Rmu_sc0008148.1_g000036

synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008148.1
Physical Location & Seq
Forward (+)
151235 .. 155502
4268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008148.1_g000036.1.cds

Sequence Viewer

Length: 1755 bp
atgcctcgggttatgtctcaatctcaacgtcgatcagctcaataccatcctaccatttggggtcccgacctcatcgattccttcaccactcaatacacttatgaatcacatgccacacgtctggagggtctaaagaagaatgtagccaaagccttagtcacatccagtactcaagacgatgcttgctccattttgaagcttatagcctctgtccagcggttgggagtagcataccacttccgaaatgagatcaaatcagctctagatactcttctttcttctactagcacccttagtagcacaaatgatcttcatacagctgccttgcaatttcaaatacaaagagaaaatggtatatcagtaagctcagatttgtttaacaagtttagaagtggagaaggaagcttcaaagatagcttaagcaatgacgtggagggacttttgagtttgtatgaagcctcacatcttggaatgccaggagaagatgttctggaggaagccaagagatttagttcaaaaaatttgaaacaatccatggcaataatattgaacgacaataatctactgaagcaagtagagaaatcactgcatacccctgtacactggaggatgccgaggatagaagctctgaacttcatcgatatgtaccaaagggaggactctaagaacctggcactgctggagtggtggagagagttggattttaaatcgaaggcaagtttctcaagggacagactgatggagaactacttgtgggcaatggggattagttatgagccccaatcctcagaatgcaggataggcctcaccaagtttgtgtgcatattaacagtcattgatgacatgtatgatgtatatggattcctggatgagcttgagtgctttacagatgcagtaattcaagggaggagaggcggagattttctgggtttgattcgaatcgagaggcagagagagatcgagagggcggagaggcggagatttctgggttcgagccttcgagccttcgaggcctcgaggggcagggggctgagggaaagaccgaaagagtatcccttatgccctttaggatggactgtggaagcaaaggagaaacttcccgagtacatgaagccgatctatattgccatgctcgattttggcaatgaattgtctgacaacgcattcaaaaatactggtttaaaccccctcccttatactaagaacgagtgggttaatctttgtaaagcctatatggtggaagcacggtggttctatggcggatacacaccaactttagaagagtatttaaagaatgcatggacttcagtgggtggtcctggagcaatgctccatgcttatttgttaaccgaaggatgccaactaacagaaacttcactcgagtcctttaaccatggctctcagctgatatattggtcatccatcttgactcgactcagtgacgatttgggcacttccaaggctgagggcgagagaggtgatgtcacaaaatctattcagtgctacatggaagaaaaaggtgcatcggaagaagaagcacaagattatataaagggtttaatcagctatgcatggaagaaaatcaaccaagagagtgccaaaacaagcataccaaaatcccttgtaaacctgtctctgaatatggctcggactgctcactacatttttgaacatggggatagtattggaaactcaattggggtgactaaggaacgtttgatctctttgattgcaaatcctatccccctcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

66.37

Weight (kDa)

5.99

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1015
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 5 cut(s) 217, 915, 968, 976, 1260
AclI AACGTT 1 cut(s) 1714
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 2 cut(s) 587, 1290
AfaI GTAC 4 cut(s) 169, 600, 647, 1106
AfiI CCNNNNNNNGG 2 cut(s) 220, 655
AflII CTTAAG 1 cut(s) 418
AflIII ACRYGT 2 cut(s) 116, 843
AgsI TTSAA 9 cut(s) 196, 335, 409, 516, 526, 550, 902, 1168, 1670
AjiI CACGTC 2 cut(s) 119, 430
AjnI CCWGG 4 cut(s) 475, 669, 864, 1318
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
Alw26I GTCTC 2 cut(s) 21, 1638
Ama87I CYCGRG 4 cut(s) 6, 1015, 1100, 1379
AoxI GGCC 2 cut(s) 802, 1011
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 520
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 62, 1316
AsuHPI GGTGA 4 cut(s) 76, 799, 1490, 1714
AsuII TTCGAA 1 cut(s) 937
AvaI CYCGRG 4 cut(s) 6, 1015, 1100, 1379
AvaII GGWCC 2 cut(s) 62, 1316
BaeGI GKGCMC 1 cut(s) 1454
BanII GRGCYC 1 cut(s) 780
BbvCI CCTCAGC 2 cut(s) 1031, 1464
BbvI GCAGC 1 cut(s) 307
BccI CCATC 4 cut(s) 54, 733, 1065, 1430
BciT130I CCWGG 4 cut(s) 477, 671, 866, 1320
BciVI GTATCC 2 cut(s) 1062, 1256
BcoDI GTCTC 2 cut(s) 21, 1638
BfaI CTAG 2 cut(s) 263, 285
BfrI CTTAAG 1 cut(s) 418
BfuI GTATCC 2 cut(s) 1062, 1256
BglI GCCNNNNNGGC 1 cut(s) 1010
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 477, 671, 866, 1320
Bme18I GGWCC 2 cut(s) 62, 1316
BmeT110I CYCGRG 4 cut(s) 6, 1015, 1100, 1379
BmgBI CACGTC 2 cut(s) 119, 430
BmgT120I GGNCC 2 cut(s) 62, 1316
BmiI GGNNCC 2 cut(s) 63, 64
BmrFI CCNGG 4 cut(s) 477, 671, 866, 1320
BmsI GCATC 5 cut(s) 169, 600, 880, 1346, 1532
BplI GAGNNNNNCTC 2 cut(s) 1314, 1346
BpmI CTGGAG 5 cut(s) 143, 512, 625, 701, 1341
Bpu10I CCTNAGC 2 cut(s) 1031, 1464
Bpu14I TTCGAA 1 cut(s) 937
BpuEI CTTGAG 3 cut(s) 156, 709, 896
Bsa29I ATCGAT 2 cut(s) 75, 639
BsaBI GATNNNNATC 1 cut(s) 938
BsaJI CCNNGG 5 cut(s) 5, 534, 614, 1393, 1458
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 655
Bse1I ACTGG 3 cut(s) 165, 608, 1180
Bse3DI GCAATG 4 cut(s) 430, 765, 1150, 1332
Bse8I GATNNNNATC 1 cut(s) 938
BseBI CCWGG 4 cut(s) 477, 671, 866, 1320
BseCI ATCGAT 2 cut(s) 75, 639
BseDI CCNNGG 5 cut(s) 5, 534, 614, 1393, 1458
BseGI GGATG 7 cut(s) 46, 161, 615, 874, 1076, 1361, 1418
BseJI GATNNNNATC 1 cut(s) 938
BseLI CCNNNNNNNGG 2 cut(s) 220, 655
BseMI GCAATG 4 cut(s) 430, 765, 1150, 1332
BseMII CTCAG 6 cut(s) 381, 801, 1022, 1415, 1450, 1455
BseNI ACTGG 3 cut(s) 165, 608, 1180
BseRI GAGGAG 1 cut(s) 922
BseSI GKGCMC 1 cut(s) 1454
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 2 cut(s) 804, 1013
BshVI ATCGAT 2 cut(s) 75, 639
BsiHKCI CYCGRG 4 cut(s) 6, 1015, 1100, 1379
BslFI GGGAC 3 cut(s) 48, 450, 743
BslI CCNNNNNNNGG 2 cut(s) 220, 655
BsmAI GTCTC 2 cut(s) 21, 1638
BsmFI GGGAC 3 cut(s) 48, 450, 743
BsmI GAATGC 4 cut(s) 477, 797, 1163, 1300
BsnI GGCC 2 cut(s) 804, 1013
BsoBI CYCGRG 4 cut(s) 6, 1015, 1100, 1379
Bsp119I TTCGAA 1 cut(s) 937
Bsp1286I GDGCHC 2 cut(s) 780, 1454
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
Bsp19I CCATGG 2 cut(s) 534, 1393
BspACI CCGC 5 cut(s) 217, 915, 968, 976, 1260
BspANI GGCC 2 cut(s) 804, 1013
BspCNI CTCAG 6 cut(s) 380, 800, 1023, 1414, 1449, 1456
BspDI ATCGAT 2 cut(s) 75, 639
BspLI GGNNCC 2 cut(s) 63, 64
BspT104I TTCGAA 1 cut(s) 937
BspTI CTTAAG 1 cut(s) 418
BsrDI GCAATG 4 cut(s) 430, 765, 1150, 1332
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 3 cut(s) 165, 608, 1180
BssECI CCNNGG 5 cut(s) 5, 534, 614, 1393, 1458
BssMI GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
BssT1I CCWWGG 3 cut(s) 534, 1393, 1458
Bst2UI CCWGG 4 cut(s) 477, 671, 866, 1320
Bst4CI ACNGT 3 cut(s) 832, 1078, 1248
Bst6I CTCTTC 2 cut(s) 276, 1275
BstAFI CTTAAG 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 598
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 534, 1393
BstF5I GGATG 7 cut(s) 46, 161, 615, 874, 1076, 1361, 1418
BstKTI GATC 6 cut(s) 35, 252, 310, 960, 1119, 1722
BstMAI GTCTC 2 cut(s) 21, 1638
BstMBI GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
BstMWI GCNNNNNNNGC 3 cut(s) 801, 1010, 1652
BstNI CCWGG 4 cut(s) 477, 671, 866, 1320
BstNSI RCATGY 2 cut(s) 113, 847
BstSCI CCNGG 4 cut(s) 475, 669, 864, 1318
BstSLI GKGCMC 1 cut(s) 1454
BstV1I GCAGC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 121
Bsu15I ATCGAT 2 cut(s) 75, 639
BsuI GTATCC 2 cut(s) 1062, 1256
BsuRI GGCC 2 cut(s) 804, 1013
BsuTUI ATCGAT 2 cut(s) 75, 639
BtgI CCRYGG 2 cut(s) 534, 1393
BtrI CACGTC 2 cut(s) 119, 430
BtsCI GGATG 7 cut(s) 46, 161, 615, 874, 1076, 1361, 1418
BtsI GCAGTG 2 cut(s) 584, 674
BtsIMutI CAGTG 6 cut(s) 584, 601, 674, 1314, 1444, 1505
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 62, 1316
ClaI ATCGAT 2 cut(s) 75, 639
Csp6I GTAC 4 cut(s) 168, 599, 646, 1105
CviQI GTAC 4 cut(s) 168, 599, 646, 1105
DpnI GATC 6 cut(s) 34, 251, 309, 959, 1118, 1721
DpnII GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
DraI TTTAAA 3 cut(s) 706, 1182, 1290
Eam1104I CTCTTC 2 cut(s) 276, 1275
EarI CTCTTC 2 cut(s) 276, 1275
EciI GGCGGA 4 cut(s) 930, 983, 991, 1275
Eco130I CCWWGG 3 cut(s) 534, 1393, 1458
Eco147I AGGCCT 2 cut(s) 804, 1013
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 2 cut(s) 62, 1316
Eco57I CTGAAG 2 cut(s) 587, 1290
Eco88I CYCGRG 4 cut(s) 6, 1015, 1100, 1379
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 4 cut(s) 475, 669, 864, 1318
EcoT14I CCWWGG 3 cut(s) 534, 1393, 1458
EcoT22I ATGCAT 2 cut(s) 1300, 1573
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 3 cut(s) 534, 1393, 1458
FaqI GGGAC 3 cut(s) 48, 450, 743
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 7 cut(s) 33, 148, 622, 881, 1083, 1368, 1405
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 263, 285
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 5 cut(s) 143, 512, 625, 701, 1341
HaeIII GGCC 2 cut(s) 804, 1013
HincII GTYRAC 1 cut(s) 1347
HindII GTYRAC 1 cut(s) 1347
HindIII AAGCTT 2 cut(s) 197, 403
HinfI GANTC 9 cut(s) 77, 104, 659, 861, 934, 939, 1382, 1429, 1434
HpaI GTTAAC 1 cut(s) 1347
HphI GGTGA 4 cut(s) 76, 799, 1490, 1714
Hpy166II GTNNAC 3 cut(s) 601, 1347, 1627
Hpy188I TCNGA 9 cut(s) 242, 370, 630, 790, 1156, 1528, 1638, 1650, 1751
Hpy188III TCNNGA 9 cut(s) 65, 122, 173, 263, 491, 943, 961, 1100, 1426
Hpy8I GTNNAC 3 cut(s) 601, 1347, 1627
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 6 cut(s) 91, 392, 706, 1007, 1015, 1346
HpyCH4III ACNGT 3 cut(s) 832, 1078, 1248
HpyCH4IV ACGT 4 cut(s) 28, 118, 429, 1714
HpyCH4V TGCA 9 cut(s) 328, 589, 795, 822, 893, 1298, 1523, 1571, 1733
HpyF10VI GCNNNNNNNGC 3 cut(s) 801, 1010, 1652
HpySE526I ACGT 4 cut(s) 28, 118, 429, 1714
KflI GGGWCCC 1 cut(s) 62
KspAI GTTAAC 1 cut(s) 1347
Kzo9I GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
LmnI GCTCC 3 cut(s) 191, 1322, 1335
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 5 cut(s) 169, 600, 880, 1346, 1532
MaeI CTAG 2 cut(s) 263, 285
MaeII ACGT 4 cut(s) 28, 118, 429, 1714
MaeIII GTNAC 4 cut(s) 157, 1439, 1483, 1702
MalI GATC 6 cut(s) 34, 251, 309, 959, 1118, 1721
MboI GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
MfeI CAATTG 1 cut(s) 1695
MhlI GDGCHC 2 cut(s) 780, 1454
MluCI AATT 5 cut(s) 329, 520, 897, 1148, 1695
MlyI GAGTC 4 cut(s) 653, 1391, 1423, 1428
MmeI TCCRAC 1 cut(s) 678
Mph1103I ATGCAT 2 cut(s) 1300, 1573
MroXI GAANNNNTTC 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 3 cut(s) 217, 320, 1405
MspCI CTTAAG 1 cut(s) 418
MspR9I CCNGG 4 cut(s) 477, 671, 866, 1320
MssI GTTTAAAC 1 cut(s) 1182
MunI CAATTG 1 cut(s) 1695
Mva1269I GAATGC 4 cut(s) 477, 797, 1163, 1300
MvaI CCWGG 4 cut(s) 477, 671, 866, 1320
MwoI GCNNNNNNNGC 3 cut(s) 801, 1010, 1652
NcoI CCATGG 2 cut(s) 534, 1393
NdeII GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
NlaIV GGNNCC 2 cut(s) 63, 64
NmeAIII GCCGAG 1 cut(s) 639
NmuCI GTSAC 4 cut(s) 157, 1439, 1483, 1702
NsiI ATGCAT 2 cut(s) 1300, 1573
NspI RCATGY 2 cut(s) 113, 847
NspV TTCGAA 1 cut(s) 937
PaeR7I CTCGAG 2 cut(s) 1015, 1379
PceI AGGCCT 2 cut(s) 804, 1013
PciI ACATGT 1 cut(s) 843
PctI GAATGC 4 cut(s) 477, 797, 1163, 1300
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 5 cut(s) 77, 104, 861, 934, 939
PflMI CCANNNNNTGG 1 cut(s) 220
PfoI TCCNGGA 2 cut(s) 864, 1318
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 4 cut(s) 653, 1390, 1423, 1428
PmeI GTTTAAAC 1 cut(s) 1182
PpsI GAGTC 4 cut(s) 653, 1390, 1423, 1428
PpuMI RGGWCCY 1 cut(s) 62
PscI ACATGT 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 1714
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 4 cut(s) 475, 669, 864, 1318
PspGI CCWGG 4 cut(s) 475, 669, 864, 1318
PspN4I GGNNCC 2 cut(s) 63, 64
PspPI GGNCC 2 cut(s) 62, 1316
PspPPI RGGWCCY 1 cut(s) 62
PspXI VCTCGAGB 2 cut(s) 1015, 1379
PvuII CAGCTG 2 cut(s) 320, 1405
RsaI GTAC 4 cut(s) 169, 600, 647, 1106
RsaNI GTAC 4 cut(s) 168, 599, 646, 1105
RseI CAYNNNNRTG 1 cut(s) 641
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 6 cut(s) 32, 249, 307, 957, 1116, 1719
Sau96I GGNCC 2 cut(s) 62, 1316
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 4 cut(s) 653, 1391, 1423, 1428
ScrFI CCNGG 4 cut(s) 477, 671, 866, 1320
SduI GDGCHC 2 cut(s) 780, 1454
SfaNI GCATC 5 cut(s) 169, 600, 880, 1346, 1532
Sfr274I CTCGAG 2 cut(s) 1015, 1379
SfuI TTCGAA 1 cut(s) 937
SinI GGWCC 2 cut(s) 62, 1316
SlaI CTCGAG 2 cut(s) 1015, 1379
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 6 cut(s) 171, 418, 724, 875, 1015, 1379
SmoI CTYRAG 6 cut(s) 171, 418, 724, 875, 1015, 1379
Sse9I AATT 5 cut(s) 329, 520, 897, 1148, 1695
SseBI AGGCCT 2 cut(s) 804, 1013
SsiI CCGC 5 cut(s) 217, 915, 968, 976, 1260
SspI AATATT 1 cut(s) 546
SspMI CTAG 2 cut(s) 263, 285
StuI AGGCCT 2 cut(s) 804, 1013
StyD4I CCNGG 4 cut(s) 475, 669, 864, 1318
StyI CCWWGG 3 cut(s) 534, 1393, 1458
TaaI ACNGT 3 cut(s) 832, 1078, 1248
TaiI ACGT 4 cut(s) 31, 121, 432, 1717
TaqII GACCGA 1 cut(s) 1057
TasI AATT 5 cut(s) 329, 520, 897, 1148, 1695
TatI WGTACW 3 cut(s) 167, 598, 1104
TfiI GAWTC 5 cut(s) 77, 104, 861, 934, 939
TscAI CASTG 6 cut(s) 591, 608, 681, 1314, 1444, 1505
TseFI GTSAC 4 cut(s) 157, 1439, 1483, 1702
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 4 cut(s) 157, 1439, 1483, 1702
TspDTI ATGAA 6 cut(s) 117, 302, 468, 625, 1124, 1161
TspRI CASTG 6 cut(s) 591, 608, 681, 1314, 1444, 1505
Van91I CCANNNNNTGG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 62, 1316
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 2 cut(s) 113, 847
XhoI CTCGAG 2 cut(s) 1015, 1379
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 263, 285
ZrmI AGTACT 1 cut(s) 169
Zsp2I ATGCAT 2 cut(s) 1300, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.