Rh6AG058400

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002548
Physical Location & Seq
Reverse (-)
8723733 .. 8724173
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG058400.1

Sequence Viewer

Length: 441 bp
ATGTTACTTTGCAAATCCACGGATTTGTTTATTAACGAGTTCAGAAATGGCGAAGTAAGCTTCAAAGATAGCTTAAGCAACGATGTGGAGGGACTTTTGAGCTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGAAGTCAAGAGTTTCAGTTCGAACAACTTCAAGCAATCCATGGCAACAATATTGAATGATGATAATCTACTGAAGCGGGTAGAACAATCACTGGAAACTCCCATACACTGGAGGATGCCTAGGATAGAAGCTCTAAACTTCATCAACATGTACCAAACGGATGATTCTAGTAACCTGGCACTGCTTGAGTTAGCCAAATTGGACTATACTCTTGTTCAATCAGTACATCAAATGGAGATAAAGAAGCTCTCAAGGCAAGATACATTGATTGAATTTGTGACTGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

146

Amino Acids

16.73

Weight (kDa)

4.65

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 11 - 81 1e-16 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 2 cut(s) 302, 375
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 5 cut(s) 64, 181, 205, 368, 422
AjnI CCWGG 2 cut(s) 130, 324
AloI GAACNNNNNNTCC 2 cut(s) 126, 158
AluBI AGCT 5 cut(s) 60, 72, 102, 281, 397
AluI AGCT 5 cut(s) 60, 72, 102, 281, 397
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 2 cut(s) 141, 176
AspA2I CCTAGG 1 cut(s) 269
AsuII TTCGAA 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 132, 326
BfaI CTAG 2 cut(s) 270, 318
BfrI CTTAAG 1 cut(s) 73
BlnI CCTAGG 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 132, 326
BmrFI CCNGG 2 cut(s) 132, 326
BmsI GCATC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 167, 280
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 356, 385
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 18, 121, 189, 269
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 246, 263
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 132, 326
BseDI CCNNGG 4 cut(s) 18, 121, 189, 269
BseGI GGATG 2 cut(s) 270, 316
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 246, 263
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 226
BspT104I TTCGAA 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 246, 263
BssECI CCNNGG 4 cut(s) 18, 121, 189, 269
BssT1I CCWWGG 3 cut(s) 121, 189, 269
Bst2UI CCWGG 2 cut(s) 132, 326
Bst4CI ACNGT 1 cut(s) 433
BstAFI CTTAAG 1 cut(s) 73
BstBI TTCGAA 1 cut(s) 170
BstDSI CCRYGG 2 cut(s) 18, 189
BstF5I GGATG 2 cut(s) 270, 316
BstMWI GCNNNNNNNGC 2 cut(s) 57, 403
BstNI CCWGG 2 cut(s) 132, 326
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 130, 324
BtgI CCRYGG 2 cut(s) 18, 189
BtsCI GGATG 2 cut(s) 270, 316
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 3 cut(s) 239, 256, 329
Csp6I GTAC 2 cut(s) 301, 374
CviAII CATG 2 cut(s) 190, 298
CviJI RGCY 7 cut(s) 60, 72, 102, 113, 281, 344, 397
CviKI_1 RGCY 7 cut(s) 60, 72, 102, 113, 281, 344, 397
CviQI GTAC 2 cut(s) 301, 374
Eco130I CCWWGG 3 cut(s) 121, 189, 269
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 130, 324
EcoT14I CCWWGG 3 cut(s) 121, 189, 269
ErhI CCWWGG 3 cut(s) 121, 189, 269
FaeI CATG 2 cut(s) 193, 301
FaiI YATR 5 cut(s) 108, 191, 254, 299, 357
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 189, 297
FauI CCCGC 1 cut(s) 219
FokI GGATG 2 cut(s) 277, 323
FspBI CTAG 2 cut(s) 270, 318
GsuI CTGGAG 2 cut(s) 167, 280
Hin1II CATG 2 cut(s) 193, 301
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 146, 157
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 403
Hsp92II CATG 2 cut(s) 193, 301
LpnPI CCDG 7 cut(s) 117, 131, 144, 227, 244, 311, 338
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 270, 318
MaeIII GTNAC 3 cut(s) 3, 320, 427
MboII GAAGA 1 cut(s) 149
MluCI AATT 2 cut(s) 347, 422
MnlI CCTC 4 cut(s) 82, 124, 142, 255
MroXI GAANNNNTTC 2 cut(s) 141, 176
MseI TTAA 3 cut(s) 33, 74, 439
MslI CAYNNNNRTG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 132, 326
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 132, 326
MwoI GCNNNNNNNGC 2 cut(s) 57, 403
NcoI CCATGG 1 cut(s) 189
NlaIII CATG 2 cut(s) 193, 301
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 301
NspV TTCGAA 1 cut(s) 170
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 141, 176
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 258
PscI ACATGT 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 130, 324
PspGI CCWGG 2 cut(s) 130, 324
RsaI GTAC 2 cut(s) 302, 375
RsaNI GTAC 2 cut(s) 301, 374
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 33, 74, 439
ScrFI CCNGG 2 cut(s) 132, 326
SetI ASST 7 cut(s) 62, 74, 104, 123, 283, 327, 399
SfaNI GCATC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 73, 335, 400
SmoI CTYRAG 3 cut(s) 73, 335, 400
Sse9I AATT 2 cut(s) 347, 422
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 201
SspMI CTAG 2 cut(s) 270, 318
StyD4I CCNGG 2 cut(s) 130, 324
StyI CCWWGG 3 cut(s) 121, 189, 269
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 170
TasI AATT 2 cut(s) 347, 422
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 33, 74, 439
Tru9I TTAA 3 cut(s) 33, 74, 439
TscAI CASTG 3 cut(s) 246, 263, 336
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 123, 280
TspGWI ACGGA 2 cut(s) 35, 323
TspRI CASTG 3 cut(s) 246, 263, 336
Van91I CCANNNNNTGG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 73
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 301
XmaJI CCTAGG 1 cut(s) 269
XmnI GAANNNNTTC 2 cut(s) 141, 176
XspI CTAG 2 cut(s) 270, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.