Prupe.3G222300_v2.0.a1

synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
22272039 .. 22275403
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G222300.1

Sequence Viewer

Length: 1389 bp
ATGCAGTATGAATTACATGCCACACGATTGGAGAGTCTAAAGCAGAACGTTGCTGAAACGTTGCTGGCTGCATCCACCAGTAACAAAGGCGGCTCTGCCAGCACTTGTTCCGTTTTAAAGCTTATCGACTCAATGCAGCGGTTGGGAGTGGCCTACCATTTTGAGCAAGAGACCGATGCAGCTCTACTTAGTCTCGTTTCTTCGAGCACTCACGGTACCACAGATGATCTTCACACAGTTGCCTTGCAATTCCCGGATACTAAGAGACATGGCATCTCTATAGCCCAGCAAATAGTAGAGCAATCACTAGAAACCCCCCTGCGTTGGAGGATGCCAAGAATAGAAGCCCGGAACTTCATCGATATCTACGAAAGAGACAATTCTAAGAACCTGGCTTTGCTTGAATTGGCCAAGTTGGATTATAATCTCGTCCAATCAGTATATCAAATGGAGATAAAGGAGCTATCAAGGTGGTGGAGAGACTTGGATTTCAAAAACAAGGCAAGTTTCTCAAGGGATCGATTGATGGAGAACTACTTGTGGGCAATGGGGATCAATTATGAGCCCCGATTCTCAGAATGCAGGATTGGCCTCACCAAGTTTGTTTGCATATTAACAATAATTGATGACATGTATGATGTCTATGGATTTCTGGATGAGCTTGAGCACTATACACATGCAGTATGTCGATGGAATATGGAAGCAAAGGAGGAGCTTCCGGAGTACATGAAGCCAGTTTATGCTGCCATGCTCAAATTTGGCAACGAATTAGCTGATAAAGTTTTTAAAAATAATGGTTTGGACGTCCTCCCTTATATTAAGAAAGAGTGGGTAAGTCTTTGTAAATCATATTTGGTCGAGGCACGGTGGTTTTACAGAGGATACACACCAACTTTACAAGAGTACTTAGACAACGCATGGACTTCAGTGGGTGGCCCTGGTGCTCTTCTCCATGCTTATTTGTTGCAAGGATTAGGAAGCCACCTCACAAAAACTTCACTTGAGTCCTTTAAGCATGGCTCTGAAATGGTATATTGGTCATCTCTCATGACTCGACTTAGCGATGATTTGGGCACTTCCAAGGCTGAAAGTGAGAGAGGTGATGTGGCTAAAGCCGTAGAGTGTTACATGGAAGAAAAAGGCACATCTGAGGAAGAAGCACAGCACTACATAAACGATTTGATCTGCTATTCATGGAAGAAAATGAATGAGGAGAGTGCAAAAACTAGCTGGATACCAAAATCAATTGTAAAAATGTCACTCAATATGGCGCGGACTGCTCTATCTATCTTTCAACATGGCGATGGTATTGGAACTTCAATTGGGGTCACCAAACATCGTTTAATTTCTTTGATTGCAAGTCCTATTGCTATATTTCATGAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

52.87

Weight (kDa)

5.8

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AatII GACGTC 1 cut(s) 807
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 1273
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 3 cut(s) 90, 139, 1273
AclI AACGTT 2 cut(s) 48, 59
AclWI GGATC 2 cut(s) 525, 560
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 3 cut(s) 217, 725, 905
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 4 cut(s) 404, 493, 1295, 1320
AjnI CCWGG 2 cut(s) 390, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 7 cut(s) 121, 182, 463, 661, 715, 773, 1230
AluI AGCT 7 cut(s) 121, 182, 463, 661, 715, 773, 1230
Alw21I GWGCWC 3 cut(s) 209, 669, 946
Alw26I GTCTC 5 cut(s) 164, 197, 259, 369, 474
AlwI GGATC 2 cut(s) 525, 560
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 4 cut(s) 150, 408, 589, 934
ApeKI GCWGC 4 cut(s) 68, 136, 179, 743
ApoI RAATTY 1 cut(s) 755
Asp718I GGTACC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 1273
AspS9I GGNCC 1 cut(s) 935
AsuC2I CCSGG 2 cut(s) 254, 349
AsuHPI GGTGA 3 cut(s) 586, 1112, 1321
BaeGI GKGCMC 1 cut(s) 1076
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 567
BarI GAAGNNNNNNTAC 2 cut(s) 1300, 1332
Bbv12I GWGCWC 3 cut(s) 209, 669, 946
BbvI GCAGC 4 cut(s) 55, 148, 191, 730
BccI CCATC 3 cut(s) 520, 684, 1298
BceAI ACGGC 1 cut(s) 1100
BciT130I CCWGG 2 cut(s) 392, 939
BciVI GTATCC 3 cut(s) 250, 875, 1227
BcnI CCSGG 2 cut(s) 254, 349
BcoDI GTCTC 5 cut(s) 164, 197, 259, 369, 474
BfaI CTAG 3 cut(s) 308, 1227, 1387
BfmI CTRYAG 1 cut(s) 279
BfuI GTATCC 3 cut(s) 250, 875, 1227
BisI GCNGC 5 cut(s) 69, 91, 137, 180, 744
BlsI GCNGC 5 cut(s) 70, 92, 138, 181, 745
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 4 cut(s) 254, 349, 392, 939
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 4 cut(s) 254, 349, 392, 939
BmsI GCATC 4 cut(s) 80, 166, 282, 321
BpuEI CTTGAG 3 cut(s) 496, 683, 1022
BpuMI CCSGG 2 cut(s) 254, 349
Bsa29I ATCGAT 2 cut(s) 360, 520
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 937, 1080
BsaWI WCCGGW 1 cut(s) 718
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 78, 734
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 2 cut(s) 392, 939
BseCI ATCGAT 2 cut(s) 360, 520
BseDI CCNNGG 2 cut(s) 937, 1080
BseGI GGATG 3 cut(s) 71, 336, 661
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 588, 1140
BseNI ACTGG 2 cut(s) 78, 734
BseRI GAGGAG 2 cut(s) 725, 1226
BseSI GKGCMC 1 cut(s) 1076
BseXI GCAGC 4 cut(s) 55, 148, 191, 730
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 1273
BshFI GGCC 4 cut(s) 152, 410, 591, 936
BshNI GGYRCC 1 cut(s) 215
BshVI ATCGAT 2 cut(s) 360, 520
BsiHKAI GWGCWC 3 cut(s) 209, 669, 946
BsiSI CCGG 3 cut(s) 254, 349, 719
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 5 cut(s) 164, 197, 259, 369, 474
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 4 cut(s) 152, 410, 591, 936
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 5 cut(s) 209, 567, 669, 946, 1076
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 226, 517, 552, 1182
BspACI CCGC 3 cut(s) 90, 139, 1273
BspANI GGCC 4 cut(s) 152, 410, 591, 936
BspCNI CTCAG 2 cut(s) 587, 1141
BspDI ATCGAT 2 cut(s) 360, 520
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 1 cut(s) 1273
BspHI TCATGA 2 cut(s) 1047, 1378
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 2 cut(s) 525, 560
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 2 cut(s) 78, 734
BssECI CCNNGG 2 cut(s) 937, 1080
BssMI GATC 4 cut(s) 226, 517, 552, 1182
BssNI GRCGYC 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 1080
Bst2UI CCWGG 2 cut(s) 392, 939
Bst4CI ACNGT 3 cut(s) 215, 238, 867
Bst6I CTCTTC 1 cut(s) 951
BstACI GRCGYC 1 cut(s) 804
BstC8I GCNNGC 2 cut(s) 66, 100
BstDEI CTNAG 7 cut(s) 188, 261, 384, 574, 907, 1058, 1149
BstEII GGTNACC 1 cut(s) 1327
BstF5I GGATG 3 cut(s) 71, 336, 661
BstFNI CGCG 1 cut(s) 1273
BstHHI GCGC 1 cut(s) 1273
BstKTI GATC 4 cut(s) 229, 520, 555, 1185
BstMAI GTCTC 5 cut(s) 164, 197, 259, 369, 474
BstMBI GATC 4 cut(s) 226, 517, 552, 1182
BstMWI GCNNNNNNNGC 3 cut(s) 99, 588, 1277
BstNI CCWGG 2 cut(s) 392, 939
BstNSI RCATGY 3 cut(s) 20, 634, 680
BstPI GGTNACC 1 cut(s) 1327
BstSCI CCNGG 4 cut(s) 252, 347, 390, 937
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 1076
BstUI CGCG 1 cut(s) 1273
BstV1I GCAGC 4 cut(s) 55, 148, 191, 730
BstXI CCANNNNNNTGG 1 cut(s) 28
Bsu15I ATCGAT 2 cut(s) 360, 520
BsuI GTATCC 3 cut(s) 250, 875, 1227
BsuRI GGCC 4 cut(s) 152, 410, 591, 936
BsuTUI ATCGAT 2 cut(s) 360, 520
BtgZI GCGATG 2 cut(s) 1077, 1317
BtsCI GGATG 3 cut(s) 71, 336, 661
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 2 cut(s) 66, 100
CciI TCATGA 2 cut(s) 1047, 1378
CfoI GCGC 1 cut(s) 1273
Cfr13I GGNCC 1 cut(s) 935
ClaI ATCGAT 2 cut(s) 360, 520
Csp6I GTAC 3 cut(s) 216, 724, 904
CviQI GTAC 3 cut(s) 216, 724, 904
DdeI CTNAG 7 cut(s) 188, 261, 384, 574, 907, 1058, 1149
DpnI GATC 4 cut(s) 228, 519, 554, 1184
DpnII GATC 4 cut(s) 226, 517, 552, 1182
DraI TTTAAA 2 cut(s) 117, 787
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Eco130I CCWWGG 1 cut(s) 1080
Eco24I GRGCYC 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 909
Eco91I GGTNACC 1 cut(s) 1327
EcoO65I GGTNACC 1 cut(s) 1327
EcoRII CCWGG 2 cut(s) 390, 937
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 1080
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 1080
Fnu4HI GCNGC 5 cut(s) 69, 91, 137, 180, 744
FokI GGATG 3 cut(s) 58, 343, 668
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 5 cut(s) 69, 91, 137, 180, 744
FspBI CTAG 3 cut(s) 308, 1227, 1387
GlaI GCGC 1 cut(s) 1272
GluI GCNGC 5 cut(s) 69, 91, 137, 180, 744
GsaI CCCAGC 1 cut(s) 289
HaeIII GGCC 4 cut(s) 152, 410, 591, 936
HapII CCGG 3 cut(s) 254, 349, 719
HhaI GCGC 1 cut(s) 1273
Hin1I GRCGYC 1 cut(s) 804
Hin6I GCGC 1 cut(s) 1271
HinP1I GCGC 1 cut(s) 1271
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 5 cut(s) 34, 128, 570, 1004, 1051
HpaII CCGG 3 cut(s) 254, 349, 719
HphI GGTGA 3 cut(s) 586, 1112, 1321
Hpy188I TCNGA 3 cut(s) 577, 1024, 1150
Hpy188III TCNNGA 4 cut(s) 653, 719, 1048, 1379
HpyCH4III ACNGT 3 cut(s) 215, 238, 867
HpyCH4IV ACGT 3 cut(s) 48, 59, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 588, 1277
HpyF3I CTNAG 7 cut(s) 188, 261, 384, 574, 907, 1058, 1149
HpySE526I ACGT 3 cut(s) 48, 59, 804
Hsp92I GRCGYC 1 cut(s) 804
HspAI GCGC 1 cut(s) 1271
Kpn2I TCCGGA 1 cut(s) 718
KpnI GGTACC 1 cut(s) 219
Kzo9I GATC 4 cut(s) 226, 517, 552, 1182
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 2 cut(s) 460, 712
Lsp1109I GCAGC 4 cut(s) 55, 148, 191, 730
LweI GCATC 4 cut(s) 80, 166, 282, 321
MaeI CTAG 3 cut(s) 308, 1227, 1387
MaeII ACGT 3 cut(s) 48, 59, 804
MaeIII GTNAC 4 cut(s) 80, 1124, 1257, 1327
MalI GATC 4 cut(s) 228, 519, 554, 1184
MboI GATC 4 cut(s) 226, 517, 552, 1182
MboII GAAGA 6 cut(s) 192, 221, 938, 1145, 1166, 1210
MfeI CAATTG 2 cut(s) 1245, 1320
MhlI GDGCHC 5 cut(s) 209, 567, 669, 946, 1076
MlsI TGGCCA 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 4 cut(s) 43, 122, 1013, 1045
MmeI TCCRAC 2 cut(s) 305, 396
Mox20I TGGCCA 1 cut(s) 410
MroI TCCGGA 1 cut(s) 718
MscI TGGCCA 1 cut(s) 410
MseI TTAA 6 cut(s) 116, 614, 786, 819, 1011, 1343
MslI CAYNNNNRTG 1 cut(s) 1302
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 3 cut(s) 254, 349, 719
MspR9I CCNGG 4 cut(s) 254, 349, 392, 939
MunI CAATTG 2 cut(s) 1245, 1320
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 392, 939
MvnI CGCG 1 cut(s) 1273
MwoI GCNNNNNNNGC 3 cut(s) 99, 588, 1277
NciI CCSGG 2 cut(s) 254, 349
NdeII GATC 4 cut(s) 226, 517, 552, 1182
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 1257, 1327
NspI RCATGY 3 cut(s) 20, 634, 680
PagI TCATGA 2 cut(s) 1047, 1378
PciI ACATGT 1 cut(s) 630
PciSI GCTCTTC 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 570
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 5 cut(s) 70, 92, 138, 181, 745
PleI GAGTC 4 cut(s) 42, 122, 1012, 1045
PpsI GAGTC 4 cut(s) 42, 122, 1012, 1045
PscI ACATGT 1 cut(s) 630
PsiI TTATAA 1 cut(s) 423
Psp1406I AACGTT 2 cut(s) 48, 59
Psp6I CCWGG 2 cut(s) 390, 937
PspEI GGTNACC 1 cut(s) 1327
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 2 cut(s) 390, 937
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 935
RsaI GTAC 3 cut(s) 217, 725, 905
RsaNI GTAC 3 cut(s) 216, 724, 904
RseI CAYNNNNRTG 1 cut(s) 1302
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 6 cut(s) 116, 614, 786, 819, 1011, 1343
SatI GCNGC 5 cut(s) 69, 91, 137, 180, 744
Sau3AI GATC 4 cut(s) 226, 517, 552, 1182
Sau96I GGNCC 1 cut(s) 935
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 4 cut(s) 43, 122, 1013, 1045
ScrFI CCNGG 4 cut(s) 254, 349, 392, 939
SduI GDGCHC 5 cut(s) 209, 567, 669, 946, 1076
SfaNI GCATC 4 cut(s) 80, 166, 282, 321
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 1302
SmlI CTYRAG 3 cut(s) 511, 662, 1001
SmoI CTYRAG 3 cut(s) 511, 662, 1001
SsiI CCGC 3 cut(s) 90, 139, 1273
SspMI CTAG 3 cut(s) 308, 1227, 1387
StyD4I CCNGG 4 cut(s) 252, 347, 390, 937
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 3 cut(s) 215, 238, 867
TaiI ACGT 3 cut(s) 51, 62, 807
TaqI TCGA 7 cut(s) 126, 203, 360, 520, 688, 858, 1054
TaqII GACCGA 1 cut(s) 188
TatI WGTACW 2 cut(s) 723, 903
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 570
Tru1I TTAA 6 cut(s) 116, 614, 786, 819, 1011, 1343
Tru9I TTAA 6 cut(s) 116, 614, 786, 819, 1011, 1343
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 2 cut(s) 1257, 1327
TseI GCWGC 4 cut(s) 68, 136, 179, 743
Tsp45I GTSAC 2 cut(s) 1257, 1327
TspDTI ATGAA 6 cut(s) 24, 346, 743, 1182, 1220, 1367
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 933
XapI RAATTY 1 cut(s) 755
XceI RCATGY 3 cut(s) 20, 634, 680
XspI CTAG 3 cut(s) 308, 1227, 1387
ZraI GACGTC 1 cut(s) 805
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.