseXI GCAGC 3 cut(s) 46, 163, 206
BshFI GGCC 1 cut(s) 717
BsiHKCI CYCGRG 1 cut(s) 637
BslFI GGGAC 2 cut(s) 369, 656
BsmFI GGGAC 2 cut(s) 369, 656
BsmI GAATGC 2 cut(s) 396, 710
BsnI GGCC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 637
Bsp119I TTCGAA 1 cut(s) 268
Bsp1407I TGTACA 2 cut(s) 511, 766
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 154, 484
BspANI GGCC 1 cut(s) 717
BspCNI CTCAG 3 cut(s) 314, 713, 826
BspPI GGATC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 678
BsrGI TGTACA 2 cut(s) 511, 766
BsrI ACTGG 3 cut(s) 219, 504, 521
BssECI CCNNGG 3 cut(s) 385, 527, 624
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 3 cut(s) 385, 527, 624
Bst2UI CCWGG 4 cut(s) 191, 396, 584, 779
BstAFI CTTAAG 1 cut(s) 337
BstAUI TGTACA 2 cut(s) 511, 766
BstBI TTCGAA 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 275, 301, 451, 700, 834
BstF5I GGATG 3 cut(s) 528, 574, 787
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 714
BstNI CCWGG 4 cut(s) 191, 396, 584, 779
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 4 cut(s) 189, 394, 582, 777
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 46, 163, 206
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 1 cut(s) 717
BtsCI GGATG 3 cut(s) 528, 574, 787
BtsIMutI CAGTG 2 cut(s) 497, 514
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 838
Csp6I GTAC 6 cut(s) 105, 222, 231, 512, 767, 850
CviAII CATG 5 cut(s) 38, 757, 770, 853, 874
CviQI GTAC 6 cut(s) 105, 222, 231, 512, 767, 850
DdeI CTNAG 5 cut(s) 275, 301, 451, 700, 834
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
DraI TTTAAA 1 cut(s) 132
Eco130I CCWWGG 3 cut(s) 385, 527, 624
Eco147I AGGCCT 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 838
Eco57I CTGAAG 2 cut(s) 500, 845
Eco88I CYCGRG 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 838
EcoRII CCWGG 4 cut(s) 189, 394, 582, 777
EcoT14I CCWWGG 3 cut(s) 385, 527, 624
ErhI CCWWGG 3 cut(s) 385, 527, 624
FaeI CATG 5 cut(s) 41, 760, 773, 856, 877
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 434, 466
FaqI GGGAC 2 cut(s) 369, 656
FatI CATG 5 cut(s) 37, 756, 769, 852, 873
FauI CCCGC 1 cut(s) 477
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 35, 152, 195
FokI GGATG 3 cut(s) 535, 581, 794
Fsp4HI GCNGC 3 cut(s) 35, 152, 195
FspBI CTAG 3 cut(s) 228, 528, 576
GluI GCNGC 3 cut(s) 35, 152, 195
GsuI CTGGAG 2 cut(s) 431, 538
HaeIII GGCC 1 cut(s) 717
Hin1II CATG 5 cut(s) 41, 760, 773, 856, 877
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 41, 572, 774, 820
Hpy166II GTNNAC 2 cut(s) 514, 798
Hpy188I TCNGA 3 cut(s) 126, 703, 825
Hpy188III TCNNGA 4 cut(s) 410, 637, 721, 845
Hpy8I GTNNAC 2 cut(s) 514, 798
HpyAV CCTTC 2 cut(s) 820, 851
HpyCH4V TGCA 6 cut(s) 34, 151, 262, 708, 735, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 714
HpyF3I CTNAG 5 cut(s) 275, 301, 451, 700, 834
Hsp92II CATG 5 cut(s) 41, 760, 773, 856, 877
Kzo9I GATC 1 cut(s) 186
Lsp1109I GCAGC 3 cut(s) 46, 163, 206
LweI GCATC 5 cut(s) 106, 138, 333, 513, 793
MaeI CTAG 3 cut(s) 228, 528, 576
MaeIII GTNAC 3 cut(s) 202, 578, 808
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 4 cut(s) 207, 236, 329, 413
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 186
MnlI CCTC 9 cut(s) 55, 61, 346, 388, 406, 513, 633, 728, 829
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 3 cut(s) 131, 338, 681
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 337
MspR9I CCNGG 4 cut(s) 191, 396, 584, 779
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 2 cut(s) 396, 710
MvaI CCWGG 4 cut(s) 191, 396, 584, 779
MwoI GCNNNNNNNGC 1 cut(s) 714
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 186
NlaIII CATG 5 cut(s) 41, 760, 773, 856, 877
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 637
PceI AGGCCT 1 cut(s) 717
PciI ACATGT 1 cut(s) 756
PctI GAATGC 2 cut(s) 396, 710
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 4 cut(s) 41, 572, 774, 820
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 3 cut(s) 36, 153, 196
PpuMI RGGWCCY 1 cut(s) 838
PscI ACATGT 1 cut(s) 756
PshBI ATTAAT 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 4 cut(s) 189, 394, 582, 777
PspGI CCWGG 4 cut(s) 189, 394, 582, 777
PspPI GGNCC 1 cut(s) 838
PspPPI RGGWCCY 1 cut(s) 838
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 6 cut(s) 106, 223, 232, 513, 768, 851
RsaNI GTAC 6 cut(s) 105, 222, 231, 512, 767, 850
SaqAI TTAA 3 cut(s) 131, 338, 681
SatI GCNGC 3 cut(s) 35, 152, 195
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 838
ScaI AGTACT 2 cut(s) 106, 223
ScrFI CCNGG 4 cut(s) 191, 396, 584, 779
SfaNI GCATC 5 cut(s) 106, 138, 333, 513, 793
SfcI CTRYAG 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 637
SfuI TTCGAA 1 cut(s) 268
SinI GGWCC 1 cut(s) 838
SlaI CTCGAG 1 cut(s) 637
SmlI CTYRAG 5 cut(s) 337, 593, 637, 788, 845
SmoI CTYRAG 5 cut(s) 337, 593, 637, 788, 845
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 2 cut(s) 154, 484
SspMI CTAG 3 cut(s) 228, 528, 576
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 4 cut(s) 189, 394, 582, 777
StyI CCWWGG 3 cut(s) 385, 527, 624
TaqI TCGA 4 cut(s) 101, 268, 434, 638
TatI WGTACW 5 cut(s) 104, 221, 511, 766, 849
TfiI GAWTC 4 cut(s) 41, 572, 774, 820
Tru1I TTAA 3 cut(s) 131, 338, 681
Tru9I TTAA 3 cut(s) 131, 338, 681
TscAI CASTG 2 cut(s) 504, 521
TseI GCWGC 3 cut(s) 34, 151, 194
TspDTI ATGAA 8 cut(s) 17, 54, 387, 483, 538, 702, 718, 869
TspRI CASTG 2 cut(s) 504, 521
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 838
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 2 cut(s) 725, 881
XceI RCATGY 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 637
XmaJI CCTAGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 3 cut(s) 228, 528, 576
ZrmI AGTACT 2 cut(s) 106, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.