RchiOBHm_Chr2g0160361

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002548
Physical Location & Seq
Forward (+)
76250229 .. 76253062
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52883

Sequence Viewer

Length: 1368 bp
ATGAGTCTTCTGTTCTGCTCCTCCTCTCCCTCATTCTTGTTCACAAAACTCACTAGTACTAGGTATTTAAGAATGCTAGCACCAGTATTGGTGCATGTACATCATACAACAGCAACAAAGCAATCCTCCTTCATTCTCTCAAATTCGTCATCCAAGATTATTGAACCTCCGGTTGCTCATCAACGCCGACTAGCTCAATATCATCCTACCATTTGGGGTCCCATGCTCATTGATTCCTTCTCGACTCACTACACCCATGAATCATATGCCTCACAATTGGAGGGTCTAAAGCAGATTGTTTCTAAAGCTTTACTTGTGTCGAGTACTAAAGACGATGCTTGTTCGATTTTAAAGCTCGCAGACTTGATGCAGCGGTTAGGAGTAGCATACCACTTCAAAAAGGAGATCCAGGCAGCTATAGTTACTCTTGTTTCTTCCAGTACTGCTAGTACCACAACCAATCTTCAAAAAGTTTCTTTGCAATTTCAAATACTAAGACAATATGGTATTTCAATTAGCTCAGATTTGTTTTTTAAGGATGGCGAAGAAAGCTTAAGCAACGATGTGGAGGGACTTCTGTGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGAAGCCAAGAGTTTTAGGTCGAAAAACTTGAAGCAATCCTTAGCAAAATTGAACGATGAAAATCTACTGAAGCGGGTAGAACAATTACTGGAAACTCCTGTACACTGGAGGATGCCTAGGATAGAAGCTCTAAACTTCATCAACATATACCAAAGGGATGATTCTAGTAACCTGGCTCTGCTTGAGTTAGCCGAACTGGACTATAATCTTGTTCAATCATTCCCCTTACTATATAATTCCTCAAATATAAAACTAAATGAGAAGGAATCTAATTCATTAGAAAAAGAGAATCCAAATAATATAACTTTTGCTTATGTATTGCAGTGGGAAAATCTTTGCAAGTCGTATATGATCGAAGCACGGTGGTTTTATAGCCGATACACACCTACTCTGGAGGAGTATTTGGAGAATGCATGGACTTCAGCTGAGAACGAGAGAGGAGATGTTGCGAAATCCGTTCAGTGCTACATGGAAGAAAAAGGCATATCGGAAGAAGAAGCACATAAAAACATTAAGGGCTTAATCTGCTATTCATGGAAGAAAATCAATGAAGATAGTGCAAAAGCTACTATACCAAAATCCATTGTAAACCTGTCCTTGAATATGGCACGGACTGCACACTGCATTTTTCAACATGGTGACGGTATTGGGACATCGGTTGGGGTGACTAAAGATCGTTTAATCTCTTTGATTGCAAATCCTATCCCTATTGATGACGATAATCATGTCACACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

455

Amino Acids

51.47

Weight (kDa)

5.99

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 72 - 239 9.1e-38 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 301 - 352 2.9e-10 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 303 - 351 8.7e-09 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 352 - 391 2.9e-08 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 352 - 391 2e-07 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 373, 703
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 2 cut(s) 719, 1035
AfaI GTAC 6 cut(s) 58, 99, 325, 442, 451, 732
AflII CTTAAG 1 cut(s) 553
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 3 cut(s) 408, 610, 801
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 9 cut(s) 194, 308, 355, 416, 519, 552, 758, 1055, 1196
AluI AGCT 9 cut(s) 194, 308, 355, 416, 519, 552, 758, 1055, 1196
AlwI GGATC 1 cut(s) 400
ApeKI GCWGC 2 cut(s) 370, 413
ApoI RAATTY 1 cut(s) 142
Asp700I GAANNNNTTC 1 cut(s) 621
AspA2I CCTAGG 1 cut(s) 746
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 1280, 1306
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 746
BbvI GCAGC 2 cut(s) 382, 425
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 3 cut(s) 410, 612, 803
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 7 cut(s) 54, 60, 77, 191, 447, 747, 795
BfmI CTRYAG 1 cut(s) 417
BfrI CTTAAG 1 cut(s) 553
BisI GCNGC 2 cut(s) 371, 414
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 2 cut(s) 372, 415
BmcAI AGTACT 3 cut(s) 58, 325, 442
Bme1390I CCNGG 3 cut(s) 410, 612, 803
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 219, 220
BmrFI CCNGG 3 cut(s) 410, 612, 803
BmsI GCATC 3 cut(s) 325, 357, 732
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 3 cut(s) 647, 757, 1043
Bpu10I CCTNAGC 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 601, 746
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bse1I ACTGG 5 cut(s) 83, 438, 723, 740, 831
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 3 cut(s) 410, 612, 803
BseDI CCNNGG 2 cut(s) 601, 746
BseGI GGATG 5 cut(s) 149, 202, 544, 747, 793
BseJI GATNNNNATC 1 cut(s) 690
BseMII CTCAG 2 cut(s) 534, 1047
BseNI ACTGG 5 cut(s) 83, 438, 723, 740, 831
BseRI GAGGAG 4 cut(s) 10, 13, 1040, 1083
BseXI GCAGC 2 cut(s) 382, 425
BsgI GTGCAG 1 cut(s) 1230
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 3 cut(s) 204, 585, 1294
BsmFI GGGAC 3 cut(s) 204, 585, 1294
BsmI GAATGC 3 cut(s) 78, 612, 1045
Bsp1407I TGTACA 2 cut(s) 97, 730
Bsp143I GATC 3 cut(s) 405, 981, 1303
BspACI CCGC 2 cut(s) 373, 703
BspCNI CTCAG 2 cut(s) 533, 1048
BspLI GGNNCC 2 cut(s) 219, 220
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 400
BspTI CTTAAG 1 cut(s) 553
BsrGI TGTACA 2 cut(s) 97, 730
BsrI ACTGG 5 cut(s) 83, 438, 723, 740, 831
BssECI CCNNGG 2 cut(s) 601, 746
BssMI GATC 3 cut(s) 405, 981, 1303
BssT1I CCWWGG 2 cut(s) 601, 746
Bst2UI CCWGG 3 cut(s) 410, 612, 803
Bst4CI ACNGT 2 cut(s) 993, 1274
BstAFI CTTAAG 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 1244
BstAUI TGTACA 2 cut(s) 97, 730
BstC8I GCNNGC 2 cut(s) 78, 357
BstDEI CTNAG 4 cut(s) 494, 520, 670, 1056
BstF5I GGATG 5 cut(s) 149, 202, 544, 747, 793
BstKTI GATC 3 cut(s) 408, 984, 1306
BstMBI GATC 3 cut(s) 405, 981, 1303
BstMWI GCNNNNNNNGC 3 cut(s) 549, 1155, 1244
BstNI CCWGG 3 cut(s) 410, 612, 803
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 408, 610, 801
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 382, 425
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BtsCI GGATG 5 cut(s) 149, 202, 544, 747, 793
BtsI GCAGTG 2 cut(s) 959, 1249
BtsIMutI CAGTG 4 cut(s) 733, 959, 1097, 1249
Cac8I GCNNGC 2 cut(s) 78, 357
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 6 cut(s) 57, 98, 324, 441, 450, 731
CviAII CATG 8 cut(s) 95, 223, 257, 1044, 1099, 1164, 1265, 1355
CviQI GTAC 6 cut(s) 57, 98, 324, 441, 450, 731
DdeI CTNAG 4 cut(s) 494, 520, 670, 1056
DpnI GATC 3 cut(s) 407, 983, 1305
DpnII GATC 3 cut(s) 405, 981, 1303
DraI TTTAAA 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 601, 746
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 719, 1035
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 408, 610, 801
EcoT14I CCWWGG 2 cut(s) 601, 746
EcoT22I ATGCAT 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 601, 746
FaeI CATG 8 cut(s) 98, 226, 260, 1047, 1102, 1167, 1268, 1358
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 653, 685
FaqI GGGAC 3 cut(s) 204, 585, 1294
FatI CATG 8 cut(s) 94, 222, 256, 1043, 1098, 1163, 1264, 1354
FauI CCCGC 1 cut(s) 696
FauNDI CATATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 371, 414
FokI GGATG 5 cut(s) 136, 189, 551, 754, 800
Fsp4HI GCNGC 2 cut(s) 371, 414
FspBI CTAG 7 cut(s) 54, 60, 77, 191, 447, 747, 795
GluI GCNGC 2 cut(s) 371, 414
GsuI CTGGAG 3 cut(s) 647, 757, 1043
HapII CCGG 1 cut(s) 170
Hin1II CATG 8 cut(s) 98, 226, 260, 1047, 1102, 1167, 1268, 1358
HindIII AAGCTT 2 cut(s) 306, 550
HinfI GANTC 7 cut(s) 4, 233, 244, 260, 791, 896, 919
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 1280, 1306
Hpy166II GTNNAC 3 cut(s) 42, 733, 1219
Hpy188I TCNGA 2 cut(s) 523, 1120
Hpy188III TCNNGA 3 cut(s) 241, 626, 1022
Hpy8I GTNNAC 3 cut(s) 42, 733, 1219
HpyAV CCTTC 3 cut(s) 139, 247, 886
HpyCH4III ACNGT 2 cut(s) 993, 1274
HpyF10VI GCNNNNNNNGC 3 cut(s) 549, 1155, 1244
HpyF3I CTNAG 4 cut(s) 494, 520, 670, 1056
Hsp92II CATG 8 cut(s) 98, 226, 260, 1047, 1102, 1167, 1268, 1358
KflI GGGWCCC 1 cut(s) 218
Kzo9I GATC 3 cut(s) 405, 981, 1303
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 382, 425
LweI GCATC 3 cut(s) 325, 357, 732
MaeI CTAG 7 cut(s) 54, 60, 77, 191, 447, 747, 795
MaeIII GTNAC 5 cut(s) 421, 797, 1268, 1294, 1357
MalI GATC 3 cut(s) 407, 983, 1305
MboI GATC 3 cut(s) 405, 981, 1303
MboII GAAGA 9 cut(s) 426, 455, 557, 629, 1115, 1133, 1136, 1180, 1193
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 405
MluCI AATT 8 cut(s) 142, 275, 482, 513, 677, 713, 865, 901
MlyI GAGTC 2 cut(s) 13, 238
Mph1103I ATGCAT 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 7 cut(s) 68, 350, 534, 554, 1143, 1151, 1310
MspA1I CMGCKG 2 cut(s) 373, 1055
MspCI CTTAAG 1 cut(s) 553
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 410, 612, 803
MunI CAATTG 1 cut(s) 275
Mva1269I GAATGC 3 cut(s) 78, 612, 1045
MvaI CCWGG 3 cut(s) 410, 612, 803
MwoI GCNNNNNNNGC 3 cut(s) 549, 1155, 1244
NdeI CATATG 1 cut(s) 265
NdeII GATC 3 cut(s) 405, 981, 1303
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 8 cut(s) 98, 226, 260, 1047, 1102, 1167, 1268, 1358
NlaIV GGNNCC 2 cut(s) 219, 220
NmuCI GTSAC 3 cut(s) 1268, 1294, 1357
NsiI ATGCAT 1 cut(s) 1045
NspI RCATGY 1 cut(s) 98
PctI GAATGC 3 cut(s) 78, 612, 1045
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 5 cut(s) 233, 260, 791, 896, 919
PkrI GCNGC 2 cut(s) 372, 415
PleI GAGTC 2 cut(s) 12, 238
PpsI GAGTC 2 cut(s) 12, 238
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 3 cut(s) 408, 610, 801
PspGI CCWGG 3 cut(s) 408, 610, 801
PspN4I GGNNCC 2 cut(s) 219, 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 1055
RsaI GTAC 6 cut(s) 58, 99, 325, 442, 451, 732
RsaNI GTAC 6 cut(s) 57, 98, 324, 441, 450, 731
SaqAI TTAA 7 cut(s) 68, 350, 534, 554, 1143, 1151, 1310
SatI GCNGC 2 cut(s) 371, 414
Sau3AI GATC 3 cut(s) 405, 981, 1303
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 3 cut(s) 58, 325, 442
SchI GAGTC 2 cut(s) 13, 238
ScrFI CCNGG 3 cut(s) 410, 612, 803
SfaNI GCATC 3 cut(s) 325, 357, 732
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 553, 812
SmoI CTYRAG 2 cut(s) 553, 812
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 8 cut(s) 142, 275, 482, 513, 677, 713, 865, 901
SsiI CCGC 2 cut(s) 373, 703
SspMI CTAG 7 cut(s) 54, 60, 77, 191, 447, 747, 795
StyD4I CCNGG 3 cut(s) 408, 610, 801
StyI CCWWGG 2 cut(s) 601, 746
TaaI ACNGT 2 cut(s) 993, 1274
TaqI TCGA 5 cut(s) 242, 320, 344, 650, 984
TasI AATT 8 cut(s) 142, 275, 482, 513, 677, 713, 865, 901
TatI WGTACW 5 cut(s) 56, 97, 323, 440, 730
TfiI GAWTC 5 cut(s) 233, 260, 791, 896, 919
Tru1I TTAA 7 cut(s) 68, 350, 534, 554, 1143, 1151, 1310
Tru9I TTAA 7 cut(s) 68, 350, 534, 554, 1143, 1151, 1310
TscAI CASTG 4 cut(s) 740, 959, 1097, 1256
TseFI GTSAC 3 cut(s) 1268, 1294, 1357
TseI GCWGC 2 cut(s) 370, 413
Tsp45I GTSAC 3 cut(s) 1268, 1294, 1357
TspDTI ATGAA 8 cut(s) 121, 273, 603, 702, 757, 894, 1152, 1194
TspGWI ACGGA 2 cut(s) 1075, 1255
TspRI CASTG 4 cut(s) 740, 959, 1097, 1256
Vha464I CTTAAG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 7 cut(s) 54, 60, 77, 191, 447, 747, 795
ZrmI AGTACT 3 cut(s) 58, 325, 442
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.