RchiOBHm_Chr2g0160421

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002548
Physical Location & Seq
Forward (+)
76281598 .. 76282934
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52888

Sequence Viewer

Length: 972 bp
ATGAATCTTGTATTCTCCTCCTCCTCCTCCTCCTCTCCCTCAGTCTTGCTCACAAAGCTCACAAGAACTAGTCATCCAAGAATGCTAGTTCCAGCACTGCTAGTACAAGCGTATCAGACAAGAAGAGGACAAGCCATTGTCTCAAACTCATCATCATCAAAGGTCATTGATCATCCTCCTGCAGCTCAACGCCGATTAGCTCAATACCATCCTACCATTTGGGGTCCCGACCTCATCGATTCCTTCACCACTCACTACACTTATGAATCACATGCCACACGGTGGGAGGGTCTAAAGCAGAATGTAGCCAAAGCCTTAGTCGCATCCAGTACTAAAGATGATGCTTGCTCCATTCTGAAGCTTATATCCTCGGTGCAGCGGTTGGGAGTAGCATACCACTTCCGAAAGGAGATCCAAGCAGCTCTGGTCACTCTGATTTCTTCCACTAGTACCCTTAGTACCACAAATGATCTTCATACAGCAGCCTTGCAATTTCAAATACTAAGAGAAAATGGTATATCAGTAAGCTCAGATTTGTTTAACAAGTTTAGAAGTGGAGAAGGAAGCTTCAAAGATAGCTTAAGCAACGGTGTGGAGGGACTTTTGAGTTTGAATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTAGAGGAAGCTAAGAGATTTAGTTCAAAAAATTTGAAACAATCCATGTCAACAATATTGAACGACGATAATCTACTGAAGCAAGTAGAGCAATCACTGAAAACCCCTGTACACTGGAGGATGCCTAGGATAGAAGCTCTGAACTTCATCGATATCTACCAAAGGGACGACTCTAAGAACCTGGCACTGCTGGAGTTGGCTAAATTGGACTATAATCTTGTTCAATCAGTATATCAAATTGAGATAAAAGAGCTCTCTAGGCAAGATATGCATCATATAATTACATGGAAATATGTTATAGAACTTCTGCTGCCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

323

Amino Acids

36.24

Weight (kDa)

7.87

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 74 - 250 2.3e-46 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 406
AcsI RAATTY 1 cut(s) 682
AcuI CTGAAG 2 cut(s) 377, 749
AdeI CACNNNGTG 1 cut(s) 282
AfaI GTAC 5 cut(s) 105, 331, 451, 460, 762
AfiI CCNNNNNNNGG 1 cut(s) 282
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 7 cut(s) 497, 571, 613, 678, 688, 712, 875
AhlI ACTAGT 2 cut(s) 68, 446
AjnI CCWGG 2 cut(s) 637, 831
AloI GAACNNNNNNTCC 4 cut(s) 58, 90, 633, 665
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 406
ApeKI GCWGC 5 cut(s) 182, 376, 419, 482, 961
ApoI RAATTY 1 cut(s) 682
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
Asp700I GAANNNNTTC 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 776
BaeI ACNNNNGTAYC 2 cut(s) 95, 128
BanII GRGCYC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 5 cut(s) 194, 388, 431, 494, 948
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 639, 833
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 145
BcuI ACTAGT 2 cut(s) 68, 446
BfaI CTAG 7 cut(s) 69, 86, 101, 447, 653, 777, 909
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 5 cut(s) 183, 377, 420, 483, 962
BlnI CCTAGG 1 cut(s) 776
BlsI GCNGC 5 cut(s) 184, 378, 421, 484, 963
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 639, 833
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 225, 226
BmrFI CCNGG 2 cut(s) 639, 833
BmsI GCATC 4 cut(s) 331, 332, 762, 931
BpmI CTGGAG 2 cut(s) 787, 863
Bsa29I ATCGAT 2 cut(s) 237, 801
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 3 cut(s) 369, 628, 776
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 327, 770
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 2 cut(s) 639, 833
BseCI ATCGAT 2 cut(s) 237, 801
BseDI CCNNGG 3 cut(s) 369, 628, 776
BseGI GGATG 5 cut(s) 73, 172, 208, 323, 777
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 54, 543
BseNI ACTGG 2 cut(s) 327, 770
BseRI GAGGAG 6 cut(s) 7, 10, 13, 16, 19, 22
BseXI GCAGC 5 cut(s) 194, 388, 431, 494, 948
BsgI GTGCAG 1 cut(s) 395
BshVI ATCGAT 2 cut(s) 237, 801
BsiHKAI GWGCWC 1 cut(s) 906
BslFI GGGAC 3 cut(s) 210, 612, 830
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 3 cut(s) 210, 612, 830
BsmI GAATGC 2 cut(s) 87, 639
Bsp1286I GDGCHC 1 cut(s) 906
Bsp1407I TGTACA 1 cut(s) 760
Bsp143I GATC 3 cut(s) 169, 411, 469
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 53, 542
BspDI ATCGAT 2 cut(s) 237, 801
BspLI GGNNCC 2 cut(s) 225, 226
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 406
BspTI CTTAAG 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 760
BsrI ACTGG 2 cut(s) 327, 770
BssECI CCNNGG 3 cut(s) 369, 628, 776
BssMI GATC 3 cut(s) 169, 411, 469
BssT1I CCWWGG 2 cut(s) 628, 776
Bst2UI CCWGG 2 cut(s) 639, 833
Bst4CI ACNGT 2 cut(s) 282, 590
Bst6I CTCTTC 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 919
BstAUI TGTACA 1 cut(s) 760
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 7 cut(s) 40, 316, 455, 503, 529, 663, 825
BstF5I GGATG 5 cut(s) 73, 172, 208, 323, 777
BstKTI GATC 3 cut(s) 172, 414, 472
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 169, 411, 469
BstMWI GCNNNNNNNGC 5 cut(s) 55, 320, 739, 910, 919
BstNI CCWGG 2 cut(s) 639, 833
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 637, 831
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 5 cut(s) 194, 388, 431, 494, 948
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
Bsu15I ATCGAT 2 cut(s) 237, 801
BsuTUI ATCGAT 2 cut(s) 237, 801
BtsCI GGATG 5 cut(s) 73, 172, 208, 323, 777
BtsI GCAGTG 2 cut(s) 95, 836
BtsIMutI CAGTG 4 cut(s) 95, 746, 763, 836
Cac8I GCNNGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 2 cut(s) 237, 801
Csp6I GTAC 5 cut(s) 104, 330, 450, 459, 761
CviAII CATG 3 cut(s) 272, 697, 936
CviQI GTAC 5 cut(s) 104, 330, 450, 459, 761
DdeI CTNAG 7 cut(s) 40, 316, 455, 503, 529, 663, 825
DpnI GATC 3 cut(s) 171, 413, 471
DpnII GATC 3 cut(s) 169, 411, 469
DraIII CACNNNGTG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 2 cut(s) 628, 776
Eco24I GRGCYC 1 cut(s) 906
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 904
Eco57I CTGAAG 2 cut(s) 377, 749
EcoICRI GAGCTC 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 637, 831
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 628, 776
EcoT22I ATGCAT 1 cut(s) 924
EcoT38I GRGCYC 1 cut(s) 906
ErhI CCWWGG 2 cut(s) 628, 776
FaeI CATG 3 cut(s) 275, 700, 939
FaqI GGGAC 3 cut(s) 210, 612, 830
FatI CATG 3 cut(s) 271, 696, 935
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 5 cut(s) 183, 377, 420, 483, 962
FokI GGATG 5 cut(s) 60, 159, 195, 310, 784
FriOI GRGCYC 1 cut(s) 906
Fsp4HI GCNGC 5 cut(s) 183, 377, 420, 483, 962
FspBI CTAG 7 cut(s) 69, 86, 101, 447, 653, 777, 909
GluI GCNGC 5 cut(s) 183, 377, 420, 483, 962
GsuI CTGGAG 2 cut(s) 787, 863
Hin1II CATG 3 cut(s) 275, 700, 939
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HindIII AAGCTT 2 cut(s) 359, 565
HinfI GANTC 4 cut(s) 4, 239, 266, 821
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 702, 763
Hpy188I TCNGA 6 cut(s) 117, 357, 404, 435, 532, 792
Hpy188III TCNNGA 2 cut(s) 227, 653
Hpy8I GTNNAC 2 cut(s) 702, 763
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 2 cut(s) 253, 554
HpyCH4III ACNGT 2 cut(s) 282, 590
HpyCH4V TGCA 4 cut(s) 182, 376, 490, 922
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 320, 739, 910, 919
HpyF3I CTNAG 7 cut(s) 40, 316, 455, 503, 529, 663, 825
Hsp92II CATG 3 cut(s) 275, 700, 939
KflI GGGWCCC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 169, 411, 469
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 5 cut(s) 194, 388, 431, 494, 948
LweI GCATC 4 cut(s) 331, 332, 762, 931
MaeI CTAG 7 cut(s) 69, 86, 101, 447, 653, 777, 909
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 171, 413, 471
MboI GATC 3 cut(s) 169, 411, 469
MboII GAAGA 4 cut(s) 135, 432, 464, 656
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 906
MluCI AATT 5 cut(s) 491, 682, 854, 888, 930
MlyI GAGTC 1 cut(s) 815
Mph1103I ATGCAT 1 cut(s) 924
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 2 cut(s) 540, 581
MspA1I CMGCKG 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 580
MspR9I CCNGG 2 cut(s) 639, 833
Mva1269I GAATGC 2 cut(s) 87, 639
MvaI CCWGG 2 cut(s) 639, 833
MwoI GCNNNNNNNGC 5 cut(s) 55, 320, 739, 910, 919
NdeII GATC 3 cut(s) 169, 411, 469
NlaIII CATG 3 cut(s) 275, 700, 939
NlaIV GGNNCC 2 cut(s) 225, 226
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 924
NspI RCATGY 1 cut(s) 275
PctI GAATGC 2 cut(s) 87, 639
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 3 cut(s) 4, 239, 266
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 5 cut(s) 184, 378, 421, 484, 963
PleI GAGTC 1 cut(s) 815
PpsI GAGTC 1 cut(s) 815
PpuMI RGGWCCY 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 637, 831
PspGI CCWGG 2 cut(s) 637, 831
PspN4I GGNNCC 2 cut(s) 225, 226
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 5 cut(s) 105, 331, 451, 460, 762
RsaNI GTAC 5 cut(s) 104, 330, 450, 459, 761
SacI GAGCTC 1 cut(s) 906
SaqAI TTAA 2 cut(s) 540, 581
SatI GCNGC 5 cut(s) 183, 377, 420, 483, 962
Sau3AI GATC 3 cut(s) 169, 411, 469
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 2 cut(s) 639, 833
SduI GDGCHC 1 cut(s) 906
SfaNI GCATC 4 cut(s) 331, 332, 762, 931
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
SpeI ACTAGT 2 cut(s) 68, 446
Sse9I AATT 5 cut(s) 491, 682, 854, 888, 930
SsiI CCGC 1 cut(s) 379
SspI AATATT 1 cut(s) 708
SspMI CTAG 7 cut(s) 69, 86, 101, 447, 653, 777, 909
SstI GAGCTC 1 cut(s) 906
StyD4I CCNGG 2 cut(s) 637, 831
StyI CCWWGG 2 cut(s) 628, 776
TaaI ACNGT 2 cut(s) 282, 590
TaqI TCGA 2 cut(s) 237, 801
TasI AATT 5 cut(s) 491, 682, 854, 888, 930
TatI WGTACW 3 cut(s) 103, 329, 760
TfiI GAWTC 3 cut(s) 4, 239, 266
Tru1I TTAA 2 cut(s) 540, 581
Tru9I TTAA 2 cut(s) 540, 581
TscAI CASTG 4 cut(s) 102, 753, 770, 843
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 5 cut(s) 182, 376, 419, 482, 961
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 5 cut(s) 17, 279, 464, 630, 787
TspRI CASTG 4 cut(s) 102, 753, 770, 843
Van91I CCANNNNNTGG 1 cut(s) 282
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 682
XbaI TCTAGA 1 cut(s) 652
XceI RCATGY 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 7 cut(s) 69, 86, 101, 447, 653, 777, 909
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.