Rh1DG219200

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002548
Physical Location & Seq
Reverse (-)
42640482 .. 42641302
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG219200.1

Sequence Viewer

Length: 726 bp
ATGCAGTATGAATCACATGCCACACGTTTGGAGGGTCTAAAGAAGAATGTAGCCAAAGCCTTAGTCGCATCCAGTACTAAAGACGATGCTTGCTCCGTTTTGAAGCTTATAGCCTCGGTACAGCGGTTGGGAGTAGCATACCACTTCCGAAATGAGATCGAATCAGCTCTAGTTACTCTTCTTTCTTCCACTAGCACCCTTAGTACCACAAATGATCTTCATACAGCTGCCTTGCAATTTCAAATACTAAGAGAAAATGGTATATCAGTAAGCTCAGATTTGTTTAACAAGTTTAGAAGTGGGGAAGGAAGCTTCAAAGATAGCTTAAGCAACGACGTGGAGGGACTTTTGAGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGAAGCCAAGAGATTTAGTTCAAAAAATTTGAAACAATCCAAGGCAACAATATTGAACGGCGATAATCTACTGAAGCGAGTAGAGCAATCATTGCAAACCCCTGTTCACTGGAGGATGCCGAGGATAGAAGCTCTGAACTTCATCGATATGTACCAAAGGGACGACTCTAAGAACCTGGCACTGCTGGAGTTGGCTAAATTGGACTATAATCTTGTTCAATCAGTATATCAAATTGAGATAAAGGAGCTCTCTAGGCAAGATATGCATCATATAACTATATGGAAATGTTTTATAACTTATGCTGTCAGAATGACTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

241

Amino Acids

27.2

Weight (kDa)

6.66

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 6 - 165 9.6e-47 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 4 cut(s) 76, 120, 205, 554
AflII CTTAAG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 7 cut(s) 103, 242, 316, 423, 433, 457, 620
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 2 cut(s) 382, 576
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 8 cut(s) 106, 167, 227, 273, 312, 324, 533, 649
AluI AGCT 8 cut(s) 106, 167, 227, 273, 312, 324, 533, 649
Alw21I GWGCWC 1 cut(s) 651
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp700I GAANNNNTTC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 384, 578
BfaI CTAG 3 cut(s) 170, 192, 654
BfrI CTTAAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 384, 578
BmgBI CACGTC 1 cut(s) 337
BmrFI CCNGG 2 cut(s) 384, 578
BmsI GCATC 4 cut(s) 76, 77, 507, 676
BpmI CTGGAG 3 cut(s) 419, 532, 608
Bsa29I ATCGAT 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 4 cut(s) 114, 373, 441, 521
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 2 cut(s) 72, 515
Bse3DI GCAATG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 2 cut(s) 384, 578
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 114, 373, 441, 521
BseGI GGATG 2 cut(s) 68, 522
BseJI GATNNNNATC 1 cut(s) 666
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 72, 515
BseXI GCAGC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 651
BslFI GGGAC 2 cut(s) 357, 575
BsmFI GGGAC 2 cut(s) 357, 575
BsmI GAATGC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 2 cut(s) 156, 214
BspACI CCGC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 2 cut(s) 72, 515
BssECI CCNNGG 4 cut(s) 114, 373, 441, 521
BssMI GATC 2 cut(s) 156, 214
BssT1I CCWWGG 2 cut(s) 373, 441
Bst2UI CCWGG 2 cut(s) 384, 578
Bst6I CTCTTC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 325
BstAPI GCANNNNNTGC 2 cut(s) 493, 664
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 5 cut(s) 61, 200, 248, 274, 570
BstF5I GGATG 2 cut(s) 68, 522
BstKTI GATC 2 cut(s) 159, 217
BstMBI GATC 2 cut(s) 156, 214
BstMWI GCNNNNNNNGC 5 cut(s) 65, 484, 493, 655, 664
BstNI CCWGG 2 cut(s) 384, 578
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 382, 576
BstV1I GCAGC 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 546
BsuTUI ATCGAT 1 cut(s) 546
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 68, 522
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 508, 581
Cac8I GCNNGC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 4 cut(s) 75, 119, 204, 553
CviAII CATG 1 cut(s) 17
CviQI GTAC 4 cut(s) 75, 119, 204, 553
DdeI CTNAG 5 cut(s) 61, 200, 248, 274, 570
DpnI GATC 2 cut(s) 158, 216
DpnII GATC 2 cut(s) 156, 214
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 373, 441
Eco24I GRGCYC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 382, 576
EcoT14I CCWWGG 2 cut(s) 373, 441
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 373, 441
FaeI CATG 1 cut(s) 20
FaqI GGGAC 2 cut(s) 357, 575
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 2 cut(s) 55, 529
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 3 cut(s) 170, 192, 654
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 3 cut(s) 419, 532, 608
Hin1II CATG 1 cut(s) 20
HindIII AAGCTT 2 cut(s) 104, 310
HinfI GANTC 3 cut(s) 11, 161, 566
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 149, 277, 537, 710
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 25, 336
HpyCH4V TGCA 4 cut(s) 4, 235, 496, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 484, 493, 655, 664
HpyF3I CTNAG 5 cut(s) 61, 200, 248, 274, 570
HpySE526I ACGT 2 cut(s) 25, 336
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 156, 214
LmnI GCTCC 2 cut(s) 98, 646
LpnPI CCDG 9 cut(s) 85, 369, 383, 396, 496, 516, 563, 572, 590
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 4 cut(s) 76, 77, 507, 676
MaeI CTAG 3 cut(s) 170, 192, 654
MaeII ACGT 2 cut(s) 25, 336
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 158, 216
MboI GATC 2 cut(s) 156, 214
MboII GAAGA 5 cut(s) 55, 170, 177, 209, 401
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 4 cut(s) 236, 427, 599, 633
MlyI GAGTC 1 cut(s) 560
MnlI CCTC 7 cut(s) 25, 124, 334, 376, 394, 507, 516
Mph1103I ATGCAT 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 285, 326
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 2 cut(s) 124, 227
MspCI CTTAAG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 384, 578
Mva1269I GAATGC 1 cut(s) 384
MvaI CCWGG 2 cut(s) 384, 578
MwoI GCNNNNNNNGC 5 cut(s) 65, 484, 493, 655, 664
NdeII GATC 2 cut(s) 156, 214
NlaIII CATG 1 cut(s) 20
NmeAIII GCCGAG 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 20
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 11, 161
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PsiI TTATAA 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 382, 576
PspGI CCWGG 2 cut(s) 382, 576
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 4 cut(s) 76, 120, 205, 554
RsaNI GTAC 4 cut(s) 75, 119, 204, 553
RseI CAYNNNNRTG 1 cut(s) 548
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 2 cut(s) 285, 326
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 156, 214
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 384, 578
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 4 cut(s) 76, 77, 507, 676
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 4 cut(s) 236, 427, 599, 633
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 453
SspMI CTAG 3 cut(s) 170, 192, 654
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 382, 576
StyI CCWWGG 2 cut(s) 373, 441
TaiI ACGT 2 cut(s) 28, 339
TaqI TCGA 2 cut(s) 159, 546
TasI AATT 4 cut(s) 236, 427, 599, 633
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 2 cut(s) 11, 161
Tru1I TTAA 2 cut(s) 285, 326
Tru9I TTAA 2 cut(s) 285, 326
TscAI CASTG 2 cut(s) 515, 588
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 24, 209, 375, 532
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 515, 588
Vha464I CTTAAG 1 cut(s) 325
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 3 cut(s) 170, 192, 654
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.