Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002548

Physical Location & Seq

Genomic Coordinates Reverse (-)

6666733 .. 6667338

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGCATGGACTTCAGTGGGTGGTCCTGGGGCAATTCTCCATGCTTATTTGTTGTTGCAAGGACGCAACATAACAAAAAGCTCACTTGACTCCGTTGAGCATGGCTCTCAAATAATATATTGGTCATCTCTAATGACTCGACTTAGCGATGATTTGGCCACTTCCAAGGCTGAGAGTGAGAGAGGTGATGTGGCAAAATCTGTTGAGTGCTGCATGAAAGAAAGAGGCATATCTGAAGAAGAAGCTCAGGACTGCATAAACGAATTGATCTGCTCTTCGTGGAAGAAGATTAATGAGGAGAGTTCAAAAACTGCCATTCCAAAATCAATTGTAAAAATGTCACTGAATATGGCTCGGACCGCTCACTCTATTTTCCAACATGGAGACGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

5.53

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43710 FvH4_6g43710 FvH4_6g43720 FvH4_6g43730
malus_domestica	MD17G1091300.v1.1
prunus_persica	Prupe.3G222200_v2.0.a1 Prupe.3G222300_v2.0.a1
pyrus_communis	pycom17g08820 pycom17g08830 pycom17g08840 pycom17g08850
rosa_chinensis	RchiOBHm_Chr2g0160361 RchiOBHm_Chr2g0160421 RchiOBHm_Chr2g0160441
rosa_laevigata	RLG00000021214 RLG00000021215
rosa_multiflora	Rmu_sc0008148.1_g000036 Rmu_sc0014846.1_g000003 Rmu_sc0017778.1_g000001 Rmu_ssc0000110.1_g000002 Rmu_ssc0000110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00089810 Rroxscaffold_2G00089820 Rroxscaffold_2G00089830
rosa_rugosa	Rorug01G0206900 Rorug02G0483200 Rorug02G0483200 Rorug05G0106900 Rorug05G0106900
rosa_samantha	Rh1BG190200 Rh1BG190300 Rh1BG190400 Rh1DG219200 Rh2AG548400 Rh2BG562000 Rh2CG532800 Rh2DG570500 Rh2DG570800 Rh6AG058100 Rh6AG058400
rosa_wichuraiana	Rw2G045400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	84, 248
AluI	AGCT	2 cut(s)	84, 248
Alw26I	GTCTC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	26, 360
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	26, 360
BalI	TGGCCA	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	381
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	26, 360
BmgT120I	GGNCC	2 cut(s)	26, 360
BmrFI	CCNGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu10I	CCTNAGC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	29, 168
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	29, 168
BseMII	CTCAG	2 cut(s)	165, 263
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	270, 391
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	2 cut(s)	166, 262
BspQI	GCTCTTC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	29, 168
BssMI	GATC	2 cut(s)	270, 391
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	146, 174, 249
BstKTI	GATC	2 cut(s)	273, 394
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	270, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	24, 344
Cfr13I	GGNCC	2 cut(s)	26, 360
CpoI	CGGWCCG	1 cut(s)	360
CseI	GACGC	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	360
CviAII	CATG	5 cut(s)	9, 44, 104, 217, 383
CviJI	RGCY	6 cut(s)	84, 108, 161, 173, 248, 356
CviKI_1	RGCY	6 cut(s)	84, 108, 161, 173, 248, 356
DdeI	CTNAG	3 cut(s)	146, 174, 249
DpnI	GATC	2 cut(s)	272, 393
DpnII	GATC	2 cut(s)	270, 391
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	26, 360
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	5 cut(s)	12, 47, 107, 220, 386
FatI	CATG	5 cut(s)	8, 43, 103, 216, 382
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	12, 47, 107, 220, 386
HinfI	GANTC	2 cut(s)	92, 139
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	238, 360
Hpy188III	TCNNGA	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	8, 61, 216, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	146, 174, 249
Hsp92II	CATG	5 cut(s)	12, 47, 107, 220, 386
Kzo9I	GATC	2 cut(s)	270, 391
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	15, 42, 236
Lsp1109I	GCAGC	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	272, 393
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	2 cut(s)	270, 391
MboII	GAAGA	5 cut(s)	251, 254, 270, 298, 301
MfeI	CAATTG	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	3 cut(s)	36, 266, 330
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	86, 133
MnlI	CCTC	3 cut(s)	179, 221, 292
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	270, 391
NlaIII	CATG	5 cut(s)	12, 47, 107, 220, 386
NmuCI	GTSAC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	86, 133
PpsI	GAGTC	2 cut(s)	86, 133
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	26, 360
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	270, 391
Sau96I	GGNCC	2 cut(s)	26, 360
SchI	GAGTC	2 cut(s)	86, 133
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	3 cut(s)	86, 190, 250
SinI	GGWCC	2 cut(s)	26, 360
Sse9I	AATT	3 cut(s)	36, 266, 330
SsiI	CCGC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	36, 266, 330
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	24, 351
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	17, 233
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	2 cut(s)	24, 351
VpaK11BI	GGWCC	2 cut(s)	26, 360
VspI	ATTAAT	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.