Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014846.1

Orthogroup ID

OG0002548

Physical Location & Seq

Genomic Coordinates Forward (+)

8252 .. 9004

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014846.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgaactggcaacacttcgcattattcttgttgcagcatgaatcatatgcctcacaattggagggtctaaagcagattgtttctaaagctttacttgtgtcgagtactaaagacgatgcttgttcgattttaaagctcgcagacttgatgcagcggttaggagtagcataccacttcaaaaaggagatccaggcagctatagttactcttgtttcttccagtactgctagtaccacaaccaatcttcaaaaagtttctttgcaatttcaaatactaagacaatatggtatttcaattagctcaggtaatgtactatacctacatccatataaaaagggccatacatatatatactcacaagtgacattctgtggccctgatgttgacatgttactttcaaactccacagatttgttttttaaggatggcgaagaaagcttaagcaacgatgtggagggacttctgtgtttgtatgaagcctcacaccttggaatgccaggagaagatgttctggaggaagccaagagttttaggtcgaaaaacttgaagcaatccttagcaaaattgaacgatgaaaatctactgaagcgggtagaacaattactggaaattcctgtacactggaggatgcctaggatagaagctctaaacttcatcaacatataccaaagggatgattctagtaacctggctctgcttgagttagccgaactggactataatcttgttcaatcagtctatcaaatgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

250

Amino Acids

28.39

Weight (kDa)

5.65

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43710 FvH4_6g43710 FvH4_6g43720 FvH4_6g43730
malus_domestica	MD17G1091300.v1.1
prunus_persica	Prupe.3G222200_v2.0.a1 Prupe.3G222300_v2.0.a1
pyrus_communis	pycom17g08820 pycom17g08830 pycom17g08840 pycom17g08850
rosa_chinensis	RchiOBHm_Chr2g0160361 RchiOBHm_Chr2g0160421 RchiOBHm_Chr2g0160441
rosa_laevigata	RLG00000021214 RLG00000021215
rosa_multiflora	Rmu_sc0008148.1_g000036 Rmu_sc0014846.1_g000003 Rmu_sc0017778.1_g000001 Rmu_ssc0000110.1_g000002 Rmu_ssc0000110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00089810 Rroxscaffold_2G00089820 Rroxscaffold_2G00089830
rosa_rugosa	Rorug01G0206900 Rorug02G0483200 Rorug02G0483200 Rorug05G0106900 Rorug05G0106900
rosa_samantha	Rh1BG190200 Rh1BG190300 Rh1BG190400 Rh1DG219200 Rh2AG548400 Rh2BG562000 Rh2CG532800 Rh2DG570500 Rh2DG570800 Rh6AG058100 Rh6AG058400
rosa_wichuraiana	Rw2G045400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	154, 589
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	5 cut(s)	106, 223, 232, 312, 618
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	8 cut(s)	178, 248, 269, 294, 399, 547, 568, 731
AjnI	CCWGG	3 cut(s)	189, 496, 687
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	6 cut(s)	89, 136, 197, 300, 438, 644
AluI	AGCT	6 cut(s)	89, 136, 197, 300, 438, 644
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	337, 373
ApeKI	GCWGC	3 cut(s)	34, 151, 194
ApoI	RAATTY	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	507
AspA2I	CCTAGG	1 cut(s)	632
AspS9I	GGNCC	2 cut(s)	337, 374
AvrII	CCTAGG	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	46, 163, 206
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	191, 498, 689
BfaI	CTAG	3 cut(s)	228, 633, 681
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	35, 152, 195
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	3 cut(s)	36, 153, 196
BmcAI	AGTACT	2 cut(s)	106, 223
Bme1390I	CCNGG	3 cut(s)	191, 498, 689
BmgT120I	GGNCC	2 cut(s)	337, 374
BmrFI	CCNGG	3 cut(s)	191, 498, 689
BmsI	GCATC	3 cut(s)	106, 138, 618
BpmI	CTGGAG	2 cut(s)	533, 643
Bpu10I	CCTNAGC	2 cut(s)	301, 556
BpuEI	CTTGAG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	487, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bse1I	ACTGG	5 cut(s)	11, 219, 609, 626, 717
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	191, 498, 689
BseDI	CCNNGG	2 cut(s)	487, 632
BseGI	GGATG	4 cut(s)	322, 430, 633, 679
BseJI	GATNNNNATC	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	5 cut(s)	11, 219, 609, 626, 717
BseXI	GCAGC	3 cut(s)	46, 163, 206
BshFI	GGCC	2 cut(s)	339, 375
BslFI	GGGAC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	339, 375
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	154, 589
BspANI	GGCC	2 cut(s)	339, 375
BspCNI	CTCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	5 cut(s)	11, 219, 609, 626, 717
BssECI	CCNNGG	2 cut(s)	487, 632
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	487, 632
Bst2UI	CCWGG	3 cut(s)	191, 498, 689
BstAFI	CTTAAG	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	275, 301, 556
BstF5I	GGATG	4 cut(s)	322, 430, 633, 679
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	3 cut(s)	191, 498, 689
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	189, 496, 687
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	46, 163, 206
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	339, 375
BtsCI	GGATG	4 cut(s)	322, 430, 633, 679
BtsIMutI	CAGTG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	337, 374
Csp6I	GTAC	5 cut(s)	105, 222, 231, 311, 617
CviAII	CATG	2 cut(s)	38, 388
CviQI	GTAC	5 cut(s)	105, 222, 231, 311, 617
DdeI	CTNAG	3 cut(s)	275, 301, 556
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	487, 632
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	3 cut(s)	189, 496, 687
EcoT14I	CCWWGG	2 cut(s)	487, 632
ErhI	CCWWGG	2 cut(s)	487, 632
FaeI	CATG	2 cut(s)	41, 391
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 539, 571
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	2 cut(s)	37, 387
FauI	CCCGC	1 cut(s)	582
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	35, 152, 195
FokI	GGATG	4 cut(s)	309, 437, 640, 686
Fsp4HI	GCNGC	3 cut(s)	35, 152, 195
FspBI	CTAG	3 cut(s)	228, 633, 681
GluI	GCNGC	3 cut(s)	35, 152, 195
GsuI	CTGGAG	2 cut(s)	533, 643
HaeIII	GGCC	2 cut(s)	339, 375
Hin1II	CATG	2 cut(s)	41, 391
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	87, 436
HinfI	GANTC	2 cut(s)	41, 677
Hpy166II	GTNNAC	2 cut(s)	385, 619
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	385, 619
HpyCH4V	TGCA	3 cut(s)	34, 151, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	3 cut(s)	275, 301, 556
Hsp92II	CATG	2 cut(s)	41, 391
Kzo9I	GATC	1 cut(s)	186
Lsp1109I	GCAGC	3 cut(s)	46, 163, 206
LweI	GCATC	3 cut(s)	106, 138, 618
MaeI	CTAG	3 cut(s)	228, 633, 681
MaeIII	GTNAC	4 cut(s)	202, 361, 390, 683
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	207, 236, 443, 515
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	6 cut(s)	56, 263, 294, 563, 599, 609
MnlI	CCTC	6 cut(s)	55, 61, 448, 490, 508, 618
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	3 cut(s)	131, 420, 440
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	439
MspR9I	CCNGG	3 cut(s)	191, 498, 689
MunI	CAATTG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	3 cut(s)	191, 498, 689
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	41, 391
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	391
PciI	ACATGT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	41, 677
PkrI	GCNGC	3 cut(s)	36, 153, 196
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	3 cut(s)	189, 496, 687
PspGI	CCWGG	3 cut(s)	189, 496, 687
PspPI	GGNCC	2 cut(s)	337, 374
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	5 cut(s)	106, 223, 232, 312, 618
RsaNI	GTAC	5 cut(s)	105, 222, 231, 311, 617
SaqAI	TTAA	3 cut(s)	131, 420, 440
SatI	GCNGC	3 cut(s)	35, 152, 195
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	337, 374
ScaI	AGTACT	2 cut(s)	106, 223
ScrFI	CCNGG	3 cut(s)	191, 498, 689
SfaNI	GCATC	3 cut(s)	106, 138, 618
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	439, 698
SmoI	CTYRAG	2 cut(s)	439, 698
Sse9I	AATT	6 cut(s)	56, 263, 294, 563, 599, 609
SsiI	CCGC	2 cut(s)	154, 589
SspMI	CTAG	3 cut(s)	228, 633, 681
StyD4I	CCNGG	3 cut(s)	189, 496, 687
StyI	CCWWGG	2 cut(s)	487, 632
TaqI	TCGA	3 cut(s)	101, 125, 536
TasI	AATT	6 cut(s)	56, 263, 294, 563, 599, 609
TatI	WGTACW	4 cut(s)	104, 221, 310, 616
TfiI	GAWTC	2 cut(s)	41, 677
Tru1I	TTAA	3 cut(s)	131, 420, 440
Tru9I	TTAA	3 cut(s)	131, 420, 440
TscAI	CASTG	1 cut(s)	626
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	3 cut(s)	34, 151, 194
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	5 cut(s)	17, 54, 489, 588, 643
TspRI	CASTG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	609
XceI	RCATGY	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	3 cut(s)	228, 633, 681
ZrmI	AGTACT	2 cut(s)	106, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.