Rh2DG570500

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002548
Physical Location & Seq
Forward (+)
80086986 .. 80088629
1644 bp
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UTR
Exon/CDS
Intron
Rh2DG570500.1

Sequence Viewer

Length: 267 bp
ATGGTTGAGCTTGTTCTAGCTTTAGCATTATTGACGCATGAATCATATGCCTCACAATTGGAGGGTCTAAAGCAGATTGTTTCTAAAGCTTTGCTTGTGTCGAGTACTAAATACGATGCTTGTTCGATTTTAAAGCTCGTTGACTCGATGCAGCGGTTAGGAGTAGCATACCACTTCAAAAAGGAGATCCAGTTACTCTTGTTTCTTCCAGTACTGCTAGTACCACAACCGATCTTCAAACAGTTGCTTTGCAATTTCGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

7.78

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 12 - 67 5.6e-10 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 181
AfaI GTAC 3 cut(s) 106, 213, 222
AgsI TTSAA 2 cut(s) 178, 238
AluBI AGCT 4 cut(s) 10, 20, 89, 136
AluI AGCT 4 cut(s) 10, 20, 89, 136
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 258
BbvI GCAGC 1 cut(s) 163
BfaI CTAG 2 cut(s) 17, 218
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmcAI AGTACT 2 cut(s) 106, 213
BmsI GCATC 2 cut(s) 106, 138
Bpu14I TTCGAA 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse1I ACTGG 2 cut(s) 190, 209
BseNI ACTGG 2 cut(s) 190, 209
BseXI GCAGC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 186, 231
BspACI CCGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 258
BsrI ACTGG 2 cut(s) 190, 209
BssMI GATC 2 cut(s) 186, 231
Bst4CI ACNGT 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 258
BstKTI GATC 2 cut(s) 189, 234
BstMBI GATC 2 cut(s) 186, 231
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 105, 212, 221
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 10, 20, 89, 136
CviKI_1 RGCY 4 cut(s) 10, 20, 89, 136
CviQI GTAC 3 cut(s) 105, 212, 221
DpnI GATC 2 cut(s) 188, 233
DpnII GATC 2 cut(s) 186, 231
DraI TTTAAA 1 cut(s) 132
FaeI CATG 1 cut(s) 41
FaiI YATR 4 cut(s) 39, 46, 48, 169
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 1 cut(s) 37
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 2 cut(s) 17, 218
GluI GCNGC 1 cut(s) 152
HgaI GACGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 2 cut(s) 41, 143
Hpy166II GTNNAC 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 151, 252
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 2 cut(s) 186, 231
LpnPI CCDG 2 cut(s) 203, 222
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 106, 138
MaeI CTAG 2 cut(s) 17, 218
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 188, 233
MboI GATC 2 cut(s) 186, 231
MboII GAAGA 2 cut(s) 197, 226
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 186
MluCI AATT 2 cut(s) 56, 253
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 2 cut(s) 55, 61
MseI TTAA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 154
MunI CAATTG 1 cut(s) 56
NdeI CATATG 1 cut(s) 46
NdeII GATC 2 cut(s) 186, 231
NlaIII CATG 1 cut(s) 41
NspV TTCGAA 1 cut(s) 258
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 3 cut(s) 106, 213, 222
RsaNI GTAC 3 cut(s) 105, 212, 221
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 186, 231
ScaI AGTACT 2 cut(s) 106, 213
SchI GAGTC 1 cut(s) 137
SetI ASST 4 cut(s) 12, 22, 91, 138
SfaNI GCATC 2 cut(s) 106, 138
SfuI TTCGAA 1 cut(s) 258
Sse9I AATT 2 cut(s) 56, 253
SsiI CCGC 1 cut(s) 154
SspMI CTAG 2 cut(s) 17, 218
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 4 cut(s) 101, 125, 146, 258
TasI AATT 2 cut(s) 56, 253
TatI WGTACW 2 cut(s) 104, 211
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 54
XspI CTAG 2 cut(s) 17, 218
ZrmI AGTACT 2 cut(s) 106, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.