Rorug01G0206900

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002548
Physical Location & Seq
Reverse (-)
29161405 .. 29164637
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0206900.1

Sequence Viewer

Length: 864 bp
ATGGTAGCTCTACCTCAGCTTCTTCACTATCACCACCACCTCTTCTCCCACCAATTCCCCAAAACCCATTTCCAGAGACACAACCTCACTAAACGAGGCTCTACCTTTCTCACCAGGATGTCCATTTCATCAGACCCTCGCCCACTGGACAGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGTGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTAGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGGTGGGTTTGGGCACAAGGAACCCTGACAGTTTACTGCTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAAGAAATCAGTGAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

287

Amino Acids

32.4

Weight (kDa)

5.67

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 62 - 241 4.8e-22 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 64 - 246 1.1e-27 Haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 2 cut(s) 230, 469
AclWI GGATC 2 cut(s) 221, 378
AcsI RAATTY 2 cut(s) 302, 389
AfiI CCNNNNNNNGG 3 cut(s) 424, 452, 734
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 6 cut(s) 263, 398, 482, 496, 575, 634
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
AluBI AGCT 7 cut(s) 8, 19, 343, 538, 638, 707, 719
AluI AGCT 7 cut(s) 8, 19, 343, 538, 638, 707, 719
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 70, 697
AlwI GGATC 2 cut(s) 221, 378
ApeKI GCWGC 2 cut(s) 503, 716
ApoI RAATTY 2 cut(s) 302, 389
Asp700I GAANNNNTTC 2 cut(s) 189, 258
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 23, 103, 545, 818
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 746
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 490, 728
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 70, 697
BfaI CTAG 3 cut(s) 164, 581, 770
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 2 cut(s) 504, 717
BlsI GCNGC 2 cut(s) 505, 718
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 3 cut(s) 288, 752, 781
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 318, 437, 763
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 2 cut(s) 729, 798
Bpu10I CCTNAGC 1 cut(s) 15
BsaBI GATNNNNATC 3 cut(s) 225, 369, 427
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 452, 734
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 3 cut(s) 150, 558, 834
Bse8I GATNNNNATC 3 cut(s) 225, 369, 427
BseBI CCWGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 123, 333
BseJI GATNNNNATC 3 cut(s) 225, 369, 427
BseLI CCNNNNNNNGG 3 cut(s) 424, 452, 734
BseMII CTCAG 4 cut(s) 29, 288, 554, 708
BseNI ACTGG 3 cut(s) 150, 558, 834
BseRI GAGGAG 2 cut(s) 168, 353
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 490, 728
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 424, 452, 734
BsmAI GTCTC 2 cut(s) 70, 697
BsmI GAATGC 1 cut(s) 729
Bsp1286I GDGCHC 2 cut(s) 345, 746
Bsp143I GATC 3 cut(s) 226, 370, 601
BspACI CCGC 2 cut(s) 230, 469
BspCNI CTCAG 4 cut(s) 28, 289, 555, 707
BspLI GGNNCC 3 cut(s) 288, 752, 781
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 2 cut(s) 221, 378
BsrBI CCGCTC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 3 cut(s) 150, 558, 834
BssAI RCCGGY 1 cut(s) 727
BssMI GATC 3 cut(s) 226, 370, 601
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 152, 438, 761
Bst6I CTCTTC 2 cut(s) 47, 828
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 4 cut(s) 15, 297, 563, 694
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 2 cut(s) 123, 333
BstKTI GATC 3 cut(s) 229, 373, 604
BstMAI GTCTC 2 cut(s) 70, 697
BstMBI GATC 3 cut(s) 226, 370, 601
BstMWI GCNNNNNNNGC 3 cut(s) 173, 644, 713
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 2 cut(s) 415, 671
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 2 cut(s) 490, 728
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 2 cut(s) 226, 370
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 2 cut(s) 226, 370
BtsCI GGATG 2 cut(s) 123, 333
BtsIMutI CAGTG 6 cut(s) 143, 294, 328, 551, 827, 858
Cac8I GCNNGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 556
CviAII CATG 2 cut(s) 412, 668
DdeI CTNAG 4 cut(s) 15, 297, 563, 694
DpnI GATC 3 cut(s) 228, 372, 603
DpnII GATC 3 cut(s) 226, 370, 601
Eam1104I CTCTTC 2 cut(s) 47, 828
EarI CTCTTC 2 cut(s) 47, 828
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 343
Eco91I GGTNACC 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 2 cut(s) 415, 671
FaiI YATR 6 cut(s) 203, 243, 413, 449, 462, 669
FatI CATG 2 cut(s) 411, 667
FauI CCCGC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 504, 717
FokI GGATG 2 cut(s) 130, 340
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 504, 717
FspBI CTAG 3 cut(s) 164, 581, 770
GluI GCNGC 2 cut(s) 504, 717
GsuI CTGGAG 2 cut(s) 729, 798
HapII CCGG 1 cut(s) 728
Hin1II CATG 2 cut(s) 415, 671
HinfI GANTC 2 cut(s) 221, 686
HpaII CCGG 1 cut(s) 728
HphI GGTGA 4 cut(s) 23, 103, 545, 818
Hpy166II GTNNAC 1 cut(s) 764
Hpy188I TCNGA 4 cut(s) 133, 226, 419, 433
Hpy188III TCNNGA 7 cut(s) 73, 182, 263, 362, 562, 620, 696
Hpy8I GTNNAC 1 cut(s) 764
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 3 cut(s) 152, 438, 761
HpyCH4V TGCA 4 cut(s) 331, 506, 518, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 644, 713
HpyF3I CTNAG 4 cut(s) 15, 297, 563, 694
Hsp92II CATG 2 cut(s) 415, 671
Kzo9I GATC 3 cut(s) 226, 370, 601
LmnI GCTCC 4 cut(s) 181, 237, 340, 779
Lsp1109I GCAGC 2 cut(s) 490, 728
LweI GCATC 3 cut(s) 318, 437, 763
MaeI CTAG 3 cut(s) 164, 581, 770
MaeIII GTNAC 2 cut(s) 508, 806
MalI GATC 3 cut(s) 228, 372, 603
MbiI CCGCTC 1 cut(s) 232
MboI GATC 3 cut(s) 226, 370, 601
MboII GAAGA 8 cut(s) 14, 34, 298, 410, 419, 432, 845, 856
MflI RGATCY 2 cut(s) 226, 370
MhlI GDGCHC 2 cut(s) 345, 746
MluCI AATT 5 cut(s) 53, 189, 302, 389, 815
MmeI TCCRAC 1 cut(s) 819
MroXI GAANNNNTTC 2 cut(s) 189, 258
MseI TTAA 3 cut(s) 276, 651, 795
MslI CAYNNNNRTG 2 cut(s) 116, 240
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 729
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 173, 644, 713
NdeII GATC 3 cut(s) 226, 370, 601
NlaIII CATG 2 cut(s) 415, 671
NlaIV GGNNCC 3 cut(s) 288, 752, 781
NmuCI GTSAC 1 cut(s) 806
NspI RCATGY 2 cut(s) 415, 671
PaeI GCATGC 1 cut(s) 671
PciI ACATGT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 729
PdmI GAANNNNTTC 2 cut(s) 189, 258
PfeI GAWTC 2 cut(s) 221, 686
PkrI GCNGC 2 cut(s) 505, 718
PscI ACATGT 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 288, 752, 781
PspPI GGNCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 2 cut(s) 226, 370
PvuII CAGCTG 1 cut(s) 719
RseI CAYNNNNRTG 2 cut(s) 116, 240
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 276, 651, 795
SatI GCNGC 2 cut(s) 504, 717
Sau3AI GATC 3 cut(s) 226, 370, 601
Sau96I GGNCC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 345, 746
SfaNI GCATC 3 cut(s) 318, 437, 763
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 116, 240
SphI GCATGC 1 cut(s) 671
Sse9I AATT 5 cut(s) 53, 189, 302, 389, 815
SsiI CCGC 2 cut(s) 230, 469
SspMI CTAG 3 cut(s) 164, 581, 770
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 3 cut(s) 152, 438, 761
TaqI TCGA 2 cut(s) 183, 604
TasI AATT 5 cut(s) 53, 189, 302, 389, 815
TfiI GAWTC 2 cut(s) 221, 686
Tru1I TTAA 3 cut(s) 276, 651, 795
Tru9I TTAA 3 cut(s) 276, 651, 795
TscAI CASTG 6 cut(s) 150, 301, 328, 558, 834, 858
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 2 cut(s) 503, 716
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 4 cut(s) 117, 298, 464, 609
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 6 cut(s) 150, 301, 328, 558, 834, 858
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 2 cut(s) 302, 389
XceI RCATGY 2 cut(s) 415, 671
XmnI GAANNNNTTC 2 cut(s) 189, 258
XspI CTAG 3 cut(s) 164, 581, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.