Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017778.1

Orthogroup ID

OG0002548

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 572

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017778.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

atgaactggcaacacttcgcattattcttgttgcagcatgaatcatatgcctcacaattggagggtctaaagcagattgtttctaaagctttacttgtgtcgagtactaaagacgatgcttgttcgattttaaagctcgcagacttgatgcagcggttaggagtagcataccacttcaaaaaggagatccaggcagctatagttactcttgtttcttccagtactgctagtaccacaaccaatcttcaaaaagtttctttgcaatttcaaatactaagacaatatggtatttcaattagctcaggtaatgtactatacctacatccatataaaaagggccatacatatatatactcacaagtgacattctgtggccctgatgttgacatgttactttcaaactccacagatttgttttttaaggatggcgaagaaagcttaagcaacgatgtggagggacttctgtgtttgtatgaagcctcacaccttggaatgccaggagaagatgttctggaggaagccaagagttttaggtcgaaaaacttgaagcaatccttagcaaaattgaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

190

Amino Acids

21.17

Weight (kDa)

6.29

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43710 FvH4_6g43710 FvH4_6g43720 FvH4_6g43730
malus_domestica	MD17G1091300.v1.1
prunus_persica	Prupe.3G222200_v2.0.a1 Prupe.3G222300_v2.0.a1
pyrus_communis	pycom17g08820 pycom17g08830 pycom17g08840 pycom17g08850
rosa_chinensis	RchiOBHm_Chr2g0160361 RchiOBHm_Chr2g0160421 RchiOBHm_Chr2g0160441
rosa_laevigata	RLG00000021214 RLG00000021215
rosa_multiflora	Rmu_sc0008148.1_g000036 Rmu_sc0014846.1_g000003 Rmu_sc0017778.1_g000001 Rmu_ssc0000110.1_g000002 Rmu_ssc0000110.1_g000009
rosa_roxburghii	Rroxscaffold_2G00089810 Rroxscaffold_2G00089820 Rroxscaffold_2G00089830
rosa_rugosa	Rorug01G0206900 Rorug02G0483200 Rorug02G0483200 Rorug05G0106900 Rorug05G0106900
rosa_samantha	Rh1BG190200 Rh1BG190300 Rh1BG190400 Rh1DG219200 Rh2AG548400 Rh2BG562000 Rh2CG532800 Rh2DG570500 Rh2DG570800 Rh6AG058100 Rh6AG058400
rosa_wichuraiana	Rw2G045400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	181
AfaI	GTAC	4 cut(s)	106, 223, 232, 312
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	7 cut(s)	178, 248, 269, 294, 399, 547, 568
AjnI	CCWGG	2 cut(s)	189, 496
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	5 cut(s)	89, 136, 197, 300, 438
AluI	AGCT	5 cut(s)	89, 136, 197, 300, 438
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	337, 373
ApeKI	GCWGC	3 cut(s)	34, 151, 194
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	337, 374
BbvI	GCAGC	3 cut(s)	46, 163, 206
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	2 cut(s)	191, 498
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	35, 152, 195
BlsI	GCNGC	3 cut(s)	36, 153, 196
BmcAI	AGTACT	2 cut(s)	106, 223
Bme1390I	CCNGG	2 cut(s)	191, 498
BmgT120I	GGNCC	2 cut(s)	337, 374
BmrFI	CCNGG	2 cut(s)	191, 498
BmsI	GCATC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	2 cut(s)	301, 556
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bse1I	ACTGG	2 cut(s)	11, 219
BseBI	CCWGG	2 cut(s)	191, 498
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	2 cut(s)	322, 430
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	11, 219
BseXI	GCAGC	3 cut(s)	46, 163, 206
BshFI	GGCC	2 cut(s)	339, 375
BslFI	GGGAC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	339, 375
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	339, 375
BspCNI	CTCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	11, 219
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	191, 498
BstAFI	CTTAAG	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	275, 301, 556
BstF5I	GGATG	2 cut(s)	322, 430
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	191, 498
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	189, 496
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	46, 163, 206
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	339, 375
BtsCI	GGATG	2 cut(s)	322, 430
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	337, 374
Csp6I	GTAC	4 cut(s)	105, 222, 231, 311
CviAII	CATG	2 cut(s)	38, 388
CviJI	RGCY	9 cut(s)	89, 136, 197, 300, 339, 375, 438, 479, 521
CviKI_1	RGCY	9 cut(s)	89, 136, 197, 300, 339, 375, 438, 479, 521
CviQI	GTAC	4 cut(s)	105, 222, 231, 311
DdeI	CTNAG	3 cut(s)	275, 301, 556
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	189, 496
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	2 cut(s)	41, 391
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 539, 571
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	2 cut(s)	37, 387
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	35, 152, 195
FokI	GGATG	2 cut(s)	309, 437
Fsp4HI	GCNGC	3 cut(s)	35, 152, 195
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	35, 152, 195
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	339, 375
Hin1II	CATG	2 cut(s)	41, 391
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	87, 436
HinfI	GANTC	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	385
HpyCH4V	TGCA	3 cut(s)	34, 151, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	3 cut(s)	275, 301, 556
Hsp92II	CATG	2 cut(s)	41, 391
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	8 cut(s)	176, 203, 232, 288, 390, 483, 497, 510
Lsp1109I	GCAGC	3 cut(s)	46, 163, 206
LweI	GCATC	2 cut(s)	106, 138
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	202, 361, 390
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	207, 236, 443, 515
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	4 cut(s)	56, 263, 294, 563
MnlI	CCTC	5 cut(s)	55, 61, 448, 490, 508
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	3 cut(s)	131, 420, 440
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	439
MspR9I	CCNGG	2 cut(s)	191, 498
MunI	CAATTG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	191, 498
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	41, 391
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	391
PciI	ACATGT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	36, 153, 196
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	189, 496
PspGI	CCWGG	2 cut(s)	189, 496
PspPI	GGNCC	2 cut(s)	337, 374
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	4 cut(s)	106, 223, 232, 312
RsaNI	GTAC	4 cut(s)	105, 222, 231, 311
SaqAI	TTAA	3 cut(s)	131, 420, 440
SatI	GCNGC	3 cut(s)	35, 152, 195
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	337, 374
ScaI	AGTACT	2 cut(s)	106, 223
ScrFI	CCNGG	2 cut(s)	191, 498
SetI	ASST	9 cut(s)	91, 138, 199, 302, 307, 321, 440, 489, 536
SfaNI	GCATC	2 cut(s)	106, 138
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	56, 263, 294, 563
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	189, 496
StyI	CCWWGG	1 cut(s)	487
TaqI	TCGA	3 cut(s)	101, 125, 536
TasI	AATT	4 cut(s)	56, 263, 294, 563
TatI	WGTACW	3 cut(s)	104, 221, 310
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	131, 420, 440
Tru9I	TTAA	3 cut(s)	131, 420, 440
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	3 cut(s)	34, 151, 194
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	17, 54, 489
Vha464I	CTTAAG	1 cut(s)	439
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	2 cut(s)	106, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.