Rh6AG058100

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002548
Physical Location & Seq
Reverse (-)
8646843 .. 8647662
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG058100.1

Sequence Viewer

Length: 729 bp
ATGCAGTATGAATCACATGCAACACGTTTGGAGGGTCTAAAGCAGAATGTAGCCAAAGCCTTAGTCGCATCCAGTACCAAAGATGATGCTTGCTCCACTTTGAAGCTTATAGCCTCGGTGCAGCGGTTGGGAGTAGCATACCACTTCCAAAAGGAGATCCAAGCAGCTTTAGCTACTCTTCTTTCTTCCTCTAGTACCCTTGGTACCACGAATGATCATAATACAGCTGCCCTGCAATTTCAAATACTAAGAGAAAATGGTATATCAGTTAGCTCAGATTTGTTTAACAAGTTTAGAAGTGAAGAAGGAAGCTTCAAAGATAGCTTAAGCAACGACGTGGAGGGACTTTTGAGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTTTAGAGGAAGCCAAGAGATTTAGTTCAAAAAATTTGAAACAATCCATGGCAACAATATTGAACGACGATAATCTACTGAAGCAAGTAGAGCAATCACTGCAAACCCCTTTACACTGGAGGATGCGGAGGATAGAAGCTCTGAACTTCATCGATATCTACCAAAGGGACGACTCTAAGAACCCGGCACTGCTGGAGTTGGCTAAATTGGACTATAATCTTGTTCAATCAGTATATCAAATTGAGATAAAAGAGCTCTCTAGGCAAGATATGCATCATATAAATATTAAATGGAAATGTTATATAACTTCTGCTGCCAGAATGACCATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

242

Amino Acids

27.3

Weight (kDa)

6.17

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 6 - 165 5.3e-48 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 2 cut(s) 124, 520
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 3 cut(s) 76, 196, 205
AflII CTTAAG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 7 cut(s) 103, 242, 316, 423, 433, 457, 620
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 9 cut(s) 106, 167, 173, 227, 273, 312, 324, 533, 649
AluI AGCT 9 cut(s) 106, 167, 173, 227, 273, 312, 324, 533, 649
Alw21I GWGCWC 1 cut(s) 651
AlwI GGATC 1 cut(s) 151
ApeKI GCWGC 4 cut(s) 121, 164, 227, 707
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp718I GGTACC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 578
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 4 cut(s) 133, 176, 214, 694
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 578
BfaI CTAG 2 cut(s) 192, 654
BfrI CTTAAG 1 cut(s) 325
BisI GCNGC 4 cut(s) 122, 165, 228, 708
BlsI GCNGC 4 cut(s) 123, 166, 229, 709
Bme1390I CCNGG 2 cut(s) 384, 578
BmgBI CACGTC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 384, 578
BmsI GCATC 4 cut(s) 76, 77, 507, 676
BpmI CTGGAG 2 cut(s) 532, 608
BpuMI CCSGG 1 cut(s) 578
Bsa29I ATCGAT 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 4 cut(s) 114, 199, 373, 441
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 2 cut(s) 72, 515
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 114, 199, 373, 441
BseGI GGATG 2 cut(s) 68, 522
BseJI GATNNNNATC 1 cut(s) 666
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 72, 515
BseXI GCAGC 4 cut(s) 133, 176, 214, 694
BsgI GTGCAG 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 2 cut(s) 357, 575
BsmFI GGGAC 2 cut(s) 357, 575
BsmI GAATGC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 2 cut(s) 156, 214
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 124, 520
BspCNI CTCAG 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 325
BsrI ACTGG 2 cut(s) 72, 515
BssECI CCNNGG 4 cut(s) 114, 199, 373, 441
BssMI GATC 2 cut(s) 156, 214
BssT1I CCWWGG 3 cut(s) 199, 373, 441
Bst2UI CCWGG 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 325
BstAPI GCANNNNNTGC 2 cut(s) 493, 664
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 4 cut(s) 61, 248, 274, 570
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 68, 522
BstKTI GATC 2 cut(s) 159, 217
BstMBI GATC 2 cut(s) 156, 214
BstMWI GCNNNNNNNGC 6 cut(s) 65, 170, 484, 493, 655, 664
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 382, 576
BstV1I GCAGC 4 cut(s) 133, 176, 214, 694
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 546
BsuTUI ATCGAT 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 68, 522
BtsI GCAGTG 2 cut(s) 491, 581
BtsIMutI CAGTG 3 cut(s) 491, 508, 581
Cac8I GCNNGC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 3 cut(s) 75, 195, 204
CviAII CATG 2 cut(s) 17, 442
CviQI GTAC 3 cut(s) 75, 195, 204
DdeI CTNAG 4 cut(s) 61, 248, 274, 570
DpnI GATC 2 cut(s) 158, 216
DpnII GATC 2 cut(s) 156, 214
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 3 cut(s) 199, 373, 441
Eco24I GRGCYC 1 cut(s) 651
Eco32I GATATC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 382
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 3 cut(s) 199, 373, 441
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 3 cut(s) 199, 373, 441
FaeI CATG 2 cut(s) 20, 445
FaqI GGGAC 2 cut(s) 357, 575
FatI CATG 2 cut(s) 16, 441
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 122, 165, 228, 708
FokI GGATG 2 cut(s) 55, 529
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 4 cut(s) 122, 165, 228, 708
FspBI CTAG 2 cut(s) 192, 654
GluI GCNGC 4 cut(s) 122, 165, 228, 708
GsuI CTGGAG 2 cut(s) 532, 608
HapII CCGG 1 cut(s) 578
Hin1II CATG 2 cut(s) 20, 445
HindIII AAGCTT 2 cut(s) 104, 310
HinfI GANTC 2 cut(s) 11, 566
HpaII CCGG 1 cut(s) 578
Hpy188I TCNGA 2 cut(s) 277, 537
Hpy99I CGWCG 2 cut(s) 338, 464
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 25, 336
HpyCH4V TGCA 6 cut(s) 4, 20, 121, 235, 496, 667
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 170, 484, 493, 655, 664
HpyF3I CTNAG 4 cut(s) 61, 248, 274, 570
HpySE526I ACGT 2 cut(s) 25, 336
Hsp92II CATG 2 cut(s) 20, 445
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 156, 214
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 85, 245, 369, 396, 496, 572, 591, 724
Lsp1109I GCAGC 4 cut(s) 133, 176, 214, 694
LweI GCATC 4 cut(s) 76, 77, 507, 676
MaeI CTAG 2 cut(s) 192, 654
MaeII ACGT 2 cut(s) 25, 336
MalI GATC 2 cut(s) 158, 216
MboI GATC 2 cut(s) 156, 214
MboII GAAGA 4 cut(s) 170, 177, 314, 401
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 4 cut(s) 236, 427, 599, 633
MlyI GAGTC 1 cut(s) 560
MnlI CCTC 8 cut(s) 25, 124, 199, 334, 376, 394, 507, 516
Mph1103I ATGCAT 1 cut(s) 669
MseI TTAA 3 cut(s) 285, 326, 681
MspA1I CMGCKG 2 cut(s) 124, 227
MspCI CTTAAG 1 cut(s) 325
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 2 cut(s) 384, 578
Mva1269I GAATGC 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 6 cut(s) 65, 170, 484, 493, 655, 664
NciI CCSGG 1 cut(s) 578
NcoI CCATGG 1 cut(s) 441
NdeII GATC 2 cut(s) 156, 214
NlaIII CATG 2 cut(s) 20, 445
NlaIV GGNNCC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 20
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 4 cut(s) 123, 166, 229, 709
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 76, 196, 205
RsaNI GTAC 3 cut(s) 75, 195, 204
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 3 cut(s) 285, 326, 681
SatI GCNGC 4 cut(s) 122, 165, 228, 708
Sau3AI GATC 2 cut(s) 156, 214
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 384, 578
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 4 cut(s) 76, 77, 507, 676
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 4 cut(s) 236, 427, 599, 633
SsiI CCGC 2 cut(s) 124, 520
SspI AATATT 2 cut(s) 453, 679
SspMI CTAG 2 cut(s) 192, 654
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 382, 576
StyI CCWWGG 3 cut(s) 199, 373, 441
TaiI ACGT 2 cut(s) 28, 339
TaqI TCGA 1 cut(s) 546
TasI AATT 4 cut(s) 236, 427, 599, 633
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 285, 326, 681
Tru9I TTAA 3 cut(s) 285, 326, 681
TscAI CASTG 3 cut(s) 498, 515, 588
TseI GCWGC 4 cut(s) 121, 164, 227, 707
TspDTI ATGAA 3 cut(s) 24, 375, 532
TspRI CASTG 3 cut(s) 498, 515, 588
Vha464I CTTAAG 1 cut(s) 325
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 20
XspI CTAG 2 cut(s) 192, 654
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.